Rmu_sc0016737.1_g000005

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016737.1
OG0003548
Physical Location & Seq
Reverse (-)
13464 .. 14924
1461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016737.1_g000005.1.cds

Sequence Viewer

Length: 822 bp
atggacacgctgagatctaattccttgctgctggttgttccccatgacagttacaatgagacgtctcaggttgcatatgttaccttcaaggatgccagtggagcagacacatcgatcctcctttcggcaacagttaatgtaaatgctggtggccccaaagatgctgtccgaaaggcagaggatgttgtgagcagcatgctagcaaaagggttcattttgggaaaagatgctattagcaaggcaaaagcctttgatgagaaacaccagatctattccactgctacagccacagttgctacattggaccaaaagattggttttagtgagaaacttagtgccggcacatccatggtaaacgataaactgaggcaaatggatgaaaagtttcaggtctctgagaagacaaagtctgcatattcagctgcagggcaaacggtcagtactgcaggatctgcactcatgagcaaccgttacatattaactgggacagcatgggctaccggtgcttataatagggctgcccagacagcaaatgaagtgagccagaagacaaaggaaaaggttttagctgaggaagataaaaatggcaataaagcggaaggcagtcaaggggaaggcagtaaagcagaaggaagtcaagcggaaggcactaaagcggaaggcagtcaagcggatgacagtcaagcagatggcaataaagcggaaggcagtcaagcgggaggcaataaagcagaaggcaatagagcagaaggtagtcaagctgaaggcaataaagcggaagacagtaaagctgaaagcaataaagtggaaggcggttcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

273

Amino Acids

28.35

Weight (kDa)

5.21

Isoelectric Point (pI)

