Rh1AG472300

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003548
Physical Location & Seq
Reverse (-)
68418888 .. 68421497
2610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG472300.1

Sequence Viewer

Length: 900 bp
ATGGAGGAGGTAAGGACAGTGAAAATTAACAATGTCTCCCTCGGCGCAACGGACCATGATCTAAGAGAATTCTTTTCCTTCTCCGGTGAAGTTGAATATGTGGAACTACATAGTTACAATGAGACGTCTCAGGTTGCATATGTTACCTTCAAGGATGCCAGTGGAGCAGACACATCGATCCTCCTTTCGGGAGCGACTATAGTTGATCGACCTGTTACCATAGATATGGCTGCAGATTACAAGCTGCCAACTGCTGTGGCATCAACACTTCCAGCTGCAACAGTTAATGTAAATGCTGGTGGCCCCAAAGATGCTGTCCGAAAGGCAGAGGATGTTGTGAGCAGCATGCTAGCAAAAGGGTTTATTTTGGGAAAAGATGCTATTAGCAAGGCAAAAGCCTTTGATGAGAAACACCAGATCTATTCCACTGCTACGGCCACAGTTGCTACATTGGACCAAAAGATTGGTTTTAGTGAGAAACTTAGTGCCGGCACAACCATGGTAAACGATAAACTGAGGCAAATGGATGAGAAGTTTCAGGTCTCTGAGAAGACAAAGTCTGCATATTCAGCTGCAGGGCAAACGGTCAGTACTGCAGGATCTGCACTCATGAGCAACCGTTACATATTAACTGGGACAGCATGGGCTACCGGTGCTTATAATAGGGCTGCCCAGACAGCAAATGAAGTGAGCCAGAAGACAAAGGAAAAGGTTTTAGCTGAGGAAGATAAAAATGGCAATAAAGCGGAAGGCAGTCAAGGGGAAGGCAGTCAAGCGGAAGGCACTAAAGCGGAATGCAAAGTGTTCACAAATCACAAGGCTGGCCACAATGAAGAAAGGTTCAGATATATTATGATCTCCTCCAGTCCTCCTAATAAATTAGCTTTACTGAAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

299

Amino Acids

32.07

Weight (kDa)

6.26

Isoelectric Point (pI)

