RchiOBHm_Chr1g0384341

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003548
Physical Location & Seq
Reverse (-)
68252948 .. 68254457
1510 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60717

Sequence Viewer

Length: 1068 bp
ATGCTTTCCAGCTATGAATTTCACGTAAGGACAGTGAAAATTAACAACGTCTCCCTCAGAGCAACGGACCATGATCTAAGAGAATTCTTTTCCTTCTCCGGTGAAGTTGAATATGTGGAACTACATAGTTACAATGAGACGTCTCAGGTTGCATATGTTACCTTCAAGGATGCCAGTGGAGCAGACACATCGATCCTCCTTTCGGTGAATTCATTTGTCAATGCATTTGATTTTATTCTCACCCCTTTCCCTCATAGTTTGTCCTGCGATTGCAAATTGTTTATTGGAGCGACTATAGTTGATCGACCTGTTACCATAGATATGGCTGCAGATTACAAGCTGCCAGCTGCTGTGGCATCAACACTTCCAGCCGCAACAGTTAATGTAAATGCTGGTGGCCCCAAAGATGCTGTCCGAAAGGCAGAGGATGTTGTGAGCAGCATGCTAGCAAAAGGGTTCATTTTGGGAAAAGATGCTATTAGCAAGGCAAAAGCCTTTGATGAGAAACACCAGATCTATTCCACTGCTACAGCCACAGTTGCTACATTGGACCAAAAGATTGGTTTTAGTGAGAAACTTAGTGCCGGCACATCCATGGTAAACGATAAACTGAGGCAAATGGATGAAAAGTTTCAGGTCTCTGAGAAGACAAAGTCTGCATATTCAGCTGCAGGGCAAACGGTCAGTACTGCAGGATCTGCACTCATGAGCAACCGTTACATATTAACTGGGACAGCATGGGCTACCGGTGCTTATAATAGGGCTGCCCAGACAGCAAATGAAGTGAGCCAGAAGACAAAGGAAAAGGTTTTAGCTGAGGAAGATAAAAATGGCAATAAAGCGGAAGGCAGTCAAGGGGAAGGCAGTAAAGCAGAAGGAAGTCAAGCGGAAGGCACTAAAGCGGAAGGCAGTCAAGCGGATGACAGTCAAGCAGATGGCAATAAAGCGGAAGGCAGTCAAGCGGGAGGCAATCAAGCAGAAGGCAATAGAGCAGAAGGTAGTCAAGCTGAAGGCAATAAAGCGGAAGACAGTAAAGCTGAAAGCAATAAAGTGGAAGGCGGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

355

Amino Acids

37.51

Weight (kDa)

5.11

Isoelectric Point (pI)

