Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0016530

Physical Location & Seq

Genomic Coordinates Forward (+)

36477860 .. 36480743

Gene Structure 2884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1309600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGAGTTTCCAAGATCTTGAGGCTGGTTCTTCTCCCCAACAGCAACAGCAGCAACAACGACGACCTTTCGTTTACTCGAATGCAATTCAGAACCAGCAGCAGCAGCAAAATCGAAATCAATATCTTTACGAGCCGTCTCAGGCCCTGTCTGCCGGGATTTTCCAGATCAACACCGCCGTATCCACTTATTACCGCCTCGTCAATTCCCTCGGCACCCCCAAAGACACCCTTCAACTCCGCGACAAGCTGCGTAAGACAAGGGCGCATATTGGGCAGTTGGTGAAAGATACTTCAGACAAACTCAAGCAAGCTAGTGAAACTGATCACCATGCCCAAGTTACTGTTGTCAAGAAGATTACGGATGCTAAGCTTGCAAAGGATTTCCAGGCGGTTCTCAAAGAATTTCAGAAGGCTCAGAGGCTTGCAGCTGAAAGGGAAACAACATATGCTCCCTTTGTTCCCAAAGACGTTCTTCCATCCAGTCATCCTGCCCATGAGCAGGAGATGAGTTCATCTAGGAGTTCCAAACAGCAAACTCTTCTTCTAGAATCAAAAAGACAAGAGGTTGTACTTGCGGACAATGAGATTGCATTCAATGAAGCCATTATTGAAGAAAGGGAGCAAGGGATCCAAGAAATTCAACAACAGATCAGTGAGGTTAATGAGATTTTCAAAGATCTAGCTGTACTGGTCCATGATCAAGGAGCTATAATCGATGATATTGGTTCTAACATTGAGAACTCCCACGCTGCAACTGTGCAAGCTACCTCCCACCTTGTGAAAGCATCCAAGACCCAAAGATCTAATTCATCTCTGACTTGTTTGCTGTTGGTGATATTTGGAGTCATCCTCATCATTGTGATTATAGTTGTGGTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin_2

Protein Analysis

294

Amino Acids

32.84

Weight (kDa)

6.46

Isoelectric Point (pI)

