Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003548

Physical Location & Seq

Genomic Coordinates Forward (+)

54259339 .. 54261966

Gene Structure 2628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0447000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGCAACCATACACGAGAGACCCTCTATACACTATTTACGAAAGCGTGAGAGATCTCAGGGAACCTTGTGAAACATGTTCTGCAATTTTTCTTTCACCCATCAATTTAAGGAGACATGATATAGTGAAACATGCACAGCGTAGGAAGCCAATTGATTCTACTAACCCTAAGGAAAAACTACAAGCATTTTGGAATACGCTCTCGGTTGAACAACAAAAAGAAGTTCTTTTTGTCAAAGGTGATGCTATTCTAGCTCAAGTCAAAGTTCCAGATTCTTCAGTAAAGAAGGATTTGGAAGTACTGAAGGATTTGGAAGAATTTGCTCAGACATATGCACATTTAATCAAGTGTACCTCACAACTCAAAACTCGTCTTGCTAGCAAGTTTCAACATGAAGACCCTTATCTTACTCGCGAGAGTAATTATTTCACAGCTGCTTCTGCCCTCTTGGAAATTGTCGAAGCTAAATCTTCTAGGTTTCCCATAACTGTTGAAGATTTGTTTTCTATTTTAGATAAAGCAAGTGAAGGAACATTTCTGTTGGGTGAATTTTCATCAGTGAAGCAGTCTATGTTTGAGAAGAACAAAGATGATAATCATGATATTGGCCTTATTGACGTAGTTGCTTATACCAGCTTTATATTGGAAAGGCAATTGTTAGAAGAGGAGCGTAATCATTTCAAGTTGCTGGAAGAAAAAGCTAAGGCAAGTTATGAGGAGCTGATTAACGAAGAAGCTGCAGAGAGAAGTCAAAAAGCAAAGAAAAAGAAAAAGAAACAGCCAAAAGGTCAAAGAGATTGCACATTCAAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin_2

Protein Analysis

271

Amino Acids

31.39

Weight (kDa)

7.06

Isoelectric Point (pI)