24.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 9 - 71 3.5e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 660
AatII GACGTC 1 cut(s) 128
AciI CCGC 3 cut(s) 746, 776, 791
AclWI GGATC 2 cut(s) 172, 607
AcoI YGGCCR 2 cut(s) 435, 823
AcsI RAATTY 1 cut(s) 68
AcyI GRCGYC 1 cut(s) 125
AfaI GTAC 1 cut(s) 592
AfiI CCNNNNNNNGG 1 cut(s) 187
AgeI ACCGGT 1 cut(s) 650
AgsI TTSAA 2 cut(s) 95, 151
AluBI AGCT 5 cut(s) 244, 275, 572, 719, 884
AluI AGCT 5 cut(s) 244, 275, 572, 719, 884
Alw26I GTCTC 4 cut(s) 40, 116, 132, 547
AlwI GGATC 2 cut(s) 172, 607
AlwNI CAGNNNCTG 1 cut(s) 602
AoxI GGCC 3 cut(s) 301, 435, 823
ApeKI GCWGC 6 cut(s) 230, 244, 275, 342, 572, 668
ApoI RAATTY 1 cut(s) 68
ArsI GACNNNNNNTTYG 2 cut(s) 300, 332
AsiGI ACCGGT 1 cut(s) 650
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 3 cut(s) 52, 302, 454
AsuHPI GGTGA 1 cut(s) 98
AsuNHI GCTAGC 1 cut(s) 349
AvaII GGWCC 2 cut(s) 52, 454
BalI TGGCCA 1 cut(s) 825
BbsI GAAGAC 2 cut(s) 557, 704
BbvCI CCTCAGC 1 cut(s) 720
BbvI GCAGC 6 cut(s) 217, 231, 262, 354, 559, 655
BceAI ACGGC 1 cut(s) 450
BcgI CGANNNNNNTGC 2 cut(s) 156, 190
BcoDI GTCTC 4 cut(s) 40, 116, 132, 547
BfaI CTAG 1 cut(s) 350
BfmI CTRYAG 4 cut(s) 198, 231, 573, 594
BglII AGATCT 1 cut(s) 417
BisI GCNGC 6 cut(s) 231, 245, 276, 343, 573, 669
BlsI GCNGC 6 cut(s) 232, 246, 277, 344, 574, 670
BmcAI AGTACT 1 cut(s) 592
Bme18I GGWCC 2 cut(s) 52, 454
BmgT120I GGNCC 3 cut(s) 52, 302, 454
BmiI GGNNCC 1 cut(s) 304
BmrI ACTGGG 1 cut(s) 642
BmsI GCATC 4 cut(s) 145, 269, 301, 367
BmtI GCTAGC 1 cut(s) 353
BmuI ACTGGG 1 cut(s) 642
BpiI GAAGAC 2 cut(s) 557, 704
BpmI CTGGAG 1 cut(s) 847
Bpu10I CCTNAGC 1 cut(s) 720
Bsa29I ATCGAT 1 cut(s) 176
BsaHI GRCGYC 1 cut(s) 125
BsaI GGTCTC 1 cut(s) 547
BsaJI CCNNGG 2 cut(s) 40, 498
BsaWI WCCGGW 2 cut(s) 83, 650
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse118I RCCGGY 2 cut(s) 488, 650
Bse1I ACTGG 3 cut(s) 159, 637, 864
BseCI ATCGAT 1 cut(s) 176
BseDI CCNNGG 2 cut(s) 40, 498
BseGI GGATG 3 cut(s) 160, 337, 532
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMII CTCAG 4 cut(s) 143, 506, 537, 711
BseNI ACTGG 3 cut(s) 159, 637, 864
BseRI GAGGAG 2 cut(s) 20, 850
BseXI GCAGC 6 cut(s) 217, 231, 262, 354, 559, 655
BsgI GTGCAG 1 cut(s) 588
BshFI GGCC 3 cut(s) 303, 437, 825
BshTI ACCGGT 1 cut(s) 650
BshVI ATCGAT 1 cut(s) 176
BsiSI CCGG 3 cut(s) 84, 489, 651
BslFI GGGAC 1 cut(s) 649
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 4 cut(s) 40, 116, 132, 547
BsmBI CGTCTC 2 cut(s) 116, 132
BsmFI GGGAC 1 cut(s) 649
BsmI GAATGC 1 cut(s) 800
BsnI GGCC 3 cut(s) 303, 437, 825
Bso31I GGTCTC 1 cut(s) 547
Bsp143I GATC 6 cut(s) 58, 177, 205, 417, 599, 855
Bsp19I CCATGG 1 cut(s) 498
BspACI CCGC 3 cut(s) 746, 776, 791
BspANI GGCC 3 cut(s) 303, 437, 825
BspCNI CTCAG 4 cut(s) 142, 507, 538, 712
BspDI ATCGAT 1 cut(s) 176
BspHI TCATGA 1 cut(s) 609
BspLI GGNNCC 1 cut(s) 304
BspMAI CTGCAG 3 cut(s) 235, 577, 598
BspOI GCTAGC 1 cut(s) 353
BspPI GGATC 2 cut(s) 172, 607
BspTNI GGTCTC 1 cut(s) 547
BsrFI RCCGGY 2 cut(s) 488, 650
