FvH4_7g34070

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0003548
Physical Location & Seq
Reverse (-)
24077828 .. 24080035
2208 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g34070.t2

Sequence Viewer

Length: 963 bp
ATGGAGGTAAGGACAGTGAAAATTAACAATGTCTCCCTCAGCGCCACGGATCATGATCTAAGAGAATTCTTTTCCTTCTCCGGTGAAATTGAATATGTGGAACTTCATAGTTGTAACGAGACGTCTCAGGTTGCTTATGTTACCTTCAAGGATGCAACTGCAGCAGACACATCGATCCTCCTCTCGGGAGCGACTATTGTTGATCAACCTGTTACCATAGAAATGGCTGCAGAATACAAGCTGCCAGCTGCTGAGGCATCAACACTTCCAGCCGAAAAAGTTAATGTAAATGCTGGTGACGCCACACCTGCTGCCCGAAAGGCAGAGGATGTTGTGAGCAGCATGCTAGCACAAGGTTTTATTTTGGGAAAAGATGCTATTAGCAAGGCAAAAGCCTTTGATGAGAAGCACCAGATCTATTCCACTGCTACTGCCACAGTTGCTACATTGGACCAAAAGATTGGTTTTAGTGAGAAACTTAGTGCCGGCACAACCATGGTGAATGACAAACTGAGGCAAATGGACGAAAGGTTTCAGGTTTCTGAGAAGACAAAGTCTGCATATTCAGCTGCAGGGCAAACAGTCAGTACTGCAGGATCTGCACTCATGAGCAACCGTTACATATTAACTGGCGCAGCATGGGCTGTCGGTGCTTATAGTAGGGCTGCCCAGACAGCAAATGAAGTGAGCCAGAAGACAAAGGAAAAGGTTTTAGCTGAGAAAGATAAAAATGGCAATAAAGCGGGAGGCAGTCAAGCAGAGGACACTAAAGCGGAAGGCAGTGAAGGAGAAGGCAGTCAAGCGGAAGGCATCAAAGTAGAAGGCAGTCCAGCAGAAGGCATCAAAGTAGAAGGCAGTCAAGCGGAAGGCAATAATGCAGCAGCTGAAGGTTCTAAAACAGAAGGTAGTAAAGCAGCAGAAGGCATTCAAGTGGAAAGCAATAAAATAGAAGGCCGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

321

Amino Acids

33.55

Weight (kDa)

4.95

Isoelectric Point (pI)