44.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17720 AT5G46870 AT5G46870
fragaria_vesca	FvH4_5g22870 FvH4_7g34070 FvH4_7g34070 FvH4_7g34070
malus_domestica	MD01G1236900.v1.1 MD06G1025100.v1.1 MD06G1025200.v1.1 MD07G1309500.v1.1
prunus_persica	Prupe.2G327200_v2.0.a1 Prupe.5G029900_v2.0.a1
pyrus_communis	pycom07g28150
rosa_chinensis	RchiOBHm_Chr1g0384341 RchiOBHm_Chr7g0211571
rosa_laevigata	RLG00000002998 RLG00000026047
rosa_multiflora	Rmu_co8225890.1_g000001 Rmu_sc0016737.1_g000005 Rmu_ssc0000317.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247740 Rroxscaffold_4G00276760
rosa_rugosa	Rorug01G0447000 Rorug07G0126000
rosa_samantha	Rh1AG472300 Rh1BG430100 Rh1CG443000 Rh1DG462700 Rh7AG258300 Rh7BG252500 Rh7CG275400 Rh7DG265800
rosa_wichuraiana	Rw1G040030 Rw7G022090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	414
AcsI	RAATTY	2 cut(s)	317, 548
AcuI	CTGAAG	2 cut(s)	261, 323
AfaI	GTAC	2 cut(s)	300, 352
AflIII	ACRYGT	1 cut(s)	74
AgsI	TTSAA	5 cut(s)	209, 389, 494, 682, 808
AluBI	AGCT	7 cut(s)	254, 434, 464, 636, 701, 721, 737
AluI	AGCT	7 cut(s)	254, 434, 464, 636, 701, 721, 737
Alw26I	GTCTC	2 cut(s)	12, 106
AoxI	GGCC	1 cut(s)	607
ApeKI	GCWGC	2 cut(s)	434, 737
ApoI	RAATTY	2 cut(s)	317, 548
AsuHPI	GGTGA	3 cut(s)	87, 251, 557
AsuNHI	GCTAGC	1 cut(s)	377
AxyI	CCTNAGG	1 cut(s)	168
BauI	CACGAG	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	402
BbvI	GCAGC	2 cut(s)	421, 724
BccI	CCATC	1 cut(s)	107
BcgI	CGANNNNNNTGC	2 cut(s)	719, 753
BcoDI	GTCTC	2 cut(s)	12, 106
BfaI	CTAG	3 cut(s)	251, 378, 474
BfmI	CTRYAG	1 cut(s)	738
BglII	AGATCT	1 cut(s)	52
BisI	GCNGC	2 cut(s)	435, 738
BlsI	GCNGC	2 cut(s)	436, 739
BmcAI	AGTACT	1 cut(s)	300
BmiI	GGNNCC	1 cut(s)	63
BmsI	GCATC	1 cut(s)	232
BmtI	GCTAGC	1 cut(s)	381
BpiI	GAAGAC	1 cut(s)	402
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
Bpu10I	CCTNAGC	1 cut(s)	702
BpuEI	CTTGAG	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	594
BsaI	GGTCTC	1 cut(s)	12
Bse21I	CCTNAGG	1 cut(s)	168
Bse8I	GATNNNNATC	1 cut(s)	594
BseJI	GATNNNNATC	1 cut(s)	594
BseMII	CTCAG	2 cut(s)	70, 338
BseRI	GAGGAG	2 cut(s)	680, 731
BseXI	GCAGC	2 cut(s)	421, 724
Bsh1236I	CGCG	1 cut(s)	414
BshFI	GGCC	1 cut(s)	609
BsmAI	GTCTC	2 cut(s)	12, 106
BsnI	GGCC	1 cut(s)	609
Bso31I	GGTCTC	1 cut(s)	12
Bsp143I	GATC	1 cut(s)	52
Bsp68I	TCGCGA	1 cut(s)	414
BspANI	GGCC	1 cut(s)	609
BspCNI	CTCAG	2 cut(s)	69, 337
BspFNI	CGCG	1 cut(s)	414
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	1 cut(s)	63
BspMAI	CTGCAG	1 cut(s)	742
BspOI	GCTAGC	1 cut(s)	381
BspTNI	GGTCTC	1 cut(s)	12
BssMI	GATC	1 cut(s)	52
BssSI	CACGAG	1 cut(s)	13
Bst2BI	CACGAG	1 cut(s)	13
Bst4CI	ACNGT	1 cut(s)	490
Bst6I	CTCTTC	1 cut(s)	657
BstC8I	GCNNGC	1 cut(s)	379
BstDEI	CTNAG	4 cut(s)	56, 168, 324, 702
BstFNI	CGCG	1 cut(s)	414
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	2 cut(s)	12, 106
BstMBI	GATC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 251, 440
BstNSI	RCATGY	2 cut(s)	78, 134
BstSFI	CTRYAG	1 cut(s)	738
BstUI	CGCG	1 cut(s)	414
BstV1I	GCAGC	2 cut(s)	421, 724
BstV2I	GAAGAC	1 cut(s)	402
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
Bsu36I	CCTNAGG	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	609
BtsIMutI	CAGTG	1 cut(s)	564
BtuMI	TCGCGA	1 cut(s)	414
Cac8I	GCNNGC	1 cut(s)	379
CciI	TCATGA	1 cut(s)	598