54.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin_2	PF14523	46 - 178	3.8e-33	Syntaxin-like protein
SNARE	PF05739	237 - 288	1.9e-14	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16830
fragaria_vesca	FvH4_7g34071
malus_domestica	MD01G1237000.v1.1 MD07G1309600.v1.1
prunus_persica	Prupe.2G327300_v2.0.a1
pyrus_communis	pycom01g24480 pycom07g28160
rosa_chinensis	RchiOBHm_Chr1g0384351
rosa_laevigata	RLG00000026046
rosa_multiflora	Rmu_sc0016737.1_g000006
rosa_roxburghii	Rroxscaffold_4G00276750
rosa_rugosa	Rorug01G0447000
rosa_samantha	Rh1CG443100
rosa_wichuraiana	Rw1G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	212
AccII	CGCG	1 cut(s)	240
AciI	CCGC	5 cut(s)	174, 193, 238, 389, 575
AclWI	GGATC	2 cut(s)	622, 635
AcsI	RAATTY	2 cut(s)	401, 636
AcuI	CTGAAG	1 cut(s)	276
AdeI	CACNNNGTG	1 cut(s)	778
AfaI	GTAC	2 cut(s)	570, 687
AfiI	CCNNNNNNNGG	1 cut(s)	499
AgsI	TTSAA	5 cut(s)	233, 595, 611, 641, 673
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	7 cut(s)	247, 311, 370, 428, 683, 707, 764
AluI	AGCT	7 cut(s)	247, 311, 370, 428, 683, 707, 764
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	2 cut(s)	622, 635
AlwNI	CAGNNNCTG	1 cut(s)	145
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	7 cut(s)	49, 97, 100, 103, 247, 425, 749
ApoI	RAATTY	2 cut(s)	401, 636
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	2 cut(s)	142, 691
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	3 cut(s)	292, 317, 844
AvaII	GGWCC	1 cut(s)	691
BaeI	ACNNNNGTAYC	2 cut(s)	162, 195
BamHI	GGATCC	1 cut(s)	627
BanI	GGYRCC	1 cut(s)	212
BbvI	GCAGC	7 cut(s)	61, 109, 112, 115, 234, 437, 736
BccI	CCATC	1 cut(s)	484
BceAI	ACGGC	2 cut(s)	118, 161
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BciT130I	CCWGG	1 cut(s)	386
BciVI	GTATCC	1 cut(s)	190
BclI	TGATCA	2 cut(s)	322, 697
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	4 cut(s)	312, 516, 545, 680
BfuI	GTATCC	1 cut(s)	190
BglII	AGATCT	3 cut(s)	13, 676, 800
BisI	GCNGC	7 cut(s)	50, 98, 101, 104, 248, 426, 750
BlpI	GCTNAGC	1 cut(s)	366
BlsI	GCNGC	7 cut(s)	51, 99, 102, 105, 249, 427, 751
Bme1390I	CCNGG	2 cut(s)	154, 386
Bme18I	GGWCC	1 cut(s)	691
BmgT120I	GGNCC	2 cut(s)	142, 691
BmiI	GGNNCC	2 cut(s)	214, 629
BmrFI	CCNGG	2 cut(s)	154, 386
BmsI	GCATC	2 cut(s)	352, 794
BplI	GAGNNNNNCTC	2 cut(s)	834, 866
Bpu1102I	GCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	2 cut(s)	38, 287
BpuMI	CCSGG	1 cut(s)	154
Bsa29I	ATCGAT	1 cut(s)	714
BsaJI	CCNNGG	1 cut(s)	208
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bsc4I	CCNNNNNNNGG	1 cut(s)	499
Bse1I	ACTGG	2 cut(s)	480, 693
BseBI	CCWGG	1 cut(s)	386
BseCI	ATCGAT	1 cut(s)	714
BseDI	CCNNGG	1 cut(s)	208
BseGI	GGATG	5 cut(s)	367, 476, 484, 785, 846
BseLI	CCNNNNNNNGG	1 cut(s)	499
BseMII	CTCAG	2 cut(s)	152, 428
BseNI	ACTGG	2 cut(s)	480, 693
BseXI	GCAGC	7 cut(s)	61, 109, 112, 115, 234, 437, 736
Bsh1236I	CGCG	1 cut(s)	240
BshFI	GGCC	1 cut(s)	143
BshNI	GGYRCC	1 cut(s)	212
BshVI	ATCGAT	1 cut(s)	714
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	499
BsmAI	GTCTC	1 cut(s)	141
