Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003548

Physical Location & Seq

Genomic Coordinates Forward (+)

9935836 .. 9937914

Gene Structure 2079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0126000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGTCATCAACAATGAGGGATGACATAAGATCATCTGGAGAGGCCTCTTGCAATGGGATTGTTCGCCGGATGGTGAGGCTCCCCAGAAGCCTGATTGGTAGATTTTCAAGAGCAATGGGTCATGGTAGAGGCCGTATAGGAATAGGAGGAAGAAGGACTCAAAATCTACCATCAAACTTCCAAATGCAGAATCCAGAAGAACCCCTAATTGTTCCTGAAGCATTTGCCTTTCTACATAGCTTTGAGCAGCATTATGGTACCATGCATCCATTCTTTTATGCTTGCCAGTTTATGGAGGCCTTAAAGATTGCGAAGGATGAGCACAAGTTCTTGTTCATGTATCTCCATTCACCAGAACACCCCTTCACACCCTCTTTCTGTAGGGAGACACTGTCTTCGGAGCTGGTGGTGCAGTTTCTTGATGCTAACTTCGTTTCTTGGGCAGCACTCGCTGATAGAGAGGAAGGTCTACAAATGGCTGCAACACTTAACCCTTCTTGCTTTCCGTTCTGCGCTATTATAGCTCCTGCTCCTAGTGATAGCATAGCAGTCTTGCAGAAGATGGAAGGGCCGATTTCTCCAACTGAGCTTATGGGGATTCTGCAGAGGACTGTGGAGGAACAAGGCTTGGCTTTCCACAGTCAAAGGGCCAAGCAGGCAGAACAGAATCAAAATATGATAGCAGACCGTCGTCTAAGAGACGAACAAGATGCAGCATATCTTGCAGCTCTACAAATGGACAAGGAAAAGGAGAAGCTGAAGAGTTCAGCTTTAGCAGAGAGAGTTCAGAAGCCAGTACAAGTCCCTAAGAAAGCAAATTCTGAGAAGCTTGAGAATCATTCTAACAAAAAAAATAATGGAAAAATGAAAGAGGCTTCTGCTACCAGAGATTCTCAATACAAGGAGGTTGCTAATTGGGGGAAAGATCCTCAGGCTGCACAGATACTGATAAGGTTTCCGAACGGCGAAAGAAGAGAGCAATGCTTCTTATGCACAGACAAAGTGCAGGCAATTTACAGATACATAGATTCATTAGGTCTACCTGGTATAGGAAACTACAGATTGATATCAAGCTTCCCAAGAAGAGTCTATGGTGTTGACCAGATGGGGATGACACTCAAAGATGCTGGTCTGCATCCAAGAGCAAGCCTATTTCTTGAACTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

389

Amino Acids

43.96

Weight (kDa)

8.86

Isoelectric Point (pI)

