FvH4_5g22870

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0003548
Physical Location & Seq
Forward (+)
14164091 .. 14168627
4537 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g22870.t1

Sequence Viewer

Length: 822 bp
ATGTCGGTAACCACCATCAAGGTCAGCAACCTTTCCTTGGGTGCAAGTGAAAGAGACATAAAGGAGTTCTTTTCCTTTTCTGGCGATATCGCCTATGTGGAAATGCATAGTGACACTGAGCGGTCCCAAATTGCATATGTTACCTTCAAGGATGTACAAGGAGCAGAGACTGCCGTGCTTCTTTCGGGAGCTACAATAGTCGACATGTCTGTAACCATAACTCTGGCTCCAGAATACGAGCTGCCACCTGCTGCAATAGCACCTTCTGTAACTGATAAGGCCCCTGCTGGTGCTGAATCTGCATTACGGAAGGCAGAGGATGTTGTTACCGGCATGCTTGCTAAGGGCTTTATCTTGGGCAAAGATGCAGTCAACAAGGCAAAGGGCTTTGATGAGAAACACCAGTTGACCTCGACAGCTTCAGAAAAGGTTGCTTCTTTTGACAAAAAGATTGGGCTCACTGAGAAAATAAGTGTTGGTACTTCTGTGGTGAGTGAAAAAGTTCGCGAAGTGGATCAGAAATTCCAGGTCTCGGAAAAAACCAAGTCAGCTTTTGCTGCTGCTGAGCAGACAGTCAGCAATGCTGGATCTGCCATTATGAAGAACCGATATGTGTTTACTTCTGCTGCATGGGTTTCGGGTGCTTTCAACAAGGTTGCAAAGGCAGCTGGAGAGGTTGGTCAGAAGACAAAAGAAAAGGTTGGAATGGTGGAAGAGGAGAAGAACAGACAAATCGAGGATGACTATGCTCAAGTTCTCTCTGAGTCTCCAAAAGCATCTGGACCAAGTGGGCAAGAACCTGTTAAAGGTTTGATCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

274

Amino Acids

29.03

Weight (kDa)

5.48

Isoelectric Point (pI)