26.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 510
AatII GACGTC 1 cut(s) 65
AciI CCGC 8 cut(s) 596, 641, 656, 671, 701, 716, 776, 813
AclWI GGATC 2 cut(s) 109, 457
AcuI CTGAAG 1 cut(s) 783
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 1 cut(s) 442
AfiI CCNNNNNNNGG 1 cut(s) 124
AgeI ACCGGT 1 cut(s) 500
AgsI TTSAA 1 cut(s) 88
AluBI AGCT 4 cut(s) 422, 569, 761, 791
AluI AGCT 4 cut(s) 422, 569, 761, 791
Alw26I GTCTC 3 cut(s) 53, 69, 397
AlwI GGATC 2 cut(s) 109, 457
AlwNI CAGNNNCTG 1 cut(s) 452
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 4 cut(s) 28, 192, 422, 518
ArsI GACNNNNNNTTYG 2 cut(s) 150, 182
AsiGI ACCGGT 1 cut(s) 500
Asp700I GAANNNNTTC 1 cut(s) 384
AspS9I GGNCC 2 cut(s) 152, 304
AsuNHI GCTAGC 1 cut(s) 199
AvaII GGWCC 1 cut(s) 304
BbsI GAAGAC 3 cut(s) 407, 554, 786
BbvCI CCTCAGC 1 cut(s) 570
BbvI GCAGC 4 cut(s) 15, 204, 409, 505
BccI CCATC 1 cut(s) 683
BcgI CGANNNNNNTGC 2 cut(s) 93, 127
BcoDI GTCTC 3 cut(s) 53, 69, 397
BfaI CTAG 1 cut(s) 200
BfmI CTRYAG 3 cut(s) 282, 423, 444
BglII AGATCT 2 cut(s) 14, 267
BisI GCNGC 4 cut(s) 29, 193, 423, 519
BlsI GCNGC 4 cut(s) 30, 194, 424, 520
BmcAI AGTACT 1 cut(s) 442
Bme18I GGWCC 1 cut(s) 304
BmgT120I GGNCC 2 cut(s) 152, 304
BmiI GGNNCC 1 cut(s) 154
BmrI ACTGGG 1 cut(s) 492
BmsI GCATC 3 cut(s) 82, 151, 217
BmtI GCTAGC 1 cut(s) 203
BmuI ACTGGG 1 cut(s) 492
BpiI GAAGAC 3 cut(s) 407, 554, 786
Bpu10I CCTNAGC 1 cut(s) 570
Bsa29I ATCGAT 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 62
BsaI GGTCTC 1 cut(s) 397
BsaJI CCNNGG 1 cut(s) 348
BsaWI WCCGGW 1 cut(s) 500
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse118I RCCGGY 2 cut(s) 338, 500
Bse1I ACTGG 2 cut(s) 96, 487
BseCI ATCGAT 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 348
BseGI GGATG 5 cut(s) 97, 187, 344, 382, 679
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 4 cut(s) 80, 356, 387, 561
BseNI ACTGG 2 cut(s) 96, 487
BseXI GCAGC 4 cut(s) 15, 204, 409, 505
BsgI GTGCAG 1 cut(s) 438
BshFI GGCC 1 cut(s) 153
BshTI ACCGGT 1 cut(s) 500
BshVI ATCGAT 1 cut(s) 113
BsiSI CCGG 2 cut(s) 339, 501
BslFI GGGAC 1 cut(s) 499
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 3 cut(s) 53, 69, 397
BsmBI CGTCTC 2 cut(s) 53, 69
BsmFI GGGAC 1 cut(s) 499
BsnI GGCC 1 cut(s) 153
Bso31I GGTCTC 1 cut(s) 397
Bsp143I GATC 4 cut(s) 14, 114, 267, 449
Bsp19I CCATGG 1 cut(s) 348
BspACI CCGC 8 cut(s) 596, 641, 656, 671, 701, 716, 776, 813
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 4 cut(s) 79, 357, 388, 562
BspDI ATCGAT 1 cut(s) 113
BspHI TCATGA 1 cut(s) 459
BspLI GGNNCC 1 cut(s) 154
BspMAI CTGCAG 2 cut(s) 427, 448
BspOI GCTAGC 1 cut(s) 203
BspPI GGATC 2 cut(s) 109, 457
BspTNI GGTCTC 1 cut(s) 397
BsrFI RCCGGY 2 cut(s) 338, 500
BsrI ACTGG 2 cut(s) 96, 487
BssAI RCCGGY 2 cut(s) 338, 500
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 4 cut(s) 14, 114, 267, 449
BssNI GRCGYC 1 cut(s) 62
BssT1I CCWWGG 1 cut(s) 348
Bst4CI ACNGT 7 cut(s) 50, 133, 292, 436, 470, 680, 785
BstACI GRCGYC 1 cut(s) 62
BstAPI GCANNNNNTGC 1 cut(s) 452
BstC8I GCNNGC 3 cut(s) 197, 201, 340
BstDEI CTNAG 7 cut(s) 11, 66, 332, 365, 396, 570, 819
BstDSI CCRYGG 1 cut(s) 348
BstF5I GGATG 5 cut(s) 97, 187, 344, 382, 679
BstKTI GATC 4 cut(s) 17, 117, 270, 452
BstMAI GTCTC 3 cut(s) 53, 69, 397
BstMBI GATC 4 cut(s) 14, 114, 267, 449
BstMWI GCNNNNNNNGC 6 cut(s) 101, 293, 419, 452, 503, 527
BstNSI RCATGY 1 cut(s) 199
BstSFI CTRYAG 3 cut(s) 282, 423, 444
BstV1I GCAGC 4 cut(s) 15, 204, 409, 505
BstV2I GAAGAC 3 cut(s) 407, 554, 786
BstX2I RGATCY 3 cut(s) 14, 267, 449
BstXI CCANNNNNNTGG 1 cut(s) 314
BstYI RGATCY 3 cut(s) 14, 267, 449
Bsu15I ATCGAT 1 cut(s) 113
BsuRI GGCC 1 cut(s) 153
BsuTUI ATCGAT 1 cut(s) 113
BtgI CCRYGG 1 cut(s) 348
BtsCI GGATG 5 cut(s) 97, 187, 344, 382, 679
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 103, 276
Cac8I GCNNGC 3 cut(s) 197, 201, 340
CaiI CAGNNNCTG 1 cut(s) 452
CciI TCATGA 1 cut(s) 459
Cfr10I RCCGGY 2 cut(s) 338, 500
Cfr13I GGNCC 2 cut(s) 152, 304
ClaI ATCGAT 1 cut(s) 113
