Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003548

Physical Location & Seq

Genomic Coordinates Reverse (-)

3491546 .. 3495534

Gene Structure 3989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G029900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTCGGTACAAACCATCAAGGTCAGCAATCTTTCCTTGGGTGCAAGTGAGAGAGACATAAAGGAGTTCTTTTCTTTTTCTGGTGATATTGCATATGTCGAAATGATGAGTGATACTGAGCGGTCCCAAATCGCTTACGTTACCTTCAAGGATGTACAAGGAGCTGAGACTGCAGTTCTCCTTTCGGGAGCGACAATAGTGGATATGTCTGTCACCATAACTCTGGCTCCAGATTACGAGTTGCCACCTGCTGCTACAGCAGCCAATGTAACTGAGAATAAATCGCCTGGTGGGGCTGAATCTGCATTACGGAAGGCAGAGGATGTTGTTAGTGGCATGCTTGCCAAGGGGTTTGTCCTGGGCAAAGATGCAGTCAACAAGGCAAAGAATTTTGATGAGAAGCACCAGTTGACCTCAACAGCTTCAGAAAAAGTTGCTTCTTTTGACAAAAAGATTGGGCTCAGTGAGAAAATAAGCGCTGGTACCTCTGTGGTTGGTGACAAAGTTCGCGAAGTGGATCAGAAATTTCAGGTCTCGGAGAAAACCAAATCAGCTTTTGCAGCTGCTGAGCAGACAGTGAGTAACGCTGGATCTGCTATAATGAAGAACCGGTATGTGTTTACCAGTGCTTCATGGGTTACAGGTGCTTTTAATAAGGTTGCAAAGGCAGCTGGGGAGGTTGGTCAGAAAACAAAAGAGAAAGTGGGAATGGTTGAAGAGGAGAAACATAGGAAAATAGAGGATGACTATGCTCAAGTTCTATCTGAGTCTCCAAAAGCATCTGCGCCATCCGAGCATGACCCGTCCAAGCCAGAACCTGTTAAAGGTTTGATCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

280

Amino Acids

29.77

Weight (kDa)

5.61

Isoelectric Point (pI)