33.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 7 - 66 4.5e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 256
Acc36I ACCTGC 1 cut(s) 256
AccBSI CCGCTC 1 cut(s) 121
AccI GTMKAC 1 cut(s) 201
AccII CGCG 1 cut(s) 507
AciI CCGC 1 cut(s) 121
AclWI GGATC 3 cut(s) 522, 595, 808
AcsI RAATTY 1 cut(s) 521
AcuI CTGAAG 1 cut(s) 405
AfaI GTAC 2 cut(s) 156, 481
AfiI CCNNNNNNNGG 3 cut(s) 37, 532, 806
AflIII ACRYGT 1 cut(s) 204
AgsI TTSAA 2 cut(s) 148, 649
AjnI CCWGG 1 cut(s) 525
AluBI AGCT 5 cut(s) 191, 241, 419, 551, 668
AluI AGCT 5 cut(s) 191, 241, 419, 551, 668
Alw26I GTCTC 4 cut(s) 48, 161, 535, 771
AlwI GGATC 3 cut(s) 522, 595, 808
AlwNI CAGNNNCTG 1 cut(s) 170
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 6 cut(s) 241, 251, 557, 560, 626, 665
ApoI RAATTY 1 cut(s) 521
ArsI GACNNNNNNTTYG 2 cut(s) 354, 386
Asp700I GAANNNNTTC 1 cut(s) 501
AspS9I GGNCC 3 cut(s) 123, 280, 782
AsuHPI GGTGA 1 cut(s) 502
AvaII GGWCC 2 cut(s) 123, 782
BaeI ACNNNNGTAYC 2 cut(s) 471, 504
BanII GRGCYC 1 cut(s) 459
BbsI GAAGAC 1 cut(s) 692
BbvI GCAGC 6 cut(s) 228, 238, 544, 547, 613, 677
BccI CCATC 1 cut(s) 23
BceAI ACGGC 1 cut(s) 158
BcgI CGANNNNNNTGC 2 cut(s) 618, 652
BciT130I CCWGG 1 cut(s) 527
BcoDI GTCTC 4 cut(s) 48, 161, 535, 771
BfuAI ACCTGC 1 cut(s) 256
BisI GCNGC 6 cut(s) 242, 252, 558, 561, 627, 666
BlpI GCTNAGC 1 cut(s) 564
BlsI GCNGC 6 cut(s) 243, 253, 559, 562, 628, 667
Bme1390I CCNGG 1 cut(s) 527
Bme18I GGWCC 2 cut(s) 123, 782
BmgT120I GGNCC 3 cut(s) 123, 280, 782
BmiI GGNNCC 3 cut(s) 125, 228, 282
BmrFI CCNGG 1 cut(s) 527
BmsI GCATC 2 cut(s) 355, 785
BpiI GAAGAC 1 cut(s) 692
BpmI CTGGAG 2 cut(s) 213, 690
Bpu10I CCTNAGC 1 cut(s) 342
Bpu1102I GCTNAGC 1 cut(s) 564
BpuEI CTTGAG 1 cut(s) 735
BsaI GGTCTC 1 cut(s) 535
BsaJI CCNNGG 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 211, 241
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 532, 806
Bse118I RCCGGY 1 cut(s) 329
Bse1I ACTGG 1 cut(s) 403
Bse3DI GCAATG 1 cut(s) 586
BseBI CCWGG 1 cut(s) 527
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 3 cut(s) 157, 325, 745
BseLI CCNNNNNNNGG 3 cut(s) 37, 532, 806
BseMI GCAATG 1 cut(s) 586
BseMII CTCAG 4 cut(s) 108, 453, 555, 753
BseNI ACTGG 1 cut(s) 403
BseRI GAGGAG 1 cut(s) 731
BseXI GCAGC 6 cut(s) 228, 238, 544, 547, 613, 677
Bsh1236I CGCG 1 cut(s) 507
BshFI GGCC 1 cut(s) 281
BsiSI CCGG 1 cut(s) 330
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 3 cut(s) 37, 532, 806
BsmAI GTCTC 4 cut(s) 48, 161, 535, 771
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 1 cut(s) 281
Bso31I GGTCTC 1 cut(s) 535
Bsp1286I GDGCHC 1 cut(s) 459
Bsp1407I TGTACA 1 cut(s) 154
Bsp143I GATC 3 cut(s) 514, 587, 813
Bsp1720I GCTNAGC 1 cut(s) 564
Bsp68I TCGCGA 1 cut(s) 507
BspACI CCGC 1 cut(s) 121
BspANI GGCC 1 cut(s) 281
BspCNI CTCAG 4 cut(s) 109, 454, 556, 754
BspFNI CGCG 1 cut(s) 507
BspLI GGNNCC 3 cut(s) 125, 228, 282
BspMI ACCTGC 1 cut(s) 256
BspPI GGATC 3 cut(s) 522, 595, 808
BspTNI GGTCTC 1 cut(s) 535
BsrBI CCGCTC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 586