BsrI ACTGG 3 cut(s) 159, 637, 864
BssAI RCCGGY 2 cut(s) 488, 650
BssECI CCNNGG 2 cut(s) 40, 498
BssMI GATC 6 cut(s) 58, 177, 205, 417, 599, 855
BssNI GRCGYC 1 cut(s) 125
BssT1I CCWWGG 1 cut(s) 498
Bst4CI ACNGT 5 cut(s) 19, 283, 442, 586, 620
BstACI GRCGYC 1 cut(s) 125
BstAPI GCANNNNNTGC 1 cut(s) 602
BstC8I GCNNGC 4 cut(s) 347, 351, 490, 823
BstDEI CTNAG 6 cut(s) 62, 129, 482, 515, 546, 720
BstDSI CCRYGG 1 cut(s) 498
BstF5I GGATG 3 cut(s) 160, 337, 532
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 6 cut(s) 61, 180, 208, 420, 602, 858
BstMAI GTCTC 4 cut(s) 40, 116, 132, 547
BstMBI GATC 6 cut(s) 58, 177, 205, 417, 599, 855
BstMWI GCNNNNNNNGC 6 cut(s) 164, 443, 569, 602, 653, 677
BstNSI RCATGY 1 cut(s) 349
BstSFI CTRYAG 4 cut(s) 198, 231, 573, 594
BstV1I GCAGC 6 cut(s) 217, 231, 262, 354, 559, 655
BstV2I GAAGAC 2 cut(s) 557, 704
BstX2I RGATCY 2 cut(s) 417, 599
BstXI CCANNNNNNTGG 2 cut(s) 226, 464
BstYI RGATCY 2 cut(s) 417, 599
Bsu15I ATCGAT 1 cut(s) 176
BsuRI GGCC 3 cut(s) 303, 437, 825
BsuTUI ATCGAT 1 cut(s) 176
BtgI CCRYGG 1 cut(s) 498
BtsCI GGATG 3 cut(s) 160, 337, 532
BtsI GCAGTG 1 cut(s) 426
BtsIMutI CAGTG 3 cut(s) 24, 166, 426
Cac8I GCNNGC 4 cut(s) 347, 351, 490, 823
CaiI CAGNNNCTG 1 cut(s) 602
CciI TCATGA 1 cut(s) 609
CfoI GCGC 1 cut(s) 47
Cfr10I RCCGGY 2 cut(s) 488, 650
Cfr13I GGNCC 3 cut(s) 52, 302, 454
ClaI ATCGAT 1 cut(s) 176
Csp6I GTAC 1 cut(s) 591
CspAI ACCGGT 1 cut(s) 650
CspCI CAANNNNNGTGG 2 cut(s) 237, 272
CviAII CATG 5 cut(s) 56, 346, 499, 610, 642
CviQI GTAC 1 cut(s) 591
DdeI CTNAG 6 cut(s) 62, 129, 482, 515, 546, 720
DpnI GATC 6 cut(s) 60, 179, 207, 419, 601, 857
DpnII GATC 6 cut(s) 58, 177, 205, 417, 599, 855
EaeI YGGCCR 2 cut(s) 435, 823
Eco130I CCWWGG 1 cut(s) 498
Eco31I GGTCTC 1 cut(s) 547
Eco47I GGWCC 2 cut(s) 52, 454
EcoRI GAATTC 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 498
ErhI CCWWGG 1 cut(s) 498
Esp3I CGTCTC 2 cut(s) 116, 132
FaeI CATG 5 cut(s) 59, 349, 502, 613, 645
FaqI GGGAC 1 cut(s) 649
FatI CATG 5 cut(s) 55, 345, 498, 609, 641
FauNDI CATATG 1 cut(s) 139
Fnu4HI GCNGC 6 cut(s) 231, 245, 276, 343, 573, 669
FokI GGATG 3 cut(s) 167, 344, 539
Fsp4HI GCNGC 6 cut(s) 231, 245, 276, 343, 573, 669
FspBI CTAG 1 cut(s) 350
GlaI GCGC 1 cut(s) 46
GluI GCNGC 6 cut(s) 231, 245, 276, 343, 573, 669
GsuI CTGGAG 1 cut(s) 847
HaeIII GGCC 3 cut(s) 303, 437, 825
HapII CCGG 3 cut(s) 84, 489, 651
HhaI GCGC 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 5 cut(s) 59, 349, 502, 613, 645
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HpaII CCGG 3 cut(s) 84, 489, 651
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 2 cut(s) 505, 807
Hpy188I TCNGA 3 cut(s) 320, 547, 845
Hpy188III TCNNGA 2 cut(s) 189, 610
Hpy8I GTNNAC 2 cut(s) 505, 807
HpyAV CCTTC 5 cut(s) 88, 157, 743, 758, 773
HpyCH4III ACNGT 5 cut(s) 19, 283, 442, 586, 620
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 8 cut(s) 137, 233, 278, 563, 575, 596, 605, 798
HpyF10VI GCNNNNNNNGC 6 cut(s) 164, 443, 569, 602, 653, 677
HpyF3I CTNAG 6 cut(s) 62, 129, 482, 515, 546, 720