BsmBI	CGTCTC	1 cut(s)	141
BsmI	GAATGC	2 cut(s)	85, 590
BsnI	GGCC	1 cut(s)	143
Bsp143I	GATC	8 cut(s)	13, 165, 322, 627, 648, 676, 697, 800
Bsp1720I	GCTNAGC	1 cut(s)	366
BspACI	CCGC	5 cut(s)	174, 193, 238, 389, 575
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	2 cut(s)	151, 427
BspDI	ATCGAT	1 cut(s)	714
BspFNI	CGCG	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	214, 629
BspPI	GGATC	2 cut(s)	622, 635
BspT107I	GGYRCC	1 cut(s)	212
BsrI	ACTGG	2 cut(s)	480, 693
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	8 cut(s)	13, 165, 322, 627, 648, 676, 697, 800
Bst2UI	CCWGG	1 cut(s)	386
Bst4CI	ACNGT	2 cut(s)	343, 757
Bst6I	CTCTTC	1 cut(s)	543
BstC8I	GCNNGC	4 cut(s)	309, 372, 423, 762
BstDEI	CTNAG	3 cut(s)	138, 366, 414
BstF5I	GGATG	5 cut(s)	367, 476, 484, 785, 846
BstFNI	CGCG	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	8 cut(s)	16, 168, 325, 630, 651, 679, 700, 803
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	8 cut(s)	13, 165, 322, 627, 648, 676, 697, 800
BstMWI	GCNNNNNNNGC	5 cut(s)	49, 103, 149, 271, 371
BstNI	CCWGG	1 cut(s)	386
BstSCI	CCNGG	2 cut(s)	152, 384
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	7 cut(s)	61, 109, 112, 115, 234, 437, 736
BstX2I	RGATCY	4 cut(s)	13, 627, 676, 800
BstYI	RGATCY	4 cut(s)	13, 627, 676, 800
Bsu15I	ATCGAT	1 cut(s)	714
BsuI	GTATCC	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	143
BsuTUI	ATCGAT	1 cut(s)	714
BtsCI	GGATG	5 cut(s)	367, 476, 484, 785, 846
BtsIMutI	CAGTG	1 cut(s)	658
Cac8I	GCNNGC	4 cut(s)	309, 372, 423, 762
CaiI	CAGNNNCTG	1 cut(s)	145
CfoI	GCGC	1 cut(s)	265
Cfr13I	GGNCC	2 cut(s)	142, 691
ClaI	ATCGAT	1 cut(s)	714
Csp6I	GTAC	2 cut(s)	569, 686
CviAII	CATG	3 cut(s)	329, 494, 695
CviQI	GTAC	2 cut(s)	569, 686
DdeI	CTNAG	3 cut(s)	138, 366, 414
DpnI	GATC	8 cut(s)	15, 167, 324, 629, 650, 678, 699, 802
DpnII	GATC	8 cut(s)	13, 165, 322, 627, 648, 676, 697, 800
DraIII	CACNNNGTG	1 cut(s)	778
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
Eco47I	GGWCC	1 cut(s)	691
Eco57I	CTGAAG	1 cut(s)	276
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	384
Esp3I	CGTCTC	1 cut(s)	141
FaeI	CATG	3 cut(s)	332, 497, 698
FaiI	YATR	8 cut(s)	267, 330, 445, 447, 495, 696, 710, 866
FalI	AAGNNNNNCTT	4 cut(s)	213, 245, 456, 488
FatI	CATG	3 cut(s)	328, 493, 694
FauNDI	CATATG	1 cut(s)	445
FbaI	TGATCA	2 cut(s)	322, 697
Fnu4HI	GCNGC	7 cut(s)	50, 98, 101, 104, 248, 426, 750
FokI	GGATG	5 cut(s)	374, 463, 471, 772, 833
Fsp4HI	GCNGC	7 cut(s)	50, 98, 101, 104, 248, 426, 750
FspBI	CTAG	4 cut(s)	312, 516, 545, 680
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	7 cut(s)	50, 98, 101, 104, 248, 426, 750
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	1 cut(s)	153
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	3 cut(s)	332, 497, 698
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	2 cut(s)	548, 843
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	3 cut(s)	292, 317, 844
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	5 cut(s)	90, 295, 408, 417, 816
Hpy188III	TCNNGA	4 cut(s)	17, 163, 349, 545
