AT5G46870

nucleic acid binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003548
Physical Location & Seq
Forward (+)
19015233 .. 19017247
2015 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G46870.2

Sequence Viewer

Length: 888 bp
ATGTCGATGGTAACTGTCAAAGTTAGCAACGTTTCTCTTGAAGCAACAGAAAGAGATCTCAAGGAGTTCTTCTCTTTTTCCGGCGATATTGCTTACCTCGAGACTCAAAGCGAGAATGATGGTTCTAAATTAGCATATGTCACATTCAAGGATTTACAAGGAGCTGAAACCGCAGTTCTCCTCACCGGATCGACGATTGTTGATTCATCGGTCACAGTTACAATGTCACCAGATTACCAACTACCTCCTGATGCTTTAGCTTCCATTGAATCATTGAAAGAGAGCAATAAATCATCATCTCCTACGCGAGAAGATGTATCGGTATTTAGAAAAGCTGAAGATGTTGTAAGTGGTATGATTTCAAAAGGGTTTGTTTTAGGTAAAGACGCTATAGCTAAAGCGAAGAGTCTTGATGAGAAGCATCAGTTGACATCAACAGCTTCAGCTAGAGTTACATCTTTCGACAAAAGAATCGGATTCACGGAGAAAATCAACACCGGGACTACAGTTGTGAGCGAAAAAGTTAAAGAAGTTGATCAGAAGTTTCAAGTCACAGAGAAAACAAAATCAGCAATAGCTGCTGCTGAGCAGACAGTGAGCAATGCTGGTTCTGCTATAATGAAAAACCGGTATGTTTTAACCGGTGCCACGTGGGTTACGGGTGCGTTTAACAGAGTGAGTAAAGCTGCTGAAGAAGTTGGACAAAAGGCGAAAGAGAAAGTTGGTTTGGCTGAGGAAGAAGAAGAAGAGAAGAAGAAAGTGGTTGATGAAGTTGCTATAGTTCATCTGACTGAATCACCAAAGGCTTTAGACCAATCAGAACAAGATTCAAAACTCCCTGAATCAAAATCACAGCCACACAAGGAGCTTAACGCAAGTGTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

295

Amino Acids

31.9

Weight (kDa)

5.21

Isoelectric Point (pI)