50.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAF1	PF21021	77 - 148	1.5e-11	Fas-associated factor 1
UBX	PF00789	309 - 387	1.3e-19	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17720 AT5G46870 AT5G46870
fragaria_vesca	FvH4_5g22870 FvH4_7g34070 FvH4_7g34070 FvH4_7g34070
malus_domestica	MD01G1236900.v1.1 MD06G1025100.v1.1 MD06G1025200.v1.1 MD07G1309500.v1.1
prunus_persica	Prupe.2G327200_v2.0.a1 Prupe.5G029900_v2.0.a1
pyrus_communis	pycom07g28150
rosa_chinensis	RchiOBHm_Chr1g0384341 RchiOBHm_Chr7g0211571
rosa_laevigata	RLG00000002998 RLG00000026047
rosa_multiflora	Rmu_co8225890.1_g000001 Rmu_sc0016737.1_g000005 Rmu_ssc0000317.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247740 Rroxscaffold_4G00276760
rosa_rugosa	Rorug01G0447000 Rorug07G0126000
rosa_samantha	Rh1AG472300 Rh1BG430100 Rh1CG443000 Rh1DG462700 Rh7AG258300 Rh7BG252500 Rh7CG275400 Rh7DG265800
rosa_wichuraiana	Rw1G040030 Rw7G022090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	257
AccB7I	CCANNNNNTGG	1 cut(s)	292
AccI	GTMKAC	2 cut(s)	469, 1039
AclWI	GGATC	1 cut(s)	920
AcsI	RAATTY	1 cut(s)	817
AcuI	CTGAAG	2 cut(s)	237, 779
AfaI	GTAC	2 cut(s)	259, 798
AfiI	CCNNNNNNNGG	2 cut(s)	292, 1049
AgsI	TTSAA	2 cut(s)	108, 1160
AjnI	CCWGG	1 cut(s)	1042
AluBI	AGCT	9 cut(s)	240, 403, 524, 589, 728, 757, 770, 829, 1074
AluI	AGCT	9 cut(s)	240, 403, 524, 589, 728, 757, 770, 829, 1074
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	2 cut(s)	380, 693
AlwI	GGATC	1 cut(s)	920
AlwNI	CAGNNNCTG	1 cut(s)	946
AoxI	GGCC	5 cut(s)	42, 130, 297, 569, 648
ApeKI	GCWGC	6 cut(s)	247, 443, 479, 713, 725, 935
ApoI	RAATTY	1 cut(s)	817
ArsI	GACNNNNNNTTYG	2 cut(s)	379, 411
Asp718I	GGTACC	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	515
AspS9I	GGNCC	2 cut(s)	569, 648
AsuHPI	GGTGA	2 cut(s)	85, 342
AxyI	CCTNAGG	1 cut(s)	930
BanI	GGYRCC	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	387
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	6 cut(s)	259, 455, 466, 725, 737, 922
BccI	CCATC	4 cut(s)	64, 178, 556, 1099
BceAI	ACGGC	2 cut(s)	117, 979
BcgI	CGANNNNNNTGC	2 cut(s)	692, 726
BciT130I	CCWGG	1 cut(s)	1044
BcoDI	GTCTC	2 cut(s)	380, 693
BfaI	CTAG	1 cut(s)	534
BfmI	CTRYAG	3 cut(s)	379, 602, 1057
BglI	GCCNNNNNGGC	1 cut(s)	656
BisI	GCNGC	6 cut(s)	248, 444, 480, 714, 726, 936
BlsI	GCNGC	6 cut(s)	249, 445, 481, 715, 727, 937
Bme1390I	CCNGG	1 cut(s)	1044
BmgT120I	GGNCC	2 cut(s)	569, 648
BmiI	GGNNCC	2 cut(s)	80, 259
BmrFI	CCNGG	1 cut(s)	1044
BmsI	GCATC	5 cut(s)	274, 412, 700, 1114, 1144
BoxI	GACNNNNGTC	1 cut(s)	690
BpiI	GAAGAC	1 cut(s)	387
BpmI	CTGGAG	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	851
BsaBI	GATNNNNATC	1 cut(s)	1066
BsaXI	ACNNNNNCTCC	2 cut(s)	377, 407
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 1049
Bse1I	ACTGG	2 cut(s)	286, 794
Bse21I	CCTNAGG	1 cut(s)	930
Bse3DI	GCAATG	3 cut(s)	58, 120, 986
Bse8I	GATNNNNATC	1 cut(s)	1066
BseBI	CCWGG	1 cut(s)	1044
BseGI	GGATG	6 cut(s)	25, 75, 265, 322, 1116, 1135
BseJI	GATNNNNATC	1 cut(s)	1066
BseLI	CCNNNNNNNGG	2 cut(s)	292, 1049
BseMI	GCAATG	3 cut(s)	58, 120, 986