27.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 316
AatII GACGTC 1 cut(s) 125
Acc36I ACCTGC 1 cut(s) 316
AciI CCGC 4 cut(s) 743, 773, 803, 863
AclWI GGATC 3 cut(s) 57, 169, 604
AcsI RAATTY 1 cut(s) 65
AcuI CTGAAG 1 cut(s) 906
AcyI GRCGYC 2 cut(s) 122, 300
AfaI GTAC 1 cut(s) 589
AfiI CCNNNNNNNGG 2 cut(s) 184, 836
AgsI TTSAA 3 cut(s) 92, 148, 929
AluBI AGCT 5 cut(s) 241, 248, 569, 716, 884
AluI AGCT 5 cut(s) 241, 248, 569, 716, 884
Alw26I GTCTC 3 cut(s) 37, 113, 129
AlwI GGATC 3 cut(s) 57, 169, 604
AlwNI CAGNNNCTG 3 cut(s) 251, 599, 884
Ama87I CYCGRG 1 cut(s) 184
AoxI GGCC 1 cut(s) 952
ApoI RAATTY 1 cut(s) 65
Asp700I GAANNNNTTC 2 cut(s) 531, 924
AspLEI GCGC 2 cut(s) 44, 635
AspS9I GGNCC 1 cut(s) 451
AsuHPI GGTGA 3 cut(s) 95, 308, 511
AsuNHI GCTAGC 1 cut(s) 346
AvaI CYCGRG 1 cut(s) 184
AvaII GGWCC 1 cut(s) 451
BbsI GAAGAC 2 cut(s) 554, 701
BbvCI CCTCAGC 2 cut(s) 38, 252
BceAI ACGGC 1 cut(s) 939
BcgI CGANNNNNNTGC 2 cut(s) 153, 187
BclI TGATCA 1 cut(s) 202
BcoDI GTCTC 3 cut(s) 37, 113, 129
BfaI CTAG 1 cut(s) 347
BfmI CTRYAG 4 cut(s) 159, 228, 570, 591
BfoI RGCGCY 1 cut(s) 45
BfuAI ACCTGC 1 cut(s) 316
BglI GCCNNNNNGGC 1 cut(s) 320
BglII AGATCT 1 cut(s) 414
BmcAI AGTACT 1 cut(s) 589
Bme18I GGWCC 1 cut(s) 451
BmeT110I CYCGRG 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 451
BmsI GCATC 5 cut(s) 142, 266, 364, 819, 849
BmtI GCTAGC 1 cut(s) 350
BpiI GAAGAC 2 cut(s) 554, 701
Bpu10I CCTNAGC 2 cut(s) 38, 252
Bsa29I ATCGAT 1 cut(s) 173
BsaBI GATNNNNATC 1 cut(s) 54
BsaHI GRCGYC 2 cut(s) 122, 300
BsaJI CCNNGG 2 cut(s) 45, 495
BsaWI WCCGGW 1 cut(s) 80
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 836
Bse118I RCCGGY 1 cut(s) 485
Bse1I ACTGG 1 cut(s) 634
Bse8I GATNNNNATC 1 cut(s) 54
BseCI ATCGAT 1 cut(s) 173
BseDI CCNNGG 2 cut(s) 45, 495
BseGI GGATG 2 cut(s) 157, 334
BseJI GATNNNNATC 1 cut(s) 54
BseLI CCNNNNNNNGG 2 cut(s) 184, 836
BseMII CTCAG 6 cut(s) 52, 140, 243, 503, 534, 708
BseNI ACTGG 1 cut(s) 634
BseRI GAGGAG 1 cut(s) 170
BsgI GTGCAG 1 cut(s) 585
BshFI GGCC 1 cut(s) 954
BshVI ATCGAT 1 cut(s) 173
BsiHKCI CYCGRG 1 cut(s) 184
BsiSI CCGG 2 cut(s) 81, 486
BslI CCNNNNNNNGG 2 cut(s) 184, 836
BsmAI GTCTC 3 cut(s) 37, 113, 129
BsmBI CGTCTC 2 cut(s) 113, 129
BsmI GAATGC 1 cut(s) 924
BsnI GGCC 1 cut(s) 954
BsoBI CYCGRG 1 cut(s) 184
Bsp143I GATC 6 cut(s) 49, 55, 174, 202, 414, 596
Bsp19I CCATGG 1 cut(s) 495
BspACI CCGC 4 cut(s) 743, 773, 803, 863
BspANI GGCC 1 cut(s) 954
BspCNI CTCAG 6 cut(s) 51, 139, 244, 504, 535, 709
BspDI ATCGAT 1 cut(s) 173
BspHI TCATGA 2 cut(s) 52, 606
BspMAI CTGCAG 4 cut(s) 163, 232, 574, 595
BspMI ACCTGC 1 cut(s) 316
BspOI GCTAGC 1 cut(s) 350
BspPI GGATC 3 cut(s) 57, 169, 604
BsrFI RCCGGY 1 cut(s) 485
