pycom07g28150

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0003548
Physical Location & Seq
Reverse (-)
27593825 .. 27595652
1828 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g28150.4

Sequence Viewer

Length: 807 bp
ATGTGGAATCAAGCAAACTGCAAACACGCCTTCGGTTTGATGATGGAGATAAGGACAGTGAAAGTTAGCAATGTCTCCCTCGGTGCAACGGAACTTGATTTAAAGGACTTCTTTTCCTTCTCTGGTGATATTGAATACATTGAAATTCAAGGTGACAACGAGAGGTCTCAGGTTGCATATGTTACCTTCAAGGATTTCAAGGGGGCAGAAACTTCAGTGCTTCTTTCGGGAGCAACAATTGTCGATCAGTCCGTTACCATAGATCTGGCTCCAGATTACAAGCTTCCAGCTGCTGTGGCTTCAGCGCTTCCAACTGCAACGGAAAATGTTAATCCTGTTGGTGCTCAACCTGCTGTTCACAACGCAGAGGATGTCGTGAGCAGCATGCTTGCCAAAGGATTCATTTTGGGAAAAGATGCGATCAACAAGGCAAAGGCCTTTGATGAGAAACACCAGCTTAGTTCCTCTGCAACGGCCACAGTTTCTTCTTTGGACCAAAAGATAGGTTTCACTGATAAACTTAGTGCTGGCACAACCATGGTAAATGATAAGGTGAAGCAAATGGATGAAAGGTTTCAGGTTTCTGAGAAGACCAAGATTGCGTTTTCAGCTGCTGAGCAAACGGTGAGTAGTGCTGGATCTGCAATCATGCAGAATCGTTACGTATTAACTGGGACATCATGGGTAACCGATGCTTTTAAAAGGGCTGCCAAGGCAGCAACAGAAGTGAGCCAGAAGACGGCGGATAAGGTTTCAGCTCAGGAAGAGGGTGGAAGGAAAGTGGAAGGAAGTGGTCCGGTCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

269

Amino Acids

28.64

Weight (kDa)

5.48

Isoelectric Point (pI)

27.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 358
AciI CCGC 1 cut(s) 743
AclWI GGATC 1 cut(s) 646
AcoI YGGCCR 1 cut(s) 474
AcsI RAATTY 1 cut(s) 144
AcuI CTGAAG 2 cut(s) 198, 285
AfeI AGCGCT 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 739
AgsI TTSAA 5 cut(s) 134, 143, 149, 190, 199
AluBI AGCT 5 cut(s) 283, 290, 457, 611, 758
AluI AGCT 5 cut(s) 283, 290, 457, 611, 758
Alw21I GWGCWC 1 cut(s) 346
Alw26I GTCTC 2 cut(s) 79, 171
AlwI GGATC 1 cut(s) 646
AlwNI CAGNNNCTG 2 cut(s) 293, 614
Aor51HI AGCGCT 1 cut(s) 306
AoxI GGCC 2 cut(s) 435, 474
ApeKI GCWGC 5 cut(s) 290, 381, 611, 707, 716
ApoI RAATTY 1 cut(s) 144
Asp700I GAANNNNTTC 1 cut(s) 573
AspLEI GCGC 1 cut(s) 307
AspS9I GGNCC 3 cut(s) 493, 794, 799
AsuHPI GGTGA 4 cut(s) 137, 164, 565, 637
AvaII GGWCC 3 cut(s) 493, 794, 799
BbsI GAAGAC 2 cut(s) 596, 743
Bbv12I GWGCWC 1 cut(s) 346
BbvI GCAGC 5 cut(s) 277, 393, 598, 694, 728
BccI CCATC 1 cut(s) 37
BceAI ACGGC 2 cut(s) 489, 756
BcoDI GTCTC 2 cut(s) 79, 171
BfoI RGCGCY 1 cut(s) 308
BfuAI ACCTGC 1 cut(s) 358
BglII AGATCT 1 cut(s) 262
BisI GCNGC 5 cut(s) 291, 382, 612, 708, 717
BlpI GCTNAGC 1 cut(s) 615
BlsI GCNGC 5 cut(s) 292, 383, 613, 709, 718
Bme18I GGWCC 3 cut(s) 493, 794, 799
BmgT120I GGNCC 3 cut(s) 493, 794, 799
BmiI GGNNCC 1 cut(s) 270
BmrI ACTGGG 1 cut(s) 681
BmsI GCATC 2 cut(s) 406, 682
BmuI ACTGGG 1 cut(s) 681
BpiI GAAGAC 2 cut(s) 596, 743
BpmI CTGGAG 1 cut(s) 255
Bpu10I CCTNAGC 1 cut(s) 759
Bpu1102I GCTNAGC 1 cut(s) 615
BsaAI YACGTR 1 cut(s) 664
BsaI GGTCTC 1 cut(s) 171
BsaJI CCNNGG 3 cut(s) 79, 537, 711
BsaWI WCCGGW 1 cut(s) 796
Bsc4I CCNNNNNNNGG 1 cut(s) 739
Bse1I ACTGG 1 cut(s) 676
Bse3DI GCAATG 1 cut(s) 76
BseDI CCNNGG 3 cut(s) 79, 537, 711
BseGI GGATG 2 cut(s) 376, 571
BseLI CCNNNNNNNGG 1 cut(s) 739
BseMI GCAATG 1 cut(s) 76
BseMII CTCAG 4 cut(s) 182, 576, 606, 773
BseNI ACTGG 1 cut(s) 676
BseXI GCAGC 5 cut(s) 277, 393, 598, 694, 728
BshFI GGCC 2 cut(s) 437, 476
BsiHKAI GWGCWC 1 cut(s) 346
BsiSI CCGG 1 cut(s) 797
BslFI GGGAC 1 cut(s) 688
BslI CCNNNNNNNGG 1 cut(s) 739
BsmAI GTCTC 2 cut(s) 79, 171
BsmFI GGGAC 1 cut(s) 688
BsnI GGCC 2 cut(s) 437, 476
Bso31I GGTCTC 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 346
Bsp143I GATC 4 cut(s) 244, 262, 420, 638
Bsp1720I GCTNAGC 1 cut(s) 615
Bsp19I CCATGG 1 cut(s) 537
BspACI CCGC 1 cut(s) 743
BspANI GGCC 2 cut(s) 437, 476
BspCNI CTCAG 4 cut(s) 181, 577, 607, 772
BspLI GGNNCC 1 cut(s) 270
BspMI ACCTGC 1 cut(s) 358
BspPI GGATC 1 cut(s) 646
BspTNI GGTCTC 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 76
BsrI ACTGG 1 cut(s) 676
BssECI CCNNGG 3 cut(s) 79, 537, 711
BssMI GATC 4 cut(s) 244, 262, 420, 638
BssT1I CCWWGG 2 cut(s) 537, 711
Bst4CI ACNGT 3 cut(s) 58, 481, 625
Bst6I CTCTTC 1 cut(s) 759
BstBAI YACGTR 1 cut(s) 664
BstC8I GCNNGC 3 cut(s) 386, 390, 529
BstDEI CTNAG 6 cut(s) 168, 458, 521, 585, 615, 759
BstDSI CCRYGG 1 cut(s) 537
BstEII GGTNACC 1 cut(s) 685
BstF5I GGATG 2 cut(s) 376, 571
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 4 cut(s) 247, 265, 423, 641
BstMAI GTCTC 2 cut(s) 79, 171
BstMBI GATC 4 