37.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 7 - 66 2.1e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 644
AccII CGCG 1 cut(s) 307
AciI CCGC 1 cut(s) 171
AclI AACGTT 1 cut(s) 30
AclWI GGATC 1 cut(s) 196
AcuI CTGAAG 3 cut(s) 357, 426, 711
AcvI CACGTG 1 cut(s) 651
AgeI ACCGGT 2 cut(s) 627, 641
AgsI TTSAA 7 cut(s) 41, 148, 269, 277, 363, 548, 831
AjuI GAANNNNNNNTTGG 2 cut(s) 710, 742
AluBI AGCT 9 cut(s) 164, 260, 335, 395, 440, 446, 578, 686, 868
AluI AGCT 9 cut(s) 164, 260, 335, 395, 440, 446, 578, 686, 868
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 196
Ama87I CYCGRG 1 cut(s) 98
ApeKI GCWGC 3 cut(s) 578, 581, 686
AsiGI ACCGGT 2 cut(s) 627, 641
AsuC2I CCSGG 1 cut(s) 499
AsuHPI GGTGA 3 cut(s) 175, 219, 789
AvaI CYCGRG 1 cut(s) 98
BanI GGYRCC 1 cut(s) 644
BbrPI CACGTG 1 cut(s) 651
BbvCI CCTCAGC 1 cut(s) 732
BbvI GCAGC 3 cut(s) 565, 568, 673
BccI CCATC 1 cut(s) 113
BclI TGATCA 1 cut(s) 535
BcnI CCSGG 1 cut(s) 499
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 1 cut(s) 447
BfmI CTRYAG 3 cut(s) 390, 504, 777
BglII AGATCT 1 cut(s) 55
BisI GCNGC 3 cut(s) 579, 582, 687
BlpI GCTNAGC 1 cut(s) 585
BlsI GCNGC 3 cut(s) 580, 583, 688
Bme1390I CCNGG 1 cut(s) 499
BmeT110I CYCGRG 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 646
BmrFI CCNGG 1 cut(s) 499
BmsI GCATC 2 cut(s) 241, 430
BplI GAGNNNNNCTC 2 cut(s) 56, 88
Bpu10I CCTNAGC 1 cut(s) 732
Bpu1102I GCTNAGC 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 499
BsaAI YACGTR 1 cut(s) 651
BsaWI WCCGGW 3 cut(s) 185, 627, 641
Bse118I RCCGGY 2 cut(s) 627, 641
Bse3DI GCAATG 1 cut(s) 607
BseMI GCAATG 1 cut(s) 607
BseMII CTCAG 2 cut(s) 576, 723
BseRI GAGGAG 1 cut(s) 170
BseXI GCAGC 3 cut(s) 565, 568, 673
Bsh1236I CGCG 1 cut(s) 307
BshNI GGYRCC 1 cut(s) 644
BshTI ACCGGT 2 cut(s) 627, 641
BsiHKCI CYCGRG 1 cut(s) 98
BsiSI CCGG 5 cut(s) 81, 186, 498, 628, 642
BslFI GGGAC 1 cut(s) 514
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 514
BsoBI CYCGRG 1 cut(s) 98
Bsp143I GATC 3 cut(s) 55, 188, 535
Bsp1720I GCTNAGC 1 cut(s) 585
BspACI CCGC 1 cut(s) 171
BspCNI CTCAG 2 cut(s) 577, 724
BspFNI CGCG 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 646
BspPI GGATC 1 cut(s) 196
BspT107I GGYRCC 1 cut(s) 644
BsrDI GCAATG 1 cut(s) 607
BsrFI RCCGGY 2 cut(s) 627, 641
BssAI RCCGGY 2 cut(s) 627, 641
BssMI GATC 3 cut(s) 55, 188, 535
Bst4CI ACNGT 4 cut(s) 16, 217, 508, 595
Bst6I CTCTTC 2 cut(s) 398, 741
BstAPI GCANNNNNTGC 1 cut(s) 578
BstBAI YACGTR 1 cut(s) 651
BstDEI CTNAG 2 cut(s) 585, 732
BstFNI CGCG 1 cut(s) 307
BstKTI GATC 3 cut(s) 58, 191, 538
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 3 cut(s) 55, 188, 535
BstMWI GCNNNNNNNGC 3 cut(s) 170, 578, 611
BstSCI CCNGG 1 cut(s) 497
BstSFI CTRYAG 3 cut(s) 390, 504, 777
BstUI CGCG 1 cut(s) 307
BstV1I GCAGC 3 cut(s) 565, 568, 673
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 600
Cfr10I RCCGGY 2 cut(s) 627, 641
CseI GACGC 1 cut(s) 395
CspAI ACCGGT 2 cut(s) 627, 641
DdeI CTNAG 2 cut(s) 585, 732
DpnI GATC 3 cut(s) 57, 190, 537
DpnII GATC 3 cut(s) 55, 188, 535
Eam1104I CTCTTC 2 cut(s) 398, 741
EarI CTCTTC 2 cut(s) 398, 741
Eco57I CTGAAG 3 cut(s) 357, 426, 711
Eco72I CACGTG 1 cut(s) 651
Eco88I CYCGRG 1 cut(s) 98
FaiI YATR 7 cut(s) 136, 138, 356, 392, 617, 633, 779
