Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003548

Physical Location & Seq

Genomic Coordinates Forward (+)

28277662 .. 28281460

Gene Structure 3799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG265800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTCTGTAACCATAACTCTCGCTCCAGAATACAAGTTGCCACCTTCTGCAATAGCACCTTCTGTAACTGATAAAGCCCCTGGTGGTGCTGAATCTGCATTTCGGAAGGCAGAGGATGTTGTTAGCGGCATGCTTGCTAAGGGATTTATCTTGGGGAAAGATGCAGTCAACAAGGCAAAGGGCTTTGATGAGAAACACCAGTTGACCTCAACAGCTTCAGAAAAGGTTGCTTCTTTTGACAAAAAGATAGGGCTCACTGAGAAAATAAGTGTTGGTACTTCTGTGGTGAGTGAAAAAGTTCGCGAAGTGGATCAGAAATTCCAGGTCTCTGAGAAGACCAAGTCAGCTTTTGCTGCTGCTGAGCAGACAGTTAGCAATGCTGGATCTGCCATTATGAAGAACCGATATGTGTTTACTTCGGCTGCATGGGTTTCGGGTGCTTTCAACAAGGTTGCAAAGGCAGCTGGTGATGTTGGTCAGAAGACGAAAGAAAAAGTTGAAATGGTGGAAGAGGAAAAGAACAGAAAAATTGAGGATGACTATGCTCAAGTTCTGTCCGAGTCTCCAAAAGCATCTGGACCAAGTGGGCATGAACCTGTTAAAGGTTTGATCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

205

Amino Acids

21.75

Weight (kDa)

8.87

Isoelectric Point (pI)