25.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 756
AatII GACGTC 1 cut(s) 143
AciI CCGC 9 cut(s) 372, 842, 887, 902, 917, 947, 962, 1022, 1059
AclWI GGATC 2 cut(s) 187, 703
AcsI RAATTY 3 cut(s) 17, 83, 208
AcuI CTGAAG 1 cut(s) 1029
AcyI GRCGYC 1 cut(s) 140
AfaI GTAC 1 cut(s) 688
AfiI CCNNNNNNNGG 1 cut(s) 202
AgeI ACCGGT 1 cut(s) 746
AgsI TTSAA 2 cut(s) 110, 166
AluBI AGCT 7 cut(s) 12, 340, 347, 668, 815, 1007, 1037
AluI AGCT 7 cut(s) 12, 340, 347, 668, 815, 1007, 1037
Alw26I GTCTC 4 cut(s) 55, 131, 147, 643
AlwI GGATC 2 cut(s) 187, 703
AlwNI CAGNNNCTG 2 cut(s) 350, 698
AoxI GGCC 1 cut(s) 397
ApeKI GCWGC 6 cut(s) 326, 340, 347, 438, 668, 764
ApoI RAATTY 3 cut(s) 17, 83, 208
ArsI GACNNNNNNTTYG 2 cut(s) 396, 428
AsiGI ACCGGT 1 cut(s) 746
Asp700I GAANNNNTTC 1 cut(s) 630
AspS9I GGNCC 3 cut(s) 67, 398, 550
AsuHPI GGTGA 3 cut(s) 113, 217, 232
AsuNHI GCTAGC 1 cut(s) 445
AvaII GGWCC 2 cut(s) 67, 550
BbsI GAAGAC 3 cut(s) 653, 800, 1032
BbvCI CCTCAGC 1 cut(s) 816
BbvI GCAGC 6 cut(s) 313, 327, 334, 450, 655, 751
BccI CCATC 1 cut(s) 929
BcgI CGANNNNNNTGC 2 cut(s) 171, 205
BcoDI GTCTC 4 cut(s) 55, 131, 147, 643
BfaI CTAG 1 cut(s) 446
BfmI CTRYAG 5 cut(s) 294, 327, 528, 669, 690
BglII AGATCT 1 cut(s) 513
BisI GCNGC 7 cut(s) 327, 341, 348, 372, 439, 669, 765
BlsI GCNGC 7 cut(s) 328, 342, 349, 373, 440, 670, 766
BmcAI AGTACT 1 cut(s) 688
Bme18I GGWCC 2 cut(s) 67, 550
BmgT120I GGNCC 3 cut(s) 67, 398, 550
BmiI GGNNCC 1 cut(s) 400
BmrI ACTGGG 1 cut(s) 738
BmsI GCATC 4 cut(s) 160, 365, 397, 463
BmtI GCTAGC 1 cut(s) 449
BmuI ACTGGG 1 cut(s) 738
BpiI GAAGAC 3 cut(s) 653, 800, 1032
Bpu10I CCTNAGC 1 cut(s) 816
Bsa29I ATCGAT 1 cut(s) 191
BsaAI YACGTR 1 cut(s) 25
BsaHI GRCGYC 1 cut(s) 140
BsaI GGTCTC 1 cut(s) 643
BsaJI CCNNGG 1 cut(s) 594
BsaWI WCCGGW 2 cut(s) 98, 746
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse118I RCCGGY 2 cut(s) 584, 746
Bse1I ACTGG 2 cut(s) 174, 733
BseCI ATCGAT 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 594
BseGI GGATG 5 cut(s) 175, 433, 590, 628, 925
BseLI CCNNNNNNNGG 1 cut(s) 202
BseMII CTCAG 5 cut(s) 70, 158, 602, 633, 807
BseNI ACTGG 2 cut(s) 174, 733
BseXI GCAGC 6 cut(s) 313, 327, 334, 450, 655, 751
BsgI GTGCAG 1 cut(s) 684
BshFI GGCC 1 cut(s) 399
BshTI ACCGGT 1 cut(s) 746
BshVI ATCGAT 1 cut(s) 191
BsiSI CCGG 3 cut(s) 99, 585, 747
BslFI GGGAC 1 cut(s) 745
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 4 cut(s) 55, 131, 147, 643
BsmBI CGTCTC 3 cut(s) 55, 131, 147
BsmFI GGGAC 1 cut(s) 745
BsnI GGCC 1 cut(s) 399
Bso31I GGTCTC 1 cut(s) 643
Bsp143I GATC 5 cut(s) 73, 192, 301, 513, 695
Bsp19I CCATGG 1 cut(s) 594
BspACI CCGC 9 cut(s) 372, 842, 887, 902, 917, 947, 962, 1022, 1059
BspANI GGCC 1 cut(s) 399
BspCNI CTCAG 5 cut(s) 69, 157, 603, 634, 808
BspDI ATCGAT 1 cut(s) 191
BspHI TCATGA 1 cut(s) 705
BspLI GGNNCC 1 cut(s) 400
BspMAI CTGCAG 3 cut(s) 331, 673, 694
BspOI GCTAGC 1 cut(s) 449
BspPI GGATC 2 cut(s) 187, 703
BspTNI GGTCTC 1 cut(s) 643
BsrFI RCCGGY 2 cut(s) 584, 746
BsrI ACTGG 2 cut(s) 174, 733