31.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17720 AT5G46870 AT5G46870
fragaria_vesca	FvH4_5g22870 FvH4_7g34070 FvH4_7g34070 FvH4_7g34070
malus_domestica	MD01G1236900.v1.1 MD06G1025100.v1.1 MD06G1025200.v1.1 MD07G1309500.v1.1
prunus_persica	Prupe.2G327200_v2.0.a1 Prupe.5G029900_v2.0.a1
pyrus_communis	pycom07g28150
rosa_chinensis	RchiOBHm_Chr1g0384341 RchiOBHm_Chr7g0211571
rosa_laevigata	RLG00000002998 RLG00000026047
rosa_multiflora	Rmu_co8225890.1_g000001 Rmu_sc0016737.1_g000005 Rmu_ssc0000317.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247740 Rroxscaffold_4G00276760
rosa_rugosa	Rorug01G0447000 Rorug07G0126000
rosa_samantha	Rh1AG472300 Rh1BG430100 Rh1CG443000 Rh1DG462700 Rh7AG258300 Rh7BG252500 Rh7CG275400 Rh7DG265800
rosa_wichuraiana	Rw1G040030 Rw7G022090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	256
Acc36I	ACCTGC	1 cut(s)	256
Acc65I	GGTACC	1 cut(s)	482
AccB1I	GGYRCC	1 cut(s)	482
AccBSI	CCGCTC	1 cut(s)	121
AccII	CGCG	1 cut(s)	510
AciI	CCGC	1 cut(s)	121
AclWI	GGATC	3 cut(s)	525, 598, 826
AcsI	RAATTY	2 cut(s)	388, 524
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	3 cut(s)	9, 156, 484
AfeI	AGCGCT	1 cut(s)	478
AfiI	CCNNNNNNNGG	1 cut(s)	824
AgeI	ACCGGT	1 cut(s)	609
AgsI	TTSAA	2 cut(s)	148, 716
AjnI	CCWGG	2 cut(s)	286, 357
AluBI	AGCT	5 cut(s)	164, 422, 554, 563, 671
AluI	AGCT	5 cut(s)	164, 422, 554, 563, 671
Alw26I	GTCTC	4 cut(s)	48, 161, 538, 774
AlwI	GGATC	3 cut(s)	525, 598, 826
AlwNI	CAGNNNCTG	2 cut(s)	566, 818
Aor51HI	AGCGCT	1 cut(s)	478
ApeKI	GCWGC	5 cut(s)	251, 260, 560, 563, 668
ApoI	RAATTY	2 cut(s)	388, 524
ArsI	GACNNNNNNTTYG	2 cut(s)	357, 389
AsiGI	ACCGGT	1 cut(s)	609
Asp718I	GGTACC	1 cut(s)	482
AspLEI	GCGC	2 cut(s)	479, 787
AspS9I	GGNCC	1 cut(s)	123
AsuHPI	GGTGA	3 cut(s)	95, 205, 509
AvaII	GGWCC	1 cut(s)	123
BaeI	ACNNNNGTAYC	2 cut(s)	474, 507
BanI	GGYRCC	1 cut(s)	482
BanII	GRGCYC	1 cut(s)	462
BbvI	GCAGC	5 cut(s)	238, 272, 550, 572, 680
BccI	CCATC	2 cut(s)	23, 796
BciT130I	CCWGG	2 cut(s)	288, 359
BcoDI	GTCTC	4 cut(s)	48, 161, 538, 774
BfmI	CTRYAG	2 cut(s)	171, 255
BfoI	RGCGCY	1 cut(s)	480
BfuAI	ACCTGC	1 cut(s)	256
BisI	GCNGC	5 cut(s)	252, 261, 561, 564, 669
BlpI	GCTNAGC	1 cut(s)	567
BlsI	GCNGC	5 cut(s)	253, 262, 562, 565, 670
Bme1390I	CCNGG	2 cut(s)	288, 359
Bme18I	GGWCC	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	3 cut(s)	125, 228, 484
BmrFI	CCNGG	2 cut(s)	288, 359
BmsI	GCATC	2 cut(s)	358, 788
BpmI	CTGGAG	1 cut(s)	213
Bpu1102I	GCTNAGC	1 cut(s)	567
BpuEI	CTTGAG	1 cut(s)	738
BsaI	GGTCTC	1 cut(s)	538
BsaJI	CCNNGG	3 cut(s)	36, 345, 358
BsaWI	WCCGGW	1 cut(s)	609
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bsc4I	CCNNNNNNNGG	1 cut(s)	824
Bse118I	RCCGGY	1 cut(s)	609
Bse1I	ACTGG	2 cut(s)	406, 624
BseBI	CCWGG	2 cut(s)	288, 359
BseDI	CCNNGG	3 cut(s)	36, 345, 358
BseGI	GGATG	4 cut(s)	157, 328, 748, 788
BseLI	CCNNNNNNNGG	1 cut(s)	824
BseMII	CTCAG	6 cut(s)	108, 156, 264, 475, 558, 756
BseNI	ACTGG	2 cut(s)	406, 624
BseRI	GAGGAG	1 cut(s)	734
BseXI	GCAGC	5 cut(s)	238, 272, 550, 572, 680
BseYI	CCCAGC	1 cut(s)	671
Bsh1236I	CGCG	1 cut(s)	510
BshNI	GGYRCC	1 cut(s)	482
BshTI	ACCGGT	1 cut(s)	609
BsiSI	CCGG	1 cut(s)	610
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	1 cut(s)	824
BsmAI	GTCTC	4 cut(s)	48, 161, 538, 774
BsmFI	GGGAC	1 cut(s)	109
Bso31I	GGTCTC	1 cut(s)	538