BseMII	CTCAG	3 cut(s)	576, 813, 944
BseNI	ACTGG	2 cut(s)	286, 794
BseXI	GCAGC	6 cut(s)	259, 455, 466, 725, 737, 922
BsgI	GTGCAG	3 cut(s)	431, 921, 1025
BshFI	GGCC	5 cut(s)	44, 132, 299, 571, 650
BshNI	GGYRCC	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	788
BslI	CCNNNNNNNGG	2 cut(s)	292, 1049
BsmAI	GTCTC	2 cut(s)	380, 693
BsmBI	CGTCTC	1 cut(s)	693
BsmFI	GGGAC	1 cut(s)	788
BsnI	GGCC	5 cut(s)	44, 132, 299, 571, 650
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	2 cut(s)	29, 925
BspANI	GGCC	5 cut(s)	44, 132, 299, 571, 650
BspCNI	CTCAG	3 cut(s)	577, 814, 943
BspLI	GGNNCC	2 cut(s)	80, 259
BspMAI	CTGCAG	1 cut(s)	606
BspPI	GGATC	1 cut(s)	920
BspT107I	GGYRCC	1 cut(s)	257
BsrDI	GCAATG	3 cut(s)	58, 120, 986
BsrI	ACTGG	2 cut(s)	286, 794
BssMI	GATC	2 cut(s)	29, 925
Bst2UI	CCWGG	1 cut(s)	1044
Bst4CI	ACNGT	4 cut(s)	393, 613, 641, 689
Bst6I	CTCTTC	3 cut(s)	755, 967, 1078
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstC8I	GCNNGC	4 cut(s)	283, 657, 1008, 1147
BstDEI	CTNAG	5 cut(s)	585, 695, 807, 822, 930
BstENI	CCTNNNNNAGG	1 cut(s)	1047
BstF5I	GGATG	6 cut(s)	25, 75, 265, 322, 1116, 1135
BstHHI	GCGC	1 cut(s)	515
BstKTI	GATC	2 cut(s)	32, 928
BstMAI	GTCTC	2 cut(s)	380, 693
BstMBI	GATC	2 cut(s)	29, 925
BstMWI	GCNNNNNNNGC	6 cut(s)	409, 449, 521, 656, 722, 990
BstNI	CCWGG	1 cut(s)	1044
BstPAI	GACNNNNGTC	1 cut(s)	690
BstSCI	CCNGG	1 cut(s)	1042
BstSFI	CTRYAG	3 cut(s)	379, 602, 1057
BstV1I	GCAGC	6 cut(s)	259, 455, 466, 725, 737, 922
BstV2I	GAAGAC	1 cut(s)	387
BstX2I	RGATCY	1 cut(s)	925
BstYI	RGATCY	1 cut(s)	925
Bsu36I	CCTNAGG	1 cut(s)	930
BsuRI	GGCC	5 cut(s)	44, 132, 299, 571, 650
BtsCI	GGATG	6 cut(s)	25, 75, 265, 322, 1116, 1135
BtsIMutI	CAGTG	1 cut(s)	389
Cac8I	GCNNGC	4 cut(s)	283, 657, 1008, 1147
CaiI	CAGNNNCTG	1 cut(s)	946
CfoI	GCGC	1 cut(s)	515
Cfr13I	GGNCC	2 cut(s)	569, 648
CsiI	ACCWGGT	1 cut(s)	1042
Csp6I	GTAC	2 cut(s)	258, 797
CviAII	CATG	3 cut(s)	122, 262, 337
CviQI	GTAC	2 cut(s)	258, 797
DdeI	CTNAG	5 cut(s)	585, 695, 807, 822, 930
DpnI	GATC	2 cut(s)	31, 927
DpnII	GATC	2 cut(s)	29, 925
Eam1104I	CTCTTC	3 cut(s)	755, 967, 1078
EarI	CTCTTC	3 cut(s)	755, 967, 1078
Eco147I	AGGCCT	2 cut(s)	44, 299
Eco32I	GATATC	1 cut(s)	1068
Eco57I	CTGAAG	2 cut(s)	237, 779
Eco81I	CCTNAGG	1 cut(s)	930
EcoNI	CCTNNNNNAGG	1 cut(s)	1047
EcoRII	CCWGG	1 cut(s)	1042
EcoRV	GATATC	1 cut(s)	1068
EcoT22I	ATGCAT	1 cut(s)	267
Esp3I	CGTCTC	1 cut(s)	693
FaeI	CATG	3 cut(s)	125, 265, 340
FaqI	GGGAC	1 cut(s)	788
FatI	CATG	3 cut(s)	121, 261, 336
FblI	GTMKAC	2 cut(s)	469, 1039
Fnu4HI	GCNGC	6 cut(s)	248, 444, 480, 714, 726, 936
FokI	GGATG	6 cut(s)	32, 82, 252, 329, 1122, 1123
Fsp4HI	GCNGC	6 cut(s)	248, 444, 480, 714, 726, 936
FspBI	CTAG	1 cut(s)	534
GlaI	GCGC	1 cut(s)	514
GluI	GCNGC	6 cut(s)	248, 444, 480, 714, 726, 936
GsuI	CTGGAG	1 cut(s)	57
HaeIII	GGCC	5 cut(s)	44, 132, 299, 571, 650
HapII	CCGG	1 cut(s)	67
HhaI	GCGC	1 cut(s)	515
Hin1II	CATG	3 cut(s)	125, 265, 340
Hin6I	GCGC	1 cut(s)	513
HinP1I	GCGC	1 cut(s)	513
HincII	GTYRAC	1 cut(s)	1099
HindII	GTYRAC	1 cut(s)	1099
HindIII	AAGCTT	2 cut(s)	827, 1072
HinfI	GANTC	8 cut(s)	157, 190, 598, 667, 835, 890, 1028, 1086