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	1 cut(s)	63
HpyAV	CCTTC	2 cut(s)	239, 403
HpyCH4III	ACNGT	2 cut(s)	343, 757
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	6 cut(s)	83, 374, 425, 590, 752, 760
HpyF10VI	GCNNNNNNNGC	5 cut(s)	49, 103, 149, 271, 371
HpyF3I	CTNAG	3 cut(s)	138, 366, 414
HpySE526I	ACGT	1 cut(s)	468
Hsp92II	CATG	3 cut(s)	332, 497, 698
HspAI	GCGC	1 cut(s)	263
Ksp22I	TGATCA	2 cut(s)	322, 697
Kzo9I	GATC	8 cut(s)	13, 165, 322, 627, 648, 676, 697, 800
LmnI	GCTCC	3 cut(s)	454, 619, 704
Lsp1109I	GCAGC	7 cut(s)	61, 109, 112, 115, 234, 437, 736
LweI	GCATC	2 cut(s)	352, 794
MaeI	CTAG	4 cut(s)	312, 516, 545, 680
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	8 cut(s)	15, 167, 324, 629, 650, 678, 699, 802
MboI	GATC	8 cut(s)	13, 165, 322, 627, 648, 676, 697, 800
MboII	GAAGA	6 cut(s)	21, 364, 464, 530, 533, 623
MflI	RGATCY	4 cut(s)	13, 627, 676, 800
MluCI	AATT	5 cut(s)	84, 202, 401, 636, 805
MlyI	GAGTC	1 cut(s)	852
MnlI	CCTC	8 cut(s)	13, 206, 218, 411, 556, 649, 778, 860
MseI	TTAA	1 cut(s)	660
MslI	CAYNNNNRTG	1 cut(s)	857
MspA1I	CMGCKG	1 cut(s)	428
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	2 cut(s)	154, 386
Mva1269I	GAATGC	2 cut(s)	85, 590
MvaI	CCWGG	1 cut(s)	386
MvnI	CGCG	1 cut(s)	240
MwoI	GCNNNNNNNGC	5 cut(s)	49, 103, 149, 271, 371
NciI	CCSGG	1 cut(s)	154
NdeI	CATATG	1 cut(s)	445
NdeII	GATC	8 cut(s)	13, 165, 322, 627, 648, 676, 697, 800
NlaIII	CATG	3 cut(s)	332, 497, 698
NlaIV	GGNNCC	2 cut(s)	214, 629
NmeAIII	GCCGAG	1 cut(s)	189
PctI	GAATGC	2 cut(s)	85, 590
PfeI	GAWTC	1 cut(s)	548
PkrI	GCNGC	7 cut(s)	51, 99, 102, 105, 249, 427, 751
PleI	GAGTC	1 cut(s)	851
PpsI	GAGTC	1 cut(s)	851
Psp6I	CCWGG	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	2 cut(s)	214, 629
PspPI	GGNCC	2 cut(s)	142, 691
PstNI	CAGNNNCTG	1 cut(s)	145
PsuI	RGATCY	4 cut(s)	13, 627, 676, 800
PvuII	CAGCTG	1 cut(s)	428
RsaI	GTAC	2 cut(s)	570, 687
RsaNI	GTAC	2 cut(s)	569, 686
RseI	CAYNNNNRTG	1 cut(s)	857
SaqAI	TTAA	1 cut(s)	660
SatI	GCNGC	7 cut(s)	50, 98, 101, 104, 248, 426, 750
Sau3AI	GATC	8 cut(s)	13, 165, 322, 627, 648, 676, 697, 800
Sau96I	GGNCC	2 cut(s)	142, 691
SchI	GAGTC	1 cut(s)	852
ScrFI	CCNGG	2 cut(s)	154, 386
SfaNI	GCATC	2 cut(s)	352, 794
SinI	GGWCC	1 cut(s)	691
SmiMI	CAYNNNNRTG	1 cut(s)	857
SmlI	CTYRAG	2 cut(s)	17, 302
SmoI	CTYRAG	2 cut(s)	17, 302
Sse9I	AATT	5 cut(s)	84, 202, 401, 636, 805
SsiI	CCGC	5 cut(s)	174, 193, 238, 389, 575
SspMI	CTAG	4 cut(s)	312, 516, 545, 680
StyD4I	CCNGG	2 cut(s)	152, 384
TaaI	ACNGT	2 cut(s)	343, 757
TaiI	ACGT	1 cut(s)	471
TaqI	TCGA	3 cut(s)	77, 112, 714
TasI	AATT	5 cut(s)	84, 202, 401, 636, 805
TatI	WGTACW	2 cut(s)	568, 685
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	1 cut(s)	660
Tru9I	TTAA	1 cut(s)	660
TscAI	CASTG	1 cut(s)	658
TseI	GCWGC	7 cut(s)	49, 97, 100, 103, 247, 425, 749
TspDTI	ATGAA	3 cut(s)	501, 612, 798
TspGWI	ACGGA	1 cut(s)	374
TspRI	CASTG	1 cut(s)	658
VpaK11BI	GGWCC	1 cut(s)	691
XapI	RAATTY	2 cut(s)	401, 636
XbaI	TCTAGA	1 cut(s)	544
XspI	CTAG	4 cut(s)	312, 516, 545, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.