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FaqI GGGAC 1 cut(s) 514
FauNDI CATATG 1 cut(s) 136
FbaI TGATCA 1 cut(s) 535
Fnu4HI GCNGC 3 cut(s) 579, 582, 687
Fsp4HI GCNGC 3 cut(s) 579, 582, 687
FspBI CTAG 1 cut(s) 447
GluI GCNGC 3 cut(s) 579, 582, 687
HapII CCGG 5 cut(s) 81, 186, 498, 628, 642
HgaI GACGC 1 cut(s) 395
HincII GTYRAC 1 cut(s) 429
HindII GTYRAC 1 cut(s) 429
HinfI GANTC 9 cut(s) 103, 203, 269, 406, 471, 477, 794, 827, 842
HpaII CCGG 5 cut(s) 81, 186, 498, 628, 642
HphI GGTGA 3 cut(s) 175, 219, 789
Hpy166II GTNNAC 1 cut(s) 429
Hpy188I TCNGA 4 cut(s) 476, 540, 789, 820
Hpy188III TCNNGA 4 cut(s) 38, 100, 248, 410
Hpy8I GTNNAC 1 cut(s) 429
Hpy99I CGWCG 1 cut(s) 196
HpyCH4III ACNGT 4 cut(s) 16, 217, 508, 595
HpyCH4IV ACGT 2 cut(s) 30, 650
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 578, 611
HpyF3I CTNAG 2 cut(s) 585, 732
HpySE526I ACGT 2 cut(s) 30, 650
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 3 cut(s) 55, 188, 535
LmnI GCTCC 2 cut(s) 161, 865
LpnPI CCDG 9 cut(s) 94, 199, 243, 261, 511, 591, 641, 655, 852
Lsp1109I GCAGC 3 cut(s) 565, 568, 673
LweI GCATC 2 cut(s) 241, 430
MaeI CTAG 1 cut(s) 447
MaeII ACGT 2 cut(s) 30, 650
MaeIII GTNAC 8 cut(s) 10, 139, 211, 217, 225, 451, 550, 655
MalI GATC 3 cut(s) 57, 190, 537
MboI GATC 3 cut(s) 55, 188, 535
MflI RGATCY 1 cut(s) 55
MluCI AATT 1 cut(s) 128
MlyI GAGTC 2 cut(s) 97, 415
MmeI TCCRAC 1 cut(s) 679
MnlI CCTC 4 cut(s) 107, 191, 255, 727
MseI TTAA 4 cut(s) 525, 638, 669, 870
MspI CCGG 5 cut(s) 81, 186, 498, 628, 642
MspR9I CCNGG 1 cut(s) 499
MvnI CGCG 1 cut(s) 307
MwoI GCNNNNNNNGC 3 cut(s) 170, 578, 611
NciI CCSGG 1 cut(s) 499
NdeI CATATG 1 cut(s) 136
NdeII GATC 3 cut(s) 55, 188, 535
NlaIV GGNNCC 1 cut(s) 646
NmuCI GTSAC 4 cut(s) 139, 211, 225, 550
PaeR7I CTCGAG 1 cut(s) 98
PfeI GAWTC 7 cut(s) 203, 269, 471, 477, 794, 827, 842
PinAI ACCGGT 2 cut(s) 627, 641
PkrI GCNGC 3 cut(s) 580, 583, 688
PleI GAGTC 2 cut(s) 97, 414
PmaCI CACGTG 1 cut(s) 651
PmlI CACGTG 1 cut(s) 651
PpsI GAGTC 2 cut(s) 97, 414
Ppu21I YACGTR 1 cut(s) 651
Psp1406I AACGTT 1 cut(s) 30
PspCI CACGTG 1 cut(s) 651
PspN4I GGNNCC 1 cut(s) 646
PsuI RGATCY 1 cut(s) 55
SaqAI TTAA 4 cut(s) 525, 638, 669, 870
SatI GCNGC 3 cut(s) 579, 582, 687
Sau3AI GATC 3 cut(s) 55, 188, 535
SchI GAGTC 2 cut(s) 97, 415
ScrFI CCNGG 1 cut(s) 499
SfaNI GCATC 2 cut(s) 241, 430
SfcI CTRYAG 3 cut(s) 390, 504, 777
Sfr274I CTCGAG 1 cut(s) 98
SlaI CTCGAG 1 cut(s) 98
SmlI CTYRAG 2 cut(s) 59, 98
SmoI CTYRAG 2 cut(s) 59, 98
Sse9I AATT 1 cut(s) 128
SsiI CCGC 1 cut(s) 171
SspMI CTAG 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 497
TaaI ACNGT 4 cut(s) 16, 217, 508, 595
TaiI ACGT 2 cut(s) 33, 653
TaqI TCGA 4 cut(s) 5, 99, 191, 462
TaqII GACCGA 1 cut(s) 199
TasI AATT 1 cut(s) 128
TfiI GAWTC 7 cut(s) 203, 269, 471, 477, 794, 827, 842
Tru1I TTAA 4 cut(s) 525, 638, 669, 870
Tru9I TTAA 4 cut(s) 525, 638, 669, 870
TscAI CASTG 1 cut(s) 600
TseFI GTSAC 4 cut(s) 139, 211, 225, 550
TseI GCWGC 3 cut(s) 578, 581, 686
Tsp45I GTSAC 4 cut(s) 139, 211, 225, 550
TspDTI ATGAA 4 cut(s) 195, 635, 773, 783
TspGWI ACGGA 1 cut(s) 497
TspRI CASTG 1 cut(s) 600
XhoI CTCGAG 1 cut(s) 98
XspI CTAG 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.