Rw7G022090

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0003548
Physical Location & Seq
Forward (+)
25906248 .. 25910052
3805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G022090.1

Sequence Viewer

Length: 822 bp
ATGTCGGTAAACACCATCAAGGTCAGCAACCTTTCCTTGGGTGCAAGTGAGAGAGACATCAAGGAGTTCTTTTCCTTTTCTGGCGATATCGCATATGTGGAAATGCAGAGTGACACTGAGCGGTCCCAAATTGCATATGTTACCTTCAAGGATCTACAAGGAGCAGAGACTGCTGTGCTTCTTTCGGGAGCTACAATAGTCGATATGTCTGTAACCATAACTCTCGCTCCAGAATACAAGTTGCCACCTTCTGCAATAGCACCTTCTGTAACTGATAAAGCCCCTGGTGGTGCTGAATCTGCATTTCGGAAGGCAGAGGATGTTGTTAGCGGCATGCTTGCTAAGGGATTTATCTTGGGGAAAGATGCAGTCAACAAGGCAAAGGGCTTTGATGAGAAACACCAGTTGACCTCAACAGCTTCAGAAAAGGTTGCTTCTTTTGACAAAAAGATAGGGCTCACTGAGAAAATAAGTGTTGGTACTTCTGTGGTGAGTGAAAAAGTTCGTGAAGTGGATCAGAAATTCCAGGTCTCTGAGAAGACCAAGTCAGCTTTTGCTGCTGCCGAGCAGACAGTTAGCAATGCTGGATCTGCCATTATGAAGAACCGATATGTGTTTACTTCGGCTGCATGGGTTTCGGGTGCTTTCAACAAGGTTGCAAAGGCAGCTGGTGATGTTGGTCAGAAGACAAAAGAAAAAGTTGAAATGGTGGAAGAGGAAAAGAACAGAAAAATTGAGGATGACTATGCTCAAGTTCTGTCCGAGTCTCCAAAAGCATCTGGACCAAGTGGGCATGAACCTGTTAAAGGTTTGATCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

273

Amino Acids

29.13

Weight (kDa)

5.9

Isoelectric Point (pI)