BsrFI RCCGGY 1 cut(s) 329
BsrGI TGTACA 1 cut(s) 154
BsrI ACTGG 1 cut(s) 403
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 3 cut(s) 514, 587, 813
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 527
Bst4CI ACNGT 1 cut(s) 574
Bst6I CTCTTC 1 cut(s) 708
BstAPI GCANNNNNTGC 1 cut(s) 170
BstAUI TGTACA 1 cut(s) 154
BstC8I GCNNGC 2 cut(s) 335, 339
BstDEI CTNAG 5 cut(s) 117, 342, 462, 564, 762
BstEII GGTNACC 1 cut(s) 7
BstENI CCTNNNNNAGG 1 cut(s) 804
BstF5I GGATG 3 cut(s) 157, 325, 745
BstFNI CGCG 1 cut(s) 507
BstKTI GATC 3 cut(s) 517, 590, 816
BstMAI GTCTC 4 cut(s) 48, 161, 535, 771
BstMBI GATC 3 cut(s) 514, 587, 813
BstMWI GCNNNNNNNGC 6 cut(s) 170, 257, 299, 557, 590, 665
BstNI CCWGG 1 cut(s) 527
BstNSI RCATGY 2 cut(s) 208, 337
BstPI GGTNACC 1 cut(s) 7
BstSCI CCNGG 1 cut(s) 525
BstUI CGCG 1 cut(s) 507
BstV1I GCAGC 6 cut(s) 228, 238, 544, 547, 613, 677
BstV2I GAAGAC 1 cut(s) 692
BstX2I RGATCY 1 cut(s) 587
BstXI CCANNNNNNTGG 1 cut(s) 223
BstYI RGATCY 1 cut(s) 587
BsuRI GGCC 1 cut(s) 281
BtsCI GGATG 3 cut(s) 157, 325, 745
BtsIMutI CAGTG 2 cut(s) 114, 459
BtuMI TCGCGA 1 cut(s) 507
BveI ACCTGC 1 cut(s) 256
Cac8I GCNNGC 2 cut(s) 335, 339
CaiI CAGNNNCTG 1 cut(s) 170
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 3 cut(s) 123, 280, 782
Csp6I GTAC 2 cut(s) 155, 480
CviAII CATG 3 cut(s) 205, 334, 630
CviQI GTAC 2 cut(s) 155, 480
DdeI CTNAG 5 cut(s) 117, 342, 462, 564, 762
DpnI GATC 3 cut(s) 516, 589, 815
DpnII GATC 3 cut(s) 514, 587, 813
Eam1104I CTCTTC 1 cut(s) 708
EarI CTCTTC 1 cut(s) 708
Eco130I CCWWGG 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 459
Eco31I GGTCTC 1 cut(s) 535
Eco32I GATATC 1 cut(s) 88
Eco47I GGWCC 2 cut(s) 123, 782
Eco57I CTGAAG 1 cut(s) 405
Eco91I GGTNACC 1 cut(s) 7
EcoNI CCTNNNNNAGG 1 cut(s) 804
EcoO109I RGGNCCY 1 cut(s) 280
EcoO65I GGTNACC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 525
EcoRV GATATC 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 36
EcoT22I ATGCAT 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 459
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 3 cut(s) 208, 337, 633
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FaqI GGGAC 1 cut(s) 109
FatI CATG 3 cut(s) 204, 333, 629
FauNDI CATATG 1 cut(s) 136
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 6 cut(s) 242, 252, 558, 561, 627, 666
FokI GGATG 3 cut(s) 164, 332, 752
FriOI GRGCYC 1 cut(s) 459
Fsp4HI GCNGC 6 cut(s) 242, 252, 558, 561, 627, 666
GluI GCNGC 6 cut(s) 242, 252, 558, 561, 627, 666
GsuI CTGGAG 2 cut(s) 213, 690
HaeIII GGCC 1 cut(s) 281
HapII CCGG 1 cut(s) 330
Hin1II CATG 3 cut(s) 208, 337, 633
HincII GTYRAC 3 cut(s) 202, 373, 408
HindII GTYRAC 3 cut(s) 202, 373, 408
HinfI GANTC 2 cut(s) 296, 764
HpaII CCGG 1 cut(s) 330
HphI GGTGA 1 cut(s) 502
Hpy166II GTNNAC 4 cut(s) 202, 373, 408, 618
Hpy188I TCNGA 5 cut(s) 424, 519, 535, 684, 763
Hpy188III TCNNGA 4 cut(s) 186, 230, 506, 780
Hpy8I GTNNAC 4 cut(s) 202, 373, 408, 618
HpyAV CCTTC 3 cut(s) 154, 273, 304