BsrI ACTGG 1 cut(s) 634
BssAI RCCGGY 1 cut(s) 485
BssECI CCNNGG 2 cut(s) 45, 495
BssMI GATC 6 cut(s) 49, 55, 174, 202, 414, 596
BssNI GRCGYC 2 cut(s) 122, 300
BssT1I CCWWGG 1 cut(s) 495
Bst4CI ACNGT 4 cut(s) 16, 439, 583, 617
BstACI GRCGYC 2 cut(s) 122, 300
BstAPI GCANNNNNTGC 1 cut(s) 599
BstC8I GCNNGC 4 cut(s) 246, 344, 348, 487
BstDEI CTNAG 9 cut(s) 38, 59, 126, 252, 479, 512, 543, 717, 960
BstDSI CCRYGG 2 cut(s) 45, 495
BstF5I GGATG 2 cut(s) 157, 334
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 2 cut(s) 44, 635
BstKTI GATC 6 cut(s) 52, 58, 177, 205, 417, 599
BstMAI GTCTC 3 cut(s) 37, 113, 129
BstMBI GATC 6 cut(s) 49, 55, 174, 202, 414, 596
BstNSI RCATGY 1 cut(s) 346
BstSFI CTRYAG 4 cut(s) 159, 228, 570, 591
BstV2I GAAGAC 2 cut(s) 554, 701
BstX2I RGATCY 2 cut(s) 414, 596
BstXI CCANNNNNNTGG 2 cut(s) 223, 461
BstYI RGATCY 2 cut(s) 414, 596
Bsu15I ATCGAT 1 cut(s) 173
BsuRI GGCC 1 cut(s) 954
BsuTUI ATCGAT 1 cut(s) 173
BtgI CCRYGG 2 cut(s) 45, 495
BtsCI GGATG 2 cut(s) 157, 334
BtsI GCAGTG 2 cut(s) 423, 787
BtsIMutI CAGTG 3 cut(s) 21, 423, 787
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 4 cut(s) 246, 344, 348, 487
CaiI CAGNNNCTG 3 cut(s) 251, 599, 884
CciI TCATGA 2 cut(s) 52, 606
CfoI GCGC 2 cut(s) 44, 635
Cfr10I RCCGGY 1 cut(s) 485
Cfr13I GGNCC 1 cut(s) 451
ClaI ATCGAT 1 cut(s) 173
CseI GACGC 1 cut(s) 308
Csp6I GTAC 1 cut(s) 588
CviAII CATG 5 cut(s) 53, 343, 496, 607, 639
CviQI GTAC 1 cut(s) 588
DdeI CTNAG 9 cut(s) 38, 59, 126, 252, 479, 512, 543, 717, 960
DpnI GATC 6 cut(s) 51, 57, 176, 204, 416, 598
DpnII GATC 6 cut(s) 49, 55, 174, 202, 414, 596
Eco130I CCWWGG 1 cut(s) 495
Eco47I GGWCC 1 cut(s) 451
Eco57I CTGAAG 1 cut(s) 906
Eco88I CYCGRG 1 cut(s) 184
EcoRI GAATTC 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 495
ErhI CCWWGG 1 cut(s) 495
Esp3I CGTCTC 2 cut(s) 113, 129
FaeI CATG 5 cut(s) 56, 346, 499, 610, 642
FatI CATG 5 cut(s) 52, 342, 495, 606, 638
FauI CCCGC 1 cut(s) 736
FbaI TGATCA 1 cut(s) 202
FokI GGATG 2 cut(s) 164, 341
FspBI CTAG 1 cut(s) 347
GlaI GCGC 2 cut(s) 43, 634
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 1 cut(s) 954
HapII CCGG 2 cut(s) 81, 486
HgaI GACGC 1 cut(s) 308
HhaI GCGC 2 cut(s) 44, 635
Hin1I GRCGYC 2 cut(s) 122, 300
Hin1II CATG 5 cut(s) 56, 346, 499, 610, 642
Hin6I GCGC 2 cut(s) 42, 633
HinP1I GCGC 2 cut(s) 42, 633
HpaII CCGG 2 cut(s) 81, 486
HphI GGTGA 3 cut(s) 95, 308, 511
Hpy188I TCNGA 1 cut(s) 544
Hpy188III TCNNGA 3 cut(s) 53, 186, 607
HpyCH4III ACNGT 4 cut(s) 16, 439, 583, 617
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 8 cut(s) 155, 161, 230, 560, 572, 593, 602, 878
HpyF3I CTNAG 9 cut(s) 38, 59, 126, 252, 479, 512, 543, 717, 960
HpySE526I ACGT 1 cut(s) 122