Csp6I GTAC 1 cut(s) 441
CspAI ACCGGT 1 cut(s) 500
CviAII CATG 5 cut(s) 44, 196, 349, 460, 492
CviQI GTAC 1 cut(s) 441
DdeI CTNAG 7 cut(s) 11, 66, 332, 365, 396, 570, 819
DpnI GATC 4 cut(s) 16, 116, 269, 451
DpnII GATC 4 cut(s) 14, 114, 267, 449
Eco130I CCWWGG 1 cut(s) 348
Eco31I GGTCTC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 783
EcoT14I CCWWGG 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 348
Esp3I CGTCTC 2 cut(s) 53, 69
FaeI CATG 5 cut(s) 47, 199, 352, 463, 495
FaqI GGGAC 1 cut(s) 499
FatI CATG 5 cut(s) 43, 195, 348, 459, 491
FauI CCCGC 1 cut(s) 709
FauNDI CATATG 1 cut(s) 76
Fnu4HI GCNGC 4 cut(s) 29, 193, 423, 519
FokI GGATG 5 cut(s) 104, 194, 331, 389, 686
Fsp4HI GCNGC 4 cut(s) 29, 193, 423, 519
FspBI CTAG 1 cut(s) 200
GluI GCNGC 4 cut(s) 29, 193, 423, 519
HaeIII GGCC 1 cut(s) 153
HapII CCGG 2 cut(s) 339, 501
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 5 cut(s) 47, 199, 352, 463, 495
HpaII CCGG 2 cut(s) 339, 501
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 2 cut(s) 170, 397
Hpy188III TCNNGA 1 cut(s) 460
Hpy8I GTNNAC 1 cut(s) 355
HpyCH4III ACNGT 7 cut(s) 50, 133, 292, 436, 470, 680, 785
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 5 cut(s) 74, 413, 425, 446, 455
HpyF10VI GCNNNNNNNGC 6 cut(s) 101, 293, 419, 452, 503, 527
HpyF3I CTNAG 7 cut(s) 11, 66, 332, 365, 396, 570, 819
HpySE526I ACGT 1 cut(s) 62
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 5 cut(s) 47, 199, 352, 463, 495
KroI GCCGGC 1 cut(s) 338
KroNI GCCGGC 1 cut(s) 340
Kzo9I GATC 4 cut(s) 14, 114, 267, 449
LmnI GCTCC 1 cut(s) 101
Lsp1109I GCAGC 4 cut(s) 15, 204, 409, 505
LweI GCATC 3 cut(s) 82, 151, 217
MaeI CTAG 1 cut(s) 200
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 3 cut(s) 50, 79, 470
MalI GATC 4 cut(s) 16, 116, 269, 451
MboI GATC 4 cut(s) 14, 114, 267, 449
MboII GAAGA 4 cut(s) 412, 559, 587, 791
MflI RGATCY 3 cut(s) 14, 267, 449
MluCI AATT 1 cut(s) 19
MnlI CCTC 5 cut(s) 128, 172, 360, 565, 713
MroNI GCCGGC 1 cut(s) 338
MroXI GAANNNNTTC 1 cut(s) 384
MseI TTAA 2 cut(s) 135, 479
MslI CAYNNNNRTG 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 2 cut(s) 339, 501
MwoI GCNNNNNNNGC 6 cut(s) 101, 293, 419, 452, 503, 527
NaeI GCCGGC 1 cut(s) 340
NcoI CCATGG 1 cut(s) 348
NdeI CATATG 1 cut(s) 76
NdeII GATC 4 cut(s) 14, 114, 267, 449
NgoMIV GCCGGC 1 cut(s) 338
NheI GCTAGC 1 cut(s) 199
NlaIII CATG 5 cut(s) 47, 199, 352, 463, 495
NlaIV GGNNCC 1 cut(s) 154
NspI RCATGY 1 cut(s) 199
PaeI GCATGC 1 cut(s) 199
PagI TCATGA 1 cut(s) 459
PdiI GCCGGC 1 cut(s) 340
PdmI GAANNNNTTC 1 cut(s) 384
PflFI GACNNNGTC 1 cut(s) 406
PinAI ACCGGT 1 cut(s) 500
PkrI GCNGC 4 cut(s) 30, 194, 424, 520
PsiI TTATAA 1 cut(s) 510
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 2 cut(s) 152, 304
PstI CTGCAG 2 cut(s) 427, 448
PstNI CAGNNNCTG 1 cut(s) 452
PsuI RGATCY 3 cut(s) 14, 267, 449
PsyI GACNNNGTC 1 cut(s) 406
PvuII CAGCTG 1 cut(s) 422
RsaI GTAC 1 cut(s) 442
RsaNI GTAC 1 cut(s) 441
RseI CAYNNNNRTG 1 cut(s) 347
SaqAI TTAA 2 cut(s) 135, 479
SatI GCNGC 4 cut(s) 29, 193, 423, 519
Sau3AI GATC 4 cut(s) 14, 114, 267, 449
Sau96I GGNCC 2 cut(s) 152, 304
ScaI AGTACT 1 cut(s) 442
SfaNI GCATC 3 cut(s) 82, 151, 217
SfcI CTRYAG 3 cut(s) 282, 423, 444
SinI GGWCC 1 cut(s) 304
SmiMI CAYNNNNRTG 1 cut(s) 347
SphI GCATGC 1 cut(s) 199
Sse9I AATT 1 cut(s) 19
SsiI CCGC 8 cut(s) 596, 641, 656, 671, 701, 716, 776, 813
SspMI CTAG 1 cut(s) 200
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 7 cut(s) 50, 133, 292, 436, 470, 680, 785
TaiI ACGT 1 cut(s) 65
TaqI TCGA 1 cut(s) 113
TasI AATT 1 cut(s) 19
TatI WGTACW 1 cut(s) 440
Tru1I TTAA 2 cut(s) 135, 479
Tru9I TTAA 2 cut(s) 135, 479
TscAI CASTG 2 cut(s) 103, 283
TseI GCWGC 4 cut(s) 28, 192, 422, 518
TspDTI ATGAA 3 cut(s) 202, 393, 549
TspRI CASTG 2 cut(s) 103, 283
Tth111I GACNNNGTC 1 cut(s) 406
VpaK11BI GGWCC 1 cut(s) 304
XceI RCATGY 1 cut(s) 199
XmnI GAANNNNTTC 1 cut(s) 384
XspI CTAG 1 cut(s) 200
ZraI GACGTC 1 cut(s) 63
ZrmI AGTACT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.