HpyCH4III ACNGT 1 cut(s) 574
HpyCH4V TGCA 8 cut(s) 44, 106, 134, 254, 302, 368, 629, 659
HpyF10VI GCNNNNNNNGC 6 cut(s) 170, 257, 299, 557, 590, 665
HpyF3I CTNAG 5 cut(s) 117, 342, 462, 564, 762
Hsp92II CATG 3 cut(s) 208, 337, 633
Kzo9I GATC 3 cut(s) 514, 587, 813
LmnI GCTCC 3 cut(s) 161, 188, 232
Lsp1109I GCAGC 6 cut(s) 228, 238, 544, 547, 613, 677
LweI GCATC 2 cut(s) 355, 785
MaeIII GTNAC 6 cut(s) 7, 110, 139, 211, 268, 325
MalI GATC 3 cut(s) 516, 589, 815
MbiI CCGCTC 1 cut(s) 121
MboI GATC 3 cut(s) 514, 587, 813
MboII GAAGA 4 cut(s) 613, 697, 725, 733
MflI RGATCY 1 cut(s) 587
MhlI GDGCHC 1 cut(s) 459
MluCI AATT 2 cut(s) 129, 521
MlyI GAGTC 1 cut(s) 773
MmeI TCCRAC 1 cut(s) 682
MnlI CCTC 5 cut(s) 310, 421, 667, 709, 730
Mph1103I ATGCAT 1 cut(s) 108
MroXI GAANNNNTTC 1 cut(s) 501
MseI TTAA 2 cut(s) 804, 820
MspA1I CMGCKG 1 cut(s) 668
MspI CCGG 1 cut(s) 330
MspR9I CCNGG 1 cut(s) 527
MvaI CCWGG 1 cut(s) 527
MvnI CGCG 1 cut(s) 507
MwoI GCNNNNNNNGC 6 cut(s) 170, 257, 299, 557, 590, 665
NdeI CATATG 1 cut(s) 136
NdeII GATC 3 cut(s) 514, 587, 813
NlaIII CATG 3 cut(s) 208, 337, 633
NlaIV GGNNCC 3 cut(s) 125, 228, 282
NmuCI GTSAC 1 cut(s) 110
NruI TCGCGA 1 cut(s) 507
NsiI ATGCAT 1 cut(s) 108
NspI RCATGY 2 cut(s) 208, 337
PaeI GCATGC 1 cut(s) 337
PaqCI CACCTGC 1 cut(s) 256
PciI ACATGT 1 cut(s) 204
PdmI GAANNNNTTC 1 cut(s) 501
PfeI GAWTC 1 cut(s) 296
PkrI GCNGC 6 cut(s) 243, 253, 559, 562, 628, 667
PleI GAGTC 1 cut(s) 772
PpsI GAGTC 1 cut(s) 772
PscI ACATGT 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 525
PspEI GGTNACC 1 cut(s) 7
PspGI CCWGG 1 cut(s) 525
PspN4I GGNNCC 3 cut(s) 125, 228, 282
PspPI GGNCC 3 cut(s) 123, 280, 782
PstNI CAGNNNCTG 1 cut(s) 170
PsuI RGATCY 1 cut(s) 587
PvuII CAGCTG 1 cut(s) 668
RruI TCGCGA 1 cut(s) 507
RsaI GTAC 2 cut(s) 156, 481
RsaNI GTAC 2 cut(s) 155, 480
SalI GTCGAC 1 cut(s) 200
SaqAI TTAA 2 cut(s) 804, 820
SatI GCNGC 6 cut(s) 242, 252, 558, 561, 627, 666
Sau3AI GATC 3 cut(s) 514, 587, 813
Sau96I GGNCC 3 cut(s) 123, 280, 782
SchI GAGTC 1 cut(s) 773
ScrFI CCNGG 1 cut(s) 527
SduI GDGCHC 1 cut(s) 459
SfaNI GCATC 2 cut(s) 355, 785
SinI GGWCC 2 cut(s) 123, 782
SmlI CTYRAG 1 cut(s) 750
SmoI CTYRAG 1 cut(s) 750
SphI GCATGC 1 cut(s) 337
Sse9I AATT 2 cut(s) 129, 521
SsiI CCGC 1 cut(s) 121
StyD4I CCNGG 1 cut(s) 525
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 574
TaqI TCGA 3 cut(s) 201, 413, 735
TasI AATT 2 cut(s) 129, 521
TatI WGTACW 1 cut(s) 154
TfiI GAWTC 1 cut(s) 296
Tru1I TTAA 2 cut(s) 804, 820
Tru9I TTAA 2 cut(s) 804, 820
TscAI CASTG 2 cut(s) 121, 466
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 6 cut(s) 241, 251, 557, 560, 626, 665
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 614
TspGWI ACGGA 1 cut(s) 322
TspRI CASTG 2 cut(s) 121, 466
VpaK11BI GGWCC 2 cut(s) 123, 782
XagI CCTNNNNNAGG 1 cut(s) 804
XapI RAATTY 1 cut(s) 521
XceI RCATGY 2 cut(s) 208, 337
XmiI GTMKAC 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 501
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.