32.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 7 - 66 2e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 121
AciI CCGC 2 cut(s) 121, 330
AclWI GGATC 4 cut(s) 159, 522, 595, 808
AcsI RAATTY 1 cut(s) 521
AcuI CTGAAG 1 cut(s) 405
AfaI GTAC 1 cut(s) 481
AfiI CCNNNNNNNGG 2 cut(s) 37, 806
AgsI TTSAA 3 cut(s) 148, 649, 704
AjnI CCWGG 2 cut(s) 283, 525
AluBI AGCT 4 cut(s) 191, 419, 551, 668
AluI AGCT 4 cut(s) 191, 419, 551, 668
Alw26I GTCTC 4 cut(s) 48, 161, 535, 771
AlwI GGATC 4 cut(s) 159, 522, 595, 808
AlwNI CAGNNNCTG 1 cut(s) 170
ApeKI GCWGC 4 cut(s) 557, 560, 626, 665
ApoI RAATTY 1 cut(s) 521
Asp700I GAANNNNTTC 1 cut(s) 501
AspS9I GGNCC 2 cut(s) 123, 782
AsuHPI GGTGA 2 cut(s) 502, 683
AvaII GGWCC 2 cut(s) 123, 782
BaeI ACNNNNGTAYC 2 cut(s) 471, 504
BanII GRGCYC 1 cut(s) 459
BbsI GAAGAC 2 cut(s) 545, 692
BbvI GCAGC 4 cut(s) 544, 547, 613, 677
BccI CCATC 1 cut(s) 23
BcgI CGANNNNNNTGC 2 cut(s) 618, 652
BciT130I CCWGG 2 cut(s) 285, 527
BcoDI GTCTC 4 cut(s) 48, 161, 535, 771
BisI GCNGC 5 cut(s) 331, 558, 561, 627, 666
BlsI GCNGC 5 cut(s) 332, 559, 562, 628, 667
Bme1390I CCNGG 2 cut(s) 285, 527
Bme18I GGWCC 2 cut(s) 123, 782
BmgT120I GGNCC 2 cut(s) 123, 782
BmiI GGNNCC 1 cut(s) 125
BmrFI CCNGG 2 cut(s) 285, 527
BmsI GCATC 2 cut(s) 355, 785
BpiI GAAGAC 2 cut(s) 545, 692
BpmI CTGGAG 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 342
BpuEI CTTGAG 1 cut(s) 735
BsaI GGTCTC 1 cut(s) 535
BsaJI CCNNGG 2 cut(s) 36, 283
BsaXI ACNNNNNCTCC 2 cut(s) 211, 241
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 806
Bse1I ACTGG 1 cut(s) 403
Bse3DI GCAATG 1 cut(s) 586
BseBI CCWGG 2 cut(s) 285, 527
BseDI CCNNGG 2 cut(s) 36, 283
BseGI GGATG 2 cut(s) 325, 745
BseLI CCNNNNNNNGG 2 cut(s) 37, 806
BseMI GCAATG 1 cut(s) 586
BseMII CTCAG 3 cut(s) 108, 453, 525
BseNI ACTGG 1 cut(s) 403
BseXI GCAGC 4 cut(s) 544, 547, 613, 677
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 2 cut(s) 37, 806
BsmAI GTCTC 4 cut(s) 48, 161, 535, 771
BsmFI GGGAC 1 cut(s) 109
Bso31I GGTCTC 1 cut(s) 535
Bsp1286I GDGCHC 1 cut(s) 459
Bsp143I GATC 4 cut(s) 151, 514, 587, 813
BspACI CCGC 2 cut(s) 121, 330
BspCNI CTCAG 3 cut(s) 109, 454, 526
BspLI GGNNCC 1 cut(s) 125
BspPI GGATC 4 cut(s) 159, 522, 595, 808
BspTNI GGTCTC 1 cut(s) 535
BsrBI CCGCTC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 586
BsrI ACTGG 1 cut(s) 403
BssECI CCNNGG 2 cut(s) 36, 283
BssMI GATC 4 cut(s) 151, 514, 587, 813
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 2 cut(s) 285, 527
Bst4CI ACNGT 1 cut(s) 574
Bst6I CTCTTC 1 cut(s) 708
BstAPI GCANNNNNTGC 1 cut(s) 170
BstC8I GCNNGC 2 cut(s) 335, 339
BstDEI CTNAG 4 cut(s) 117, 342, 462, 534
BstENI CCTNNNNNAGG 1 cut(s) 804
BstF5I GGATG 2 cut(s) 325, 745
BstKTI GATC 4 cut(s) 154, 517, 590, 816
BstMAI GTCTC 4 cut(s) 48, 161, 535, 771
BstMBI GATC 4 cut(s) 151, 514, 587, 813
BstMWI GCNNNNNNNGC 5 cut(s) 170, 299, 557, 590, 665
BstNI CCWGG 2 cut(s) 285, 527
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 2 cut(s) 283, 525
BstV1I GCAGC 4 cut(s) 544, 547, 613, 677
BstV2I GAAGAC 2 cut(s) 545, 692
BstX2I RGATCY 2 cut(s) 151, 587
BstYI RGATCY 2 cut(s) 151, 587
BtsCI GGATG 2 cut(s) 325, 745
BtsIMutI CAGTG 2 cut(s) 114, 459
Cac8I GCNNGC 2 cut(s) 335, 339
CaiI CAGNNNCTG 1 cut(s) 170
Cfr13I GGNCC 2 cut(s) 123, 782
Csp6I GTAC 1 cut(s) 480
CviAII CATG 3 cut(s) 334, 630, 794
CviJI RGCY 8 cut(s) 191, 281, 387, 419, 457, 551, 626, 668
CviKI_1 RGCY 8 cut(s) 191, 281, 387, 419, 457, 551, 626, 668
CviQI GTAC 1 cut(s) 480
DdeI CTNAG 4 cut(s) 117, 342, 462, 534
DpnI GATC 4 cut(s) 153, 516, 589, 815
DpnII GATC 4 cut(s) 151, 514, 587, 813
Eam1104I CTCTTC 1 cut(s) 708
EarI CTCTTC 1 cut(s) 708
Eco130I CCWWGG 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 459