Csp6I	GTAC	2 cut(s)	299, 351
CviAII	CATG	5 cut(s)	75, 116, 131, 392, 599
CviQI	GTAC	2 cut(s)	299, 351
DdeI	CTNAG	4 cut(s)	56, 168, 324, 702
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
Eam1104I	CTCTTC	1 cut(s)	657
EarI	CTCTTC	1 cut(s)	657
Eco31I	GGTCTC	1 cut(s)	12
Eco57I	CTGAAG	2 cut(s)	261, 323
Eco81I	CCTNAGG	1 cut(s)	168
FaeI	CATG	5 cut(s)	78, 119, 134, 395, 602
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	5 cut(s)	74, 115, 130, 391, 598
FauNDI	CATATG	1 cut(s)	331
Fnu4HI	GCNGC	2 cut(s)	435, 738
Fsp4HI	GCNGC	2 cut(s)	435, 738
FspBI	CTAG	3 cut(s)	251, 378, 474
GluI	GCNGC	2 cut(s)	435, 738
HaeIII	GGCC	1 cut(s)	609
Hin1II	CATG	5 cut(s)	78, 119, 134, 395, 602
HinfI	GANTC	2 cut(s)	155, 272
HphI	GGTGA	3 cut(s)	87, 251, 557
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	1 cut(s)	327
Hpy188III	TCNNGA	3 cut(s)	269, 413, 599
Hpy8I	GTNNAC	1 cut(s)	351
HpyAV	CCTTC	3 cut(s)	280, 298, 521
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	6 cut(s)	4, 83, 134, 335, 740, 801
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 251, 440
HpyF3I	CTNAG	4 cut(s)	56, 168, 324, 702
HpySE526I	ACGT	1 cut(s)	618
Hsp92II	CATG	5 cut(s)	78, 119, 134, 395, 602
Kzo9I	GATC	1 cut(s)	52
LmnI	GCTCC	2 cut(s)	667, 718
LpnPI	CCDG	4 cut(s)	43, 282, 646, 674
Lsp1109I	GCAGC	2 cut(s)	421, 724
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	3 cut(s)	251, 378, 474
MaeII	ACGT	1 cut(s)	618
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	9 cut(s)	267, 326, 407, 462, 506, 592, 674, 704, 743
MfeI	CAATTG	2 cut(s)	150, 653
MflI	RGATCY	1 cut(s)	52
MluCI	AATT	8 cut(s)	84, 103, 150, 317, 421, 453, 548, 653
MnlI	CCTC	5 cut(s)	33, 364, 455, 658, 709
MseI	TTAA	3 cut(s)	107, 341, 726
MspA1I	CMGCKG	1 cut(s)	434
MunI	CAATTG	2 cut(s)	150, 653
MvnI	CGCG	1 cut(s)	414
MwoI	GCNNNNNNNGC	3 cut(s)	145, 251, 440
NdeI	CATATG	1 cut(s)	331
NdeII	GATC	1 cut(s)	52
NheI	GCTAGC	1 cut(s)	377
NlaIII	CATG	5 cut(s)	78, 119, 134, 395, 602
NlaIV	GGNNCC	1 cut(s)	63
NruI	TCGCGA	1 cut(s)	414
NspI	RCATGY	2 cut(s)	78, 134
PagI	TCATGA	1 cut(s)	598
PciI	ACATGT	1 cut(s)	74
PfeI	GAWTC	2 cut(s)	155, 272
PkrI	GCNGC	2 cut(s)	436, 739
PscI	ACATGT	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	63
PstI	CTGCAG	1 cut(s)	742
PsuI	RGATCY	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	434
RruI	TCGCGA	1 cut(s)	414
RsaI	GTAC	2 cut(s)	300, 352
RsaNI	GTAC	2 cut(s)	299, 351
SaqAI	TTAA	3 cut(s)	107, 341, 726
SatI	GCNGC	2 cut(s)	435, 738
Sau3AI	GATC	1 cut(s)	52
ScaI	AGTACT	1 cut(s)	300
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	1 cut(s)	738
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
Sse9I	AATT	8 cut(s)	84, 103, 150, 317, 421, 453, 548, 653
SspMI	CTAG	3 cut(s)	251, 378, 474
TaaI	ACNGT	1 cut(s)	490
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	1 cut(s)	459
TasI	AATT	8 cut(s)	84, 103, 150, 317, 421, 453, 548, 653
TatI	WGTACW	1 cut(s)	298
TfiI	GAWTC	2 cut(s)	155, 272
Tru1I	TTAA	3 cut(s)	107, 341, 726
Tru9I	TTAA	3 cut(s)	107, 341, 726
TscAI	CASTG	1 cut(s)	564
TseI	GCWGC	2 cut(s)	434, 737
TspDTI	ATGAA	2 cut(s)	408, 543
TspRI	CASTG	1 cut(s)	564
XapI	RAATTY	2 cut(s)	317, 548
XceI	RCATGY	2 cut(s)	78, 134
XcmI	CCANNNNNNNNNTGG	1 cut(s)	640
XspI	CTAG	3 cut(s)	251, 378, 474
ZrmI	AGTACT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.