HpySE526I ACGT 1 cut(s) 125
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 5 cut(s) 59, 349, 502, 613, 645
HspAI GCGC 1 cut(s) 45
KroI GCCGGC 1 cut(s) 488
KroNI GCCGGC 1 cut(s) 490
Kzo9I GATC 6 cut(s) 58, 177, 205, 417, 599, 855
LmnI GCTCC 2 cut(s) 164, 191
Lsp1109I GCAGC 6 cut(s) 217, 231, 262, 354, 559, 655
LweI GCATC 4 cut(s) 145, 269, 301, 367
MaeI CTAG 1 cut(s) 350
MaeII ACGT 1 cut(s) 125
MaeIII GTNAC 4 cut(s) 113, 142, 214, 620
MalI GATC 6 cut(s) 60, 179, 207, 419, 601, 857
MboI GATC 6 cut(s) 58, 177, 205, 417, 599, 855
MboII GAAGA 4 cut(s) 562, 709, 737, 845
MflI RGATCY 2 cut(s) 417, 599
MlsI TGGCCA 1 cut(s) 825
MluCI AATT 3 cut(s) 24, 68, 878
MluNI TGGCCA 1 cut(s) 825
MnlI CCTC 7 cut(s) 50, 191, 322, 510, 715, 871, 879
Mox20I TGGCCA 1 cut(s) 825
MroNI GCCGGC 1 cut(s) 488
MscI TGGCCA 1 cut(s) 825
MseI TTAA 3 cut(s) 27, 285, 629
MslI CAYNNNNRTG 2 cut(s) 224, 497
Msp20I TGGCCA 1 cut(s) 825
MspA1I CMGCKG 2 cut(s) 275, 572
MspI CCGG 3 cut(s) 84, 489, 651
Mva1269I GAATGC 1 cut(s) 800
MwoI GCNNNNNNNGC 6 cut(s) 164, 443, 569, 602, 653, 677
NaeI GCCGGC 1 cut(s) 490
NcoI CCATGG 1 cut(s) 498
NdeI CATATG 1 cut(s) 139
NdeII GATC 6 cut(s) 58, 177, 205, 417, 599, 855
NgoMIV GCCGGC 1 cut(s) 488
NheI GCTAGC 1 cut(s) 349
NlaIII CATG 5 cut(s) 59, 349, 502, 613, 645
NlaIV GGNNCC 1 cut(s) 304
NmeAIII GCCGAG 1 cut(s) 21
NspI RCATGY 1 cut(s) 349
PaeI GCATGC 1 cut(s) 349
PagI TCATGA 1 cut(s) 609
PctI GAATGC 1 cut(s) 800
PdiI GCCGGC 1 cut(s) 490
PflFI GACNNNGTC 1 cut(s) 556
PinAI ACCGGT 1 cut(s) 650
PkrI GCNGC 6 cut(s) 232, 246, 277, 344, 574, 670
PsiI TTATAA 1 cut(s) 660
PspN4I GGNNCC 1 cut(s) 304
PspPI GGNCC 3 cut(s) 52, 302, 454
PstI CTGCAG 3 cut(s) 235, 577, 598
PstNI CAGNNNCTG 1 cut(s) 602
PsuI RGATCY 2 cut(s) 417, 599
PsyI GACNNNGTC 1 cut(s) 556
PvuII CAGCTG 2 cut(s) 275, 572
RsaI GTAC 1 cut(s) 592
RsaNI GTAC 1 cut(s) 591
RseI CAYNNNNRTG 2 cut(s) 224, 497
SaqAI TTAA 3 cut(s) 27, 285, 629
SatI GCNGC 6 cut(s) 231, 245, 276, 343, 573, 669
Sau3AI GATC 6 cut(s) 58, 177, 205, 417, 599, 855
Sau96I GGNCC 3 cut(s) 52, 302, 454
ScaI AGTACT 1 cut(s) 592
SfaNI GCATC 4 cut(s) 145, 269, 301, 367
SfcI CTRYAG 4 cut(s) 198, 231, 573, 594
SinI GGWCC 2 cut(s) 52, 454
SmiMI CAYNNNNRTG 2 cut(s) 224, 497
SphI GCATGC 1 cut(s) 349
Sse9I AATT 3 cut(s) 24, 68, 878
SsiI CCGC 3 cut(s) 746, 776, 791
SspMI CTAG 1 cut(s) 350
StyI CCWWGG 1 cut(s) 498
TaaI ACNGT 5 cut(s) 19, 283, 442, 586, 620
TaiI ACGT 1 cut(s) 128
TaqI TCGA 2 cut(s) 176, 208
TasI AATT 3 cut(s) 24, 68, 878
TatI WGTACW 1 cut(s) 590
Tru1I TTAA 3 cut(s) 27, 285, 629
Tru9I TTAA 3 cut(s) 27, 285, 629
TscAI CASTG 3 cut(s) 24, 166, 433
TseI GCWGC 6 cut(s) 230, 244, 275, 342, 572, 668
TspDTI ATGAA 2 cut(s) 699, 846
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 3 cut(s) 24, 166, 433
Tth111I GACNNNGTC 1 cut(s) 556
VpaK11BI GGWCC 2 cut(s) 52, 454
XapI RAATTY 1 cut(s) 68
XceI RCATGY 1 cut(s) 349
XspI CTAG 1 cut(s) 350
ZraI GACGTC 1 cut(s) 126
ZrmI AGTACT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.