Eco31I GGTCTC 1 cut(s) 535
Eco32I GATATC 1 cut(s) 88
Eco47I GGWCC 2 cut(s) 123, 782
Eco57I CTGAAG 1 cut(s) 405
EcoNI CCTNNNNNAGG 1 cut(s) 804
EcoRII CCWGG 2 cut(s) 283, 525
EcoRV GATATC 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 459
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 3 cut(s) 337, 633, 797
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FaqI GGGAC 1 cut(s) 109
FatI CATG 3 cut(s) 333, 629, 793
FauNDI CATATG 2 cut(s) 94, 136
Fnu4HI GCNGC 5 cut(s) 331, 558, 561, 627, 666
FokI GGATG 2 cut(s) 332, 752
FriOI GRGCYC 1 cut(s) 459
Fsp4HI GCNGC 5 cut(s) 331, 558, 561, 627, 666
GluI GCNGC 5 cut(s) 331, 558, 561, 627, 666
GsuI CTGGAG 1 cut(s) 213
Hin1II CATG 3 cut(s) 337, 633, 797
HincII GTYRAC 2 cut(s) 373, 408
HindII GTYRAC 2 cut(s) 373, 408
HinfI GANTC 2 cut(s) 296, 764
HphI GGTGA 2 cut(s) 502, 683
Hpy166II GTNNAC 4 cut(s) 10, 373, 408, 618
Hpy188I TCNGA 6 cut(s) 309, 424, 519, 535, 684, 763
Hpy188III TCNNGA 4 cut(s) 186, 230, 506, 780
Hpy8I GTNNAC 4 cut(s) 10, 373, 408, 618
HpyAV CCTTC 4 cut(s) 154, 258, 273, 304
HpyCH4III ACNGT 1 cut(s) 574
HpyCH4V TGCA 8 cut(s) 44, 106, 134, 254, 302, 368, 629, 659
HpyF10VI GCNNNNNNNGC 5 cut(s) 170, 299, 557, 590, 665
HpyF3I CTNAG 4 cut(s) 117, 342, 462, 534
Hsp92II CATG 3 cut(s) 337, 633, 797
Kzo9I GATC 4 cut(s) 151, 514, 587, 813
LmnI GCTCC 3 cut(s) 161, 188, 232
Lsp1109I GCAGC 4 cut(s) 544, 547, 613, 677
LweI GCATC 2 cut(s) 355, 785
MaeIII GTNAC 4 cut(s) 110, 139, 211, 268
MalI GATC 4 cut(s) 153, 516, 589, 815
MbiI CCGCTC 1 cut(s) 121
MboI GATC 4 cut(s) 151, 514, 587, 813
MboII GAAGA 4 cut(s) 550, 613, 697, 725
MflI RGATCY 2 cut(s) 151, 587
MhlI GDGCHC 1 cut(s) 459
MluCI AATT 3 cut(s) 129, 521, 732
MlyI GAGTC 1 cut(s) 773
MnlI CCTC 4 cut(s) 310, 421, 709, 730
MroXI GAANNNNTTC 1 cut(s) 501
MseI TTAA 1 cut(s) 804
MspA1I CMGCKG 1 cut(s) 668
MspR9I CCNGG 2 cut(s) 285, 527
MvaI CCWGG 2 cut(s) 285, 527
MwoI GCNNNNNNNGC 5 cut(s) 170, 299, 557, 590, 665
NdeI CATATG 2 cut(s) 94, 136
NdeII GATC 4 cut(s) 151, 514, 587, 813
NlaIII CATG 3 cut(s) 337, 633, 797
NlaIV GGNNCC 1 cut(s) 125
NmeAIII GCCGAG 1 cut(s) 589
NmuCI GTSAC 1 cut(s) 110
NspI RCATGY 1 cut(s) 337
PaeI GCATGC 1 cut(s) 337
PdmI GAANNNNTTC 1 cut(s) 501
PfeI GAWTC 1 cut(s) 296
PflFI GACNNNGTC 1 cut(s) 544
PkrI GCNGC 5 cut(s) 332, 559, 562, 628, 667
PleI GAGTC 1 cut(s) 772
PpsI GAGTC 1 cut(s) 772
Psp6I CCWGG 2 cut(s) 283, 525
PspGI CCWGG 2 cut(s) 283, 525
PspN4I GGNNCC 1 cut(s) 125
PspPI GGNCC 2 cut(s) 123, 782
PstNI CAGNNNCTG 1 cut(s) 170
PsuI RGATCY 2 cut(s) 151, 587
PsyI GACNNNGTC 1 cut(s) 544
PvuII CAGCTG 1 cut(s) 668
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
SaqAI TTAA 1 cut(s) 804
SatI GCNGC 5 cut(s) 331, 558, 561, 627, 666
Sau3AI GATC 4 cut(s) 151, 514, 587, 813
Sau96I GGNCC 2 cut(s) 123, 782
SchI GAGTC 1 cut(s) 773
ScrFI CCNGG 2 cut(s) 285, 527
SduI GDGCHC 1 cut(s) 459
SfaNI GCATC 2 cut(s) 355, 785
SinI GGWCC 2 cut(s) 123, 782
SmlI CTYRAG 1 cut(s) 750
SmoI CTYRAG 1 cut(s) 750
SphI GCATGC 1 cut(s) 337
Sse9I AATT 3 cut(s) 129, 521, 732
SsiI CCGC 2 cut(s) 121, 330
StyD4I CCNGG 2 cut(s) 283, 525
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 574
TaqI TCGA 1 cut(s) 201
TasI AATT 3 cut(s) 129, 521, 732
TauI GCSGC 1 cut(s) 333
TfiI GAWTC 1 cut(s) 296
Tru1I TTAA 1 cut(s) 804
Tru9I TTAA 1 cut(s) 804
TscAI CASTG 2 cut(s) 121, 466
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 4 cut(s) 557, 560, 626, 665
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 614, 810
TspRI CASTG 2 cut(s) 121, 466
Tth111I GACNNNGTC 1 cut(s) 544
VpaK11BI GGWCC 2 cut(s) 123, 782
XagI CCTNNNNNAGG 1 cut(s) 804
XapI RAATTY 1 cut(s) 521
XceI RCATGY 1 cut(s) 337
XmnI GAANNNNTTC 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.