35.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17720 AT5G46870 AT5G46870
fragaria_vesca	FvH4_5g22870 FvH4_7g34070 FvH4_7g34070 FvH4_7g34070
malus_domestica	MD01G1236900.v1.1 MD06G1025100.v1.1 MD06G1025200.v1.1 MD07G1309500.v1.1
prunus_persica	Prupe.2G327200_v2.0.a1 Prupe.5G029900_v2.0.a1
pyrus_communis	pycom07g28150
rosa_chinensis	RchiOBHm_Chr1g0384341 RchiOBHm_Chr7g0211571
rosa_laevigata	RLG00000002998 RLG00000026047
rosa_multiflora	Rmu_co8225890.1_g000001 Rmu_sc0016737.1_g000005 Rmu_ssc0000317.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247740 Rroxscaffold_4G00276760
rosa_rugosa	Rorug01G0447000 Rorug07G0126000
rosa_samantha	Rh1AG472300 Rh1BG430100 Rh1CG443000 Rh1DG462700 Rh7AG258300 Rh7BG252500 Rh7CG275400 Rh7DG265800
rosa_wichuraiana	Rw1G040030 Rw7G022090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	303
AciI	CCGC	1 cut(s)	126
AclWI	GGATC	3 cut(s)	318, 391, 604
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	1 cut(s)	277
AfiI	CCNNNNNNNGG	1 cut(s)	602
AgsI	TTSAA	2 cut(s)	445, 500
AjnI	CCWGG	2 cut(s)	79, 321
AluBI	AGCT	3 cut(s)	215, 347, 464
AluI	AGCT	3 cut(s)	215, 347, 464
Alw26I	GTCTC	2 cut(s)	331, 567
AlwI	GGATC	3 cut(s)	318, 391, 604
ApeKI	GCWGC	4 cut(s)	353, 356, 422, 461
ApoI	RAATTY	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	578
AsuHPI	GGTGA	2 cut(s)	298, 479
AvaII	GGWCC	1 cut(s)	578
BaeI	ACNNNNGTAYC	2 cut(s)	267, 300
BanII	GRGCYC	1 cut(s)	255
BbsI	GAAGAC	2 cut(s)	341, 488
BbvI	GCAGC	4 cut(s)	340, 343, 409, 473
BcgI	CGANNNNNNTGC	2 cut(s)	414, 448
BciT130I	CCWGG	2 cut(s)	81, 323
BcoDI	GTCTC	2 cut(s)	331, 567
BisI	GCNGC	5 cut(s)	127, 354, 357, 423, 462
BlpI	GCTNAGC	1 cut(s)	360
BlsI	GCNGC	5 cut(s)	128, 355, 358, 424, 463
Bme1390I	CCNGG	2 cut(s)	81, 323
Bme18I	GGWCC	1 cut(s)	578
BmgT120I	GGNCC	1 cut(s)	578
BmrFI	CCNGG	2 cut(s)	81, 323
BmsI	GCATC	2 cut(s)	151, 581
BpiI	GAAGAC	2 cut(s)	341, 488
BpmI	CTGGAG	1 cut(s)	9
Bpu10I	CCTNAGC	1 cut(s)	138
Bpu1102I	GCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	531
BsaI	GGTCTC	1 cut(s)	331
BsaJI	CCNNGG	1 cut(s)	79
BsaXI	ACNNNNNCTCC	2 cut(s)	7, 37
Bsc4I	CCNNNNNNNGG	1 cut(s)	602
Bse1I	ACTGG	1 cut(s)	199
Bse3DI	GCAATG	1 cut(s)	382
BseBI	CCWGG	2 cut(s)	81, 323
BseDI	CCNNGG	1 cut(s)	79
BseGI	GGATG	2 cut(s)	121, 541
BseLI	CCNNNNNNNGG	1 cut(s)	602
BseMI	GCAATG	1 cut(s)	382
BseMII	CTCAG	3 cut(s)	249, 321, 351
BseNI	ACTGG	1 cut(s)	199
BseXI	GCAGC	4 cut(s)	340, 343, 409, 473
Bsh1236I	CGCG	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	602
BsmAI	GTCTC	2 cut(s)	331, 567
Bso31I	GGTCTC	1 cut(s)	331
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	3 cut(s)	310, 383, 609
Bsp1720I	GCTNAGC	1 cut(s)	360
Bsp68I	TCGCGA	1 cut(s)	303
BspACI	CCGC	1 cut(s)	126
BspCNI	CTCAG	3 cut(s)	250, 322, 352
BspFNI	CGCG	1 cut(s)	303
BspPI	GGATC	3 cut(s)	318, 391, 604
BspTNI	GGTCTC	1 cut(s)	331
BsrDI	GCAATG	1 cut(s)	382
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	3 cut(s)	310, 383, 609
Bst2UI	CCWGG	2 cut(s)	81, 323
Bst4CI	ACNGT	1 cut(s)	370
Bst6I	CTCTTC	1 cut(s)	504
BstC8I	GCNNGC	2 cut(s)	131, 135
BstDEI	CTNAG	4 cut(s)	138, 258, 330, 360
BstENI	CCTNNNNNAGG	1 cut(s)	600
BstF5I	GGATG	2 cut(s)	121, 541
BstFNI	CGCG	1 cut(s)	303
BstKTI	GATC	3 cut(s)	313, 386, 612
BstMAI	GTCTC	2 cut(s)	331, 567
BstMBI	GATC	3 cut(s)	310, 383, 609
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 353, 386, 461
BstNI	CCWGG	2 cut(s)	81, 323
BstNSI	RCATGY	1 cut(s)	133
BstSCI	CCNGG	2 cut(s)	79, 321
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	4 cut(s)	340, 343, 409, 473
BstV2I	GAAGAC	2 cut(s)	341, 488
BstX2I	RGATCY	1 cut(s)	383
BstYI	RGATCY	1 cut(s)	383
BtsCI	GGATG	2 cut(s)	121, 541
BtsIMutI	CAGTG	1 cut(s)	255
BtuMI	TCGCGA	1 cut(s)	303