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp1407I	TGTACA	1 cut(s)	154
Bsp143I	GATC	3 cut(s)	517, 590, 831
Bsp1720I	GCTNAGC	1 cut(s)	567
Bsp68I	TCGCGA	1 cut(s)	510
BspACI	CCGC	1 cut(s)	121
BspCNI	CTCAG	6 cut(s)	109, 157, 265, 474, 559, 757
BspFNI	CGCG	1 cut(s)	510
BspLI	GGNNCC	3 cut(s)	125, 228, 484
BspMAI	CTGCAG	1 cut(s)	175
BspMI	ACCTGC	1 cut(s)	256
BspPI	GGATC	3 cut(s)	525, 598, 826
BspT107I	GGYRCC	1 cut(s)	482
BspTNI	GGTCTC	1 cut(s)	538
BsrBI	CCGCTC	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	609
BsrGI	TGTACA	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	406, 624
BssAI	RCCGGY	1 cut(s)	609
BssECI	CCNNGG	3 cut(s)	36, 345, 358
BssMI	GATC	3 cut(s)	517, 590, 831
BssT1I	CCWWGG	2 cut(s)	36, 345
Bst2UI	CCWGG	2 cut(s)	288, 359
Bst4CI	ACNGT	1 cut(s)	577
Bst6I	CTCTTC	1 cut(s)	711
BstAUI	TGTACA	1 cut(s)	154
BstC8I	GCNNGC	2 cut(s)	338, 342
BstDEI	CTNAG	6 cut(s)	117, 165, 273, 461, 567, 765
BstENI	CCTNNNNNAGG	1 cut(s)	822
BstF5I	GGATG	4 cut(s)	157, 328, 748, 788
BstFNI	CGCG	1 cut(s)	510
BstH2I	RGCGCY	1 cut(s)	480
BstHHI	GCGC	2 cut(s)	479, 787
BstKTI	GATC	3 cut(s)	520, 593, 834
BstMAI	GTCTC	4 cut(s)	48, 161, 538, 774
BstMBI	GATC	3 cut(s)	517, 590, 831
BstMWI	GCNNNNNNNGC	8 cut(s)	170, 257, 260, 302, 560, 593, 668, 793
BstNI	CCWGG	2 cut(s)	288, 359
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	2 cut(s)	286, 357
BstSFI	CTRYAG	2 cut(s)	171, 255
BstUI	CGCG	1 cut(s)	510
BstV1I	GCAGC	5 cut(s)	238, 272, 550, 572, 680
BstX2I	RGATCY	1 cut(s)	590
BstXI	CCANNNNNNTGG	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	590
BtsCI	GGATG	4 cut(s)	157, 328, 748, 788
BtsIMutI	CAGTG	3 cut(s)	469, 582, 631
BtuMI	TCGCGA	1 cut(s)	510
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	2 cut(s)	338, 342
CaiI	CAGNNNCTG	2 cut(s)	566, 818
CfoI	GCGC	2 cut(s)	479, 787
Cfr10I	RCCGGY	1 cut(s)	609
Cfr13I	GGNCC	1 cut(s)	123
Csp6I	GTAC	3 cut(s)	8, 155, 483
CspAI	ACCGGT	1 cut(s)	609
CviAII	CATG	3 cut(s)	337, 633, 797
CviQI	GTAC	3 cut(s)	8, 155, 483
DdeI	CTNAG	6 cut(s)	117, 165, 273, 461, 567, 765
DpnI	GATC	3 cut(s)	519, 592, 833
DpnII	GATC	3 cut(s)	517, 590, 831
Eam1104I	CTCTTC	1 cut(s)	711
EarI	CTCTTC	1 cut(s)	711
Eco130I	CCWWGG	2 cut(s)	36, 345
Eco24I	GRGCYC	1 cut(s)	462
Eco31I	GGTCTC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	123
Eco47III	AGCGCT	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	408
EcoNI	CCTNNNNNAGG	1 cut(s)	822
EcoRII	CCWGG	2 cut(s)	286, 357
EcoT14I	CCWWGG	2 cut(s)	36, 345
EcoT38I	GRGCYC	1 cut(s)	462
ErhI	CCWWGG	2 cut(s)	36, 345
FaeI	CATG	3 cut(s)	340, 636, 800
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	3 cut(s)	336, 632, 796
FauNDI	CATATG	1 cut(s)	94
Fnu4HI	GCNGC	5 cut(s)	252, 261, 561, 564, 669
FokI	GGATG	4 cut(s)	164, 335, 755, 775
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	5 cut(s)	252, 261, 561, 564, 669
GlaI	GCGC	2 cut(s)	478, 786
GluI	GCNGC	5 cut(s)	252, 261, 561, 564, 669
GsaI	CCCAGC	1 cut(s)	675
GsuI	CTGGAG	1 cut(s)	213
HaeII	RGCGCY	1 cut(s)	480
HapII	CCGG	1 cut(s)	610
HhaI	GCGC	2 cut(s)	479, 787
Hin1II	CATG	3 cut(s)	340, 636, 800
Hin6I	GCGC	2 cut(s)	477, 785
HinP1I	GCGC	2 cut(s)	477, 785
HincII	GTYRAC	2 cut(s)	376, 411
HindII	GTYRAC	2 cut(s)	376, 411
HinfI	GANTC	2 cut(s)	299, 767
HpaII	CCGG	1 cut(s)	610
HphI	GGTGA	3 cut(s)	95, 205, 509