BssAI RCCGGY 2 cut(s) 584, 746
BssECI CCNNGG 1 cut(s) 594
BssMI GATC 5 cut(s) 73, 192, 301, 513, 695
BssNI GRCGYC 1 cut(s) 140
BssT1I CCWWGG 1 cut(s) 594
Bst4CI ACNGT 7 cut(s) 34, 379, 538, 682, 716, 926, 1031
BstACI GRCGYC 1 cut(s) 140
BstAPI GCANNNNNTGC 1 cut(s) 698
BstBAI YACGTR 1 cut(s) 25
BstC8I GCNNGC 4 cut(s) 345, 443, 447, 586
BstDEI CTNAG 8 cut(s) 56, 77, 144, 578, 611, 642, 816, 1065
BstDSI CCRYGG 1 cut(s) 594
BstF5I GGATG 5 cut(s) 175, 433, 590, 628, 925
BstKTI GATC 5 cut(s) 76, 195, 304, 516, 698
BstMAI GTCTC 4 cut(s) 55, 131, 147, 643
BstMBI GATC 5 cut(s) 73, 192, 301, 513, 695
BstMWI GCNNNNNNNGC 7 cut(s) 179, 353, 539, 665, 698, 749, 773
BstNSI RCATGY 1 cut(s) 445
BstSFI CTRYAG 5 cut(s) 294, 327, 528, 669, 690
BstV1I GCAGC 6 cut(s) 313, 327, 334, 450, 655, 751
BstV2I GAAGAC 3 cut(s) 653, 800, 1032
BstX2I RGATCY 2 cut(s) 513, 695
BstXI CCANNNNNNTGG 2 cut(s) 322, 560
BstYI RGATCY 2 cut(s) 513, 695
Bsu15I ATCGAT 1 cut(s) 191
BsuRI GGCC 1 cut(s) 399
BsuTUI ATCGAT 1 cut(s) 191
BtgI CCRYGG 1 cut(s) 594
BtsCI GGATG 5 cut(s) 175, 433, 590, 628, 925
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 3 cut(s) 39, 181, 522
Cac8I GCNNGC 4 cut(s) 345, 443, 447, 586
CaiI CAGNNNCTG 2 cut(s) 350, 698
CciI TCATGA 1 cut(s) 705
Cfr10I RCCGGY 2 cut(s) 584, 746
Cfr13I GGNCC 3 cut(s) 67, 398, 550
ClaI ATCGAT 1 cut(s) 191
Csp6I GTAC 1 cut(s) 687
CspAI ACCGGT 1 cut(s) 746
CviAII CATG 5 cut(s) 71, 442, 595, 706, 738
CviQI GTAC 1 cut(s) 687
DdeI CTNAG 8 cut(s) 56, 77, 144, 578, 611, 642, 816, 1065
DpnI GATC 5 cut(s) 75, 194, 303, 515, 697
DpnII GATC 5 cut(s) 73, 192, 301, 513, 695
Eco130I CCWWGG 1 cut(s) 594
Eco31I GGTCTC 1 cut(s) 643
Eco47I GGWCC 2 cut(s) 67, 550
Eco57I CTGAAG 1 cut(s) 1029
EcoRI GAATTC 2 cut(s) 83, 208
EcoT14I CCWWGG 1 cut(s) 594
EcoT22I ATGCAT 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 594
Esp3I CGTCTC 3 cut(s) 55, 131, 147
FaeI CATG 5 cut(s) 74, 445, 598, 709, 741
FaqI GGGAC 1 cut(s) 745
FatI CATG 5 cut(s) 70, 441, 594, 705, 737
FauI CCCGC 1 cut(s) 955
FauNDI CATATG 1 cut(s) 154
Fnu4HI GCNGC 7 cut(s) 327, 341, 348, 372, 439, 669, 765
FokI GGATG 5 cut(s) 182, 440, 577, 635, 932
Fsp4HI GCNGC 7 cut(s) 327, 341, 348, 372, 439, 669, 765
FspBI CTAG 1 cut(s) 446
GluI GCNGC 7 cut(s) 327, 341, 348, 372, 439, 669, 765
HaeIII GGCC 1 cut(s) 399
HapII CCGG 3 cut(s) 99, 585, 747
Hin1I GRCGYC 1 cut(s) 140
Hin1II CATG 5 cut(s) 74, 445, 598, 709, 741
HpaII CCGG 3 cut(s) 99, 585, 747
HphI GGTGA 3 cut(s) 113, 217, 232
Hpy166II GTNNAC 1 cut(s) 601
Hpy188I TCNGA 3 cut(s) 59, 416, 643
Hpy188III TCNNGA 1 cut(s) 706
Hpy8I GTNNAC 1 cut(s) 601
HpyCH4III ACNGT 7 cut(s) 34, 379, 538, 682, 716, 926, 1031
HpyCH4IV ACGT 3 cut(s) 24, 48, 140
HpyCH4V TGCA 8 cut(s) 152, 224, 273, 329, 659, 671, 692, 701
HpyF10VI GCNNNNNNNGC 7 cut(s) 179, 353, 539, 665, 698, 749, 773
HpyF3I CTNAG 8 cut(s) 56, 77, 144, 578, 611, 642, 816, 1065
HpySE526I ACGT 3 cut(s) 24, 48, 140
Hsp92I GRCGYC 1 cut(s) 140
Hsp92II CATG 5 cut(s) 74, 445, 598, 709, 741