Cac8I	GCNNGC	2 cut(s)	131, 135
Cfr13I	GGNCC	1 cut(s)	578
Csp6I	GTAC	1 cut(s)	276
CviAII	CATG	3 cut(s)	130, 426, 590
CviJI	RGCY	7 cut(s)	77, 183, 215, 253, 347, 422, 464
CviKI_1	RGCY	7 cut(s)	77, 183, 215, 253, 347, 422, 464
CviQI	GTAC	1 cut(s)	276
DdeI	CTNAG	4 cut(s)	138, 258, 330, 360
DpnI	GATC	3 cut(s)	312, 385, 611
DpnII	GATC	3 cut(s)	310, 383, 609
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
Eco24I	GRGCYC	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	331
Eco47I	GGWCC	1 cut(s)	578
Eco57I	CTGAAG	1 cut(s)	201
EcoNI	CCTNNNNNAGG	1 cut(s)	600
EcoRII	CCWGG	2 cut(s)	79, 321
EcoT38I	GRGCYC	1 cut(s)	255
FaeI	CATG	3 cut(s)	133, 429, 593
FaiI	YATR	7 cut(s)	14, 131, 395, 408, 427, 543, 591
FatI	CATG	3 cut(s)	129, 425, 589
Fnu4HI	GCNGC	5 cut(s)	127, 354, 357, 423, 462
FokI	GGATG	2 cut(s)	128, 548
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	5 cut(s)	127, 354, 357, 423, 462
GluI	GCNGC	5 cut(s)	127, 354, 357, 423, 462
GsuI	CTGGAG	1 cut(s)	9
Hin1II	CATG	3 cut(s)	133, 429, 593
HincII	GTYRAC	2 cut(s)	169, 204
HindII	GTYRAC	2 cut(s)	169, 204
HinfI	GANTC	2 cut(s)	92, 560
HphI	GGTGA	2 cut(s)	298, 479
Hpy166II	GTNNAC	3 cut(s)	169, 204, 414
Hpy188I	TCNGA	6 cut(s)	105, 220, 315, 331, 480, 559
Hpy188III	TCNNGA	3 cut(s)	26, 302, 576
Hpy8I	GTNNAC	3 cut(s)	169, 204, 414
HpyAV	CCTTC	3 cut(s)	54, 69, 100
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4V	TGCA	5 cut(s)	50, 98, 164, 425, 455
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 353, 386, 461
HpyF3I	CTNAG	4 cut(s)	138, 258, 330, 360
Hsp92II	CATG	3 cut(s)	133, 429, 593
Kzo9I	GATC	3 cut(s)	310, 383, 609
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	4 cut(s)	340, 343, 409, 473
LweI	GCATC	2 cut(s)	151, 581
MaeIII	GTNAC	2 cut(s)	7, 64
MalI	GATC	3 cut(s)	312, 385, 611
MboI	GATC	3 cut(s)	310, 383, 609
MboII	GAAGA	4 cut(s)	346, 409, 493, 521
MflI	RGATCY	1 cut(s)	383
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	2 cut(s)	317, 528
MlyI	GAGTC	1 cut(s)	569
MnlI	CCTC	4 cut(s)	106, 217, 505, 526
MroXI	GAANNNNTTC	1 cut(s)	297
MseI	TTAA	1 cut(s)	600
MspA1I	CMGCKG	1 cut(s)	464
MspR9I	CCNGG	2 cut(s)	81, 323
MvaI	CCWGG	2 cut(s)	81, 323
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	4 cut(s)	95, 353, 386, 461
NdeII	GATC	3 cut(s)	310, 383, 609
NlaIII	CATG	3 cut(s)	133, 429, 593
NruI	TCGCGA	1 cut(s)	303
NspI	RCATGY	1 cut(s)	133
PaeI	GCATGC	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	92
PflFI	GACNNNGTC	1 cut(s)	340
PkrI	GCNGC	5 cut(s)	128, 355, 358, 424, 463
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
Psp6I	CCWGG	2 cut(s)	79, 321
PspGI	CCWGG	2 cut(s)	79, 321
PspPI	GGNCC	1 cut(s)	578
PsuI	RGATCY	1 cut(s)	383
PsyI	GACNNNGTC	1 cut(s)	340
PvuII	CAGCTG	1 cut(s)	464
RruI	TCGCGA	1 cut(s)	303
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	600
SatI	GCNGC	5 cut(s)	127, 354, 357, 423, 462
Sau3AI	GATC	3 cut(s)	310, 383, 609
Sau96I	GGNCC	1 cut(s)	578
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	2 cut(s)	81, 323
SduI	GDGCHC	1 cut(s)	255
SfaNI	GCATC	2 cut(s)	151, 581
SinI	GGWCC	1 cut(s)	578
SmlI	CTYRAG	1 cut(s)	546
SmoI	CTYRAG	1 cut(s)	546
SphI	GCATGC	1 cut(s)	133
Sse9I	AATT	2 cut(s)	317, 528
SsiI	CCGC	1 cut(s)	126
StyD4I	CCNGG	2 cut(s)	79, 321
TaaI	ACNGT	1 cut(s)	370
TasI	AATT	2 cut(s)	317, 528
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	1 cut(s)	600
Tru9I	TTAA	1 cut(s)	600
TscAI	CASTG	1 cut(s)	262
TseI	GCWGC	4 cut(s)	353, 356, 422, 461
TspDTI	ATGAA	2 cut(s)	410, 606
TspRI	CASTG	1 cut(s)	262
Tth111I	GACNNNGTC	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	578
XagI	CCTNNNNNAGG	1 cut(s)	600
XapI	RAATTY	1 cut(s)	317
XceI	RCATGY	1 cut(s)	133
XmnI	GAANNNNTTC	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.