Hpy166II	GTNNAC	3 cut(s)	376, 411, 621
Hpy188I	TCNGA	7 cut(s)	427, 522, 538, 687, 766, 793, 839
Hpy188III	TCNNGA	3 cut(s)	186, 230, 509
Hpy8I	GTNNAC	3 cut(s)	376, 411, 621
HpyAV	CCTTC	2 cut(s)	154, 307
HpyCH4III	ACNGT	1 cut(s)	577
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	7 cut(s)	44, 92, 173, 305, 371, 560, 662
HpyF10VI	GCNNNNNNNGC	8 cut(s)	170, 257, 260, 302, 560, 593, 668, 793
HpyF3I	CTNAG	6 cut(s)	117, 165, 273, 461, 567, 765
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	3 cut(s)	340, 636, 800
HspAI	GCGC	2 cut(s)	477, 785
KpnI	GGTACC	1 cut(s)	486
Kzo9I	GATC	3 cut(s)	517, 590, 831
LmnI	GCTCC	3 cut(s)	161, 188, 232
Lsp1109I	GCAGC	5 cut(s)	238, 272, 550, 572, 680
LweI	GCATC	2 cut(s)	358, 788
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	6 cut(s)	139, 211, 268, 497, 581, 637
MalI	GATC	3 cut(s)	519, 592, 833
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	3 cut(s)	517, 590, 831
MboII	GAAGA	2 cut(s)	616, 728
MflI	RGATCY	1 cut(s)	590
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	2 cut(s)	388, 524
MlyI	GAGTC	1 cut(s)	776
MnlI	CCTC	6 cut(s)	313, 424, 496, 670, 712, 733
MseI	TTAA	2 cut(s)	651, 822
MspA1I	CMGCKG	2 cut(s)	563, 671
MspI	CCGG	1 cut(s)	610
MspR9I	CCNGG	2 cut(s)	288, 359
MvaI	CCWGG	2 cut(s)	288, 359
MvnI	CGCG	1 cut(s)	510
MwoI	GCNNNNNNNGC	8 cut(s)	170, 257, 260, 302, 560, 593, 668, 793
NdeI	CATATG	1 cut(s)	94
NdeII	GATC	3 cut(s)	517, 590, 831
NlaIII	CATG	3 cut(s)	340, 636, 800
NlaIV	GGNNCC	3 cut(s)	125, 228, 484
NmuCI	GTSAC	2 cut(s)	211, 497
NruI	TCGCGA	1 cut(s)	510
NspI	RCATGY	1 cut(s)	340
PaeI	GCATGC	1 cut(s)	340
PaqCI	CACCTGC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	299
PinAI	ACCGGT	1 cut(s)	609
PkrI	GCNGC	5 cut(s)	253, 262, 562, 565, 670
PleI	GAGTC	1 cut(s)	775
PpsI	GAGTC	1 cut(s)	775
Psp6I	CCWGG	2 cut(s)	286, 357
PspFI	CCCAGC	1 cut(s)	671
PspGI	CCWGG	2 cut(s)	286, 357
PspN4I	GGNNCC	3 cut(s)	125, 228, 484
PspPI	GGNCC	1 cut(s)	123
PstI	CTGCAG	1 cut(s)	175
PstNI	CAGNNNCTG	2 cut(s)	566, 818
PsuI	RGATCY	1 cut(s)	590
PvuII	CAGCTG	2 cut(s)	563, 671
RruI	TCGCGA	1 cut(s)	510
RsaI	GTAC	3 cut(s)	9, 156, 484
RsaNI	GTAC	3 cut(s)	8, 155, 483
SaqAI	TTAA	2 cut(s)	651, 822
SatI	GCNGC	5 cut(s)	252, 261, 561, 564, 669
Sau3AI	GATC	3 cut(s)	517, 590, 831
Sau96I	GGNCC	1 cut(s)	123
SchI	GAGTC	1 cut(s)	776
ScrFI	CCNGG	2 cut(s)	288, 359
SduI	GDGCHC	1 cut(s)	462
SfaNI	GCATC	2 cut(s)	358, 788
SfcI	CTRYAG	2 cut(s)	171, 255
SinI	GGWCC	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	753
SmoI	CTYRAG	1 cut(s)	753
SphI	GCATGC	1 cut(s)	340
Sse9I	AATT	2 cut(s)	388, 524
SsiI	CCGC	1 cut(s)	121
StyD4I	CCNGG	2 cut(s)	286, 357
StyI	CCWWGG	2 cut(s)	36, 345
TaaI	ACNGT	1 cut(s)	577
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	1 cut(s)	99
TasI	AATT	2 cut(s)	388, 524
TatI	WGTACW	1 cut(s)	154
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	2 cut(s)	651, 822
Tru9I	TTAA	2 cut(s)	651, 822
TscAI	CASTG	3 cut(s)	469, 582, 631
TseFI	GTSAC	2 cut(s)	211, 497
TseI	GCWGC	5 cut(s)	251, 260, 560, 563, 668
Tsp45I	GTSAC	2 cut(s)	211, 497
TspDTI	ATGAA	2 cut(s)	617, 621
TspGWI	ACGGA	1 cut(s)	325
TspRI	CASTG	3 cut(s)	469, 582, 631
VpaK11BI	GGWCC	1 cut(s)	123
XagI	CCTNNNNNAGG	1 cut(s)	822
XapI	RAATTY	2 cut(s)	388, 524
XceI	RCATGY	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.