Hsp92I GRCGYC 2 cut(s) 122, 300
Hsp92II CATG 5 cut(s) 56, 346, 499, 610, 642
HspAI GCGC 2 cut(s) 42, 633
KroI GCCGGC 1 cut(s) 485
KroNI GCCGGC 1 cut(s) 487
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 6 cut(s) 49, 55, 174, 202, 414, 596
LmnI GCTCC 1 cut(s) 188
LweI GCATC 5 cut(s) 142, 266, 364, 819, 849
MaeI CTAG 1 cut(s) 347
MaeII ACGT 1 cut(s) 122
MaeIII GTNAC 5 cut(s) 113, 139, 211, 296, 617
MalI GATC 6 cut(s) 51, 57, 176, 204, 416, 598
MboI GATC 6 cut(s) 49, 55, 174, 202, 414, 596
MboII GAAGA 2 cut(s) 559, 706
MflI RGATCY 2 cut(s) 414, 596
MluCI AATT 3 cut(s) 21, 65, 87
MnlI CCTC 8 cut(s) 47, 188, 191, 247, 319, 507, 740, 754
MroNI GCCGGC 1 cut(s) 485
MroXI GAANNNNTTC 2 cut(s) 531, 924
MseI TTAA 3 cut(s) 24, 282, 626
MslI CAYNNNNRTG 3 cut(s) 221, 494, 929
MspA1I CMGCKG 3 cut(s) 248, 569, 884
MspI CCGG 2 cut(s) 81, 486
Mva1269I GAATGC 1 cut(s) 924
NaeI GCCGGC 1 cut(s) 487
NcoI CCATGG 1 cut(s) 495
NdeII GATC 6 cut(s) 49, 55, 174, 202, 414, 596
NgoMIV GCCGGC 1 cut(s) 485
NheI GCTAGC 1 cut(s) 346
NlaIII CATG 5 cut(s) 56, 346, 499, 610, 642
NmuCI GTSAC 1 cut(s) 296
NspI RCATGY 1 cut(s) 346
PaeI GCATGC 1 cut(s) 346
PagI TCATGA 2 cut(s) 52, 606
PaqCI CACCTGC 1 cut(s) 316
PctI GAATGC 1 cut(s) 924
PdiI GCCGGC 1 cut(s) 487
PdmI GAANNNNTTC 2 cut(s) 531, 924
PflFI GACNNNGTC 1 cut(s) 553
PspPI GGNCC 1 cut(s) 451
PstI CTGCAG 4 cut(s) 163, 232, 574, 595
PstNI CAGNNNCTG 3 cut(s) 251, 599, 884
PsuI RGATCY 2 cut(s) 414, 596
PsyI GACNNNGTC 1 cut(s) 553
PvuII CAGCTG 3 cut(s) 248, 569, 884
RsaI GTAC 1 cut(s) 589
RsaNI GTAC 1 cut(s) 588
RseI CAYNNNNRTG 3 cut(s) 221, 494, 929
SaqAI TTAA 3 cut(s) 24, 282, 626
Sau3AI GATC 6 cut(s) 49, 55, 174, 202, 414, 596
Sau96I GGNCC 1 cut(s) 451
ScaI AGTACT 1 cut(s) 589
SfaNI GCATC 5 cut(s) 142, 266, 364, 819, 849
SfcI CTRYAG 4 cut(s) 159, 228, 570, 591
SinI GGWCC 1 cut(s) 451
SmiMI CAYNNNNRTG 3 cut(s) 221, 494, 929
SphI GCATGC 1 cut(s) 346
Sse9I AATT 3 cut(s) 21, 65, 87
SsiI CCGC 4 cut(s) 743, 773, 803, 863
SspMI CTAG 1 cut(s) 347
StyI CCWWGG 1 cut(s) 495
TaaI ACNGT 4 cut(s) 16, 439, 583, 617
TaiI ACGT 1 cut(s) 125
TaqI TCGA 1 cut(s) 173
TasI AATT 3 cut(s) 21, 65, 87
TatI WGTACW 1 cut(s) 587
Tru1I TTAA 3 cut(s) 24, 282, 626
Tru9I TTAA 3 cut(s) 24, 282, 626
TscAI CASTG 3 cut(s) 21, 430, 787
TseFI GTSAC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 2 cut(s) 95, 696
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 3 cut(s) 21, 430, 787
Tth111I GACNNNGTC 1 cut(s) 553
VpaK11BI GGWCC 1 cut(s) 451
XapI RAATTY 1 cut(s) 65
XceI RCATGY 1 cut(s) 346
XmnI GAANNNNTTC 2 cut(s) 531, 924
XspI CTAG 1 cut(s) 347
ZraI GACGTC 1 cut(s) 123
ZrmI AGTACT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.