KroI GCCGGC 1 cut(s) 584
KroNI GCCGGC 1 cut(s) 586
Kzo9I GATC 5 cut(s) 73, 192, 301, 513, 695
LmnI GCTCC 2 cut(s) 179, 287
Lsp1109I GCAGC 6 cut(s) 313, 327, 334, 450, 655, 751
LweI GCATC 4 cut(s) 160, 365, 397, 463
MaeI CTAG 1 cut(s) 446
MaeII ACGT 3 cut(s) 24, 48, 140
MaeIII GTNAC 4 cut(s) 128, 157, 310, 716
MalI GATC 5 cut(s) 75, 194, 303, 515, 697
MboI GATC 5 cut(s) 73, 192, 301, 513, 695
MboII GAAGA 4 cut(s) 658, 805, 833, 1037
MflI RGATCY 2 cut(s) 513, 695
MluCI AATT 5 cut(s) 17, 39, 83, 208, 275
MnlI CCTC 7 cut(s) 65, 206, 261, 418, 606, 811, 959
Mph1103I ATGCAT 1 cut(s) 226
MroNI GCCGGC 1 cut(s) 584
MroXI GAANNNNTTC 1 cut(s) 630
MseI TTAA 3 cut(s) 42, 381, 725
MslI CAYNNNNRTG 2 cut(s) 320, 593
MspA1I CMGCKG 2 cut(s) 347, 668
MspI CCGG 3 cut(s) 99, 585, 747
MwoI GCNNNNNNNGC 7 cut(s) 179, 353, 539, 665, 698, 749, 773
NaeI GCCGGC 1 cut(s) 586
NcoI CCATGG 1 cut(s) 594
NdeI CATATG 1 cut(s) 154
NdeII GATC 5 cut(s) 73, 192, 301, 513, 695
NgoMIV GCCGGC 1 cut(s) 584
NheI GCTAGC 1 cut(s) 445
NlaIII CATG 5 cut(s) 74, 445, 598, 709, 741
NlaIV GGNNCC 1 cut(s) 400
NsiI ATGCAT 1 cut(s) 226
NspI RCATGY 1 cut(s) 445
PaeI GCATGC 1 cut(s) 445
PagI TCATGA 1 cut(s) 705
PdiI GCCGGC 1 cut(s) 586
PdmI GAANNNNTTC 1 cut(s) 630
PflFI GACNNNGTC 1 cut(s) 652
PinAI ACCGGT 1 cut(s) 746
PkrI GCNGC 7 cut(s) 328, 342, 349, 373, 440, 670, 766
Ppu21I YACGTR 1 cut(s) 25
PsiI TTATAA 1 cut(s) 756
PspN4I GGNNCC 1 cut(s) 400
PspPI GGNCC 3 cut(s) 67, 398, 550
PstI CTGCAG 3 cut(s) 331, 673, 694
PstNI CAGNNNCTG 2 cut(s) 350, 698
PsuI RGATCY 2 cut(s) 513, 695
PsyI GACNNNGTC 1 cut(s) 652
PvuII CAGCTG 2 cut(s) 347, 668
RsaI GTAC 1 cut(s) 688
RsaNI GTAC 1 cut(s) 687
RseI CAYNNNNRTG 2 cut(s) 320, 593
SaqAI TTAA 3 cut(s) 42, 381, 725
SatI GCNGC 7 cut(s) 327, 341, 348, 372, 439, 669, 765
Sau3AI GATC 5 cut(s) 73, 192, 301, 513, 695
Sau96I GGNCC 3 cut(s) 67, 398, 550
ScaI AGTACT 1 cut(s) 688
SfaNI GCATC 4 cut(s) 160, 365, 397, 463
SfcI CTRYAG 5 cut(s) 294, 327, 528, 669, 690
SinI GGWCC 2 cut(s) 67, 550
SmiMI CAYNNNNRTG 2 cut(s) 320, 593
SphI GCATGC 1 cut(s) 445
Sse9I AATT 5 cut(s) 17, 39, 83, 208, 275
SsiI CCGC 9 cut(s) 372, 842, 887, 902, 917, 947, 962, 1022, 1059
SspMI CTAG 1 cut(s) 446
StyI CCWWGG 1 cut(s) 594
TaaI ACNGT 7 cut(s) 34, 379, 538, 682, 716, 926, 1031
TaiI ACGT 3 cut(s) 27, 51, 143
TaqI TCGA 2 cut(s) 191, 304
TasI AATT 5 cut(s) 17, 39, 83, 208, 275
TatI WGTACW 1 cut(s) 686
TauI GCSGC 1 cut(s) 374
Tru1I TTAA 3 cut(s) 42, 381, 725
Tru9I TTAA 3 cut(s) 42, 381, 725
TscAI CASTG 3 cut(s) 39, 181, 529
TseI GCWGC 6 cut(s) 326, 340, 347, 438, 668, 764
TspDTI ATGAA 5 cut(s) 30, 201, 448, 639, 795
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 3 cut(s) 39, 181, 529
Tth111I GACNNNGTC 1 cut(s) 652
VpaK11BI GGWCC 2 cut(s) 67, 550
XapI RAATTY 3 cut(s) 17, 83, 208
XceI RCATGY 1 cut(s) 445
XmnI GAANNNNTTC 1 cut(s) 630
XspI CTAG 1 cut(s) 446
ZraI GACGTC 1 cut(s) 141
ZrmI AGTACT 1 cut(s) 688
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.