HpaII	CCGG	1 cut(s)	67
HphI	GGTGA	2 cut(s)	85, 342
Hpy166II	GTNNAC	3 cut(s)	470, 1040, 1099
Hpy188I	TCNGA	4 cut(s)	400, 789, 823, 960
Hpy188III	TCNNGA	6 cut(s)	36, 108, 194, 215, 419, 1157
Hpy8I	GTNNAC	3 cut(s)	470, 1040, 1099
Hpy99I	CGWCG	1 cut(s)	693
HpyAV	CCTTC	6 cut(s)	147, 307, 373, 458, 504, 560
HpyCH4III	ACNGT	4 cut(s)	393, 613, 641, 689
HpyF10VI	GCNNNNNNNGC	6 cut(s)	409, 449, 521, 656, 722, 990
HpyF3I	CTNAG	5 cut(s)	585, 695, 807, 822, 930
Hsp92II	CATG	3 cut(s)	125, 265, 340
HspAI	GCGC	1 cut(s)	513
KpnI	GGTACC	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	29, 925
LmnI	GCTCC	4 cut(s)	84, 400, 529, 535
Lsp1109I	GCAGC	6 cut(s)	259, 455, 466, 725, 737, 922
LweI	GCATC	5 cut(s)	274, 412, 700, 1114, 1144
MabI	ACCWGGT	1 cut(s)	1042
MaeI	CTAG	1 cut(s)	534
MalI	GATC	2 cut(s)	31, 927
MboI	GATC	2 cut(s)	29, 925
MboII	GAAGA	7 cut(s)	162, 209, 387, 571, 772, 984, 1095
MflI	RGATCY	1 cut(s)	925
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	4 cut(s)	207, 817, 913, 1011
MlyI	GAGTC	2 cut(s)	151, 1095
MmeI	TCCRAC	1 cut(s)	605
Mph1103I	ATGCAT	1 cut(s)	267
MseI	TTAA	2 cut(s)	302, 489
MspI	CCGG	1 cut(s)	67
MspR9I	CCNGG	1 cut(s)	1044
MvaI	CCWGG	1 cut(s)	1044
MwoI	GCNNNNNNNGC	6 cut(s)	409, 449, 521, 656, 722, 990
NdeII	GATC	2 cut(s)	29, 925
NlaIII	CATG	3 cut(s)	125, 265, 340
NlaIV	GGNNCC	2 cut(s)	80, 259
NsiI	ATGCAT	1 cut(s)	267
PceI	AGGCCT	2 cut(s)	44, 299
PfeI	GAWTC	6 cut(s)	190, 598, 667, 835, 890, 1028
PflFI	GACNNNGTC	1 cut(s)	391
PflMI	CCANNNNNTGG	1 cut(s)	292
PkrI	GCNGC	6 cut(s)	249, 445, 481, 715, 727, 937
PleI	GAGTC	2 cut(s)	151, 1094
PpsI	GAGTC	2 cut(s)	151, 1094
PshAI	GACNNNNGTC	1 cut(s)	690
Psp6I	CCWGG	1 cut(s)	1042
PspGI	CCWGG	1 cut(s)	1042
PspN4I	GGNNCC	2 cut(s)	80, 259
PspPI	GGNCC	2 cut(s)	569, 648
PstI	CTGCAG	1 cut(s)	606
PstNI	CAGNNNCTG	1 cut(s)	946
PsuI	RGATCY	1 cut(s)	925
PsyI	GACNNNGTC	1 cut(s)	391
RsaI	GTAC	2 cut(s)	259, 798
RsaNI	GTAC	2 cut(s)	258, 797
SaqAI	TTAA	2 cut(s)	302, 489
SatI	GCNGC	6 cut(s)	248, 444, 480, 714, 726, 936
Sau3AI	GATC	2 cut(s)	29, 925
Sau96I	GGNCC	2 cut(s)	569, 648
SchI	GAGTC	2 cut(s)	151, 1095
ScrFI	CCNGG	1 cut(s)	1044
SduI	GDGCHC	1 cut(s)	324
SexAI	ACCWGGT	1 cut(s)	1042
SfaNI	GCATC	5 cut(s)	274, 412, 700, 1114, 1144
SfcI	CTRYAG	3 cut(s)	379, 602, 1057
SmlI	CTYRAG	1 cut(s)	830
SmoI	CTYRAG	1 cut(s)	830
Sse9I	AATT	4 cut(s)	207, 817, 913, 1011
SseBI	AGGCCT	2 cut(s)	44, 299
SspMI	CTAG	1 cut(s)	534
StuI	AGGCCT	2 cut(s)	44, 299
StyD4I	CCNGG	1 cut(s)	1042
TaaI	ACNGT	4 cut(s)	393, 613, 641, 689
TasI	AATT	4 cut(s)	207, 817, 913, 1011
TatI	WGTACW	1 cut(s)	796
TfiI	GAWTC	6 cut(s)	190, 598, 667, 835, 890, 1028
Tru1I	TTAA	2 cut(s)	302, 489
Tru9I	TTAA	2 cut(s)	302, 489
TscAI	CASTG	1 cut(s)	396
TseI	GCWGC	6 cut(s)	247, 443, 479, 713, 725, 935
TspDTI	ATGAA	3 cut(s)	325, 881, 1020
TspGWI	ACGGA	1 cut(s)	495
TspRI	CASTG	1 cut(s)	396
Tth111I	GACNNNGTC	1 cut(s)	391
Van91I	CCANNNNNTGG	1 cut(s)	292
XagI	CCTNNNNNAGG	1 cut(s)	1047
XapI	RAATTY	1 cut(s)	817
XmiI	GTMKAC	2 cut(s)	469, 1039
XspI	CTAG	1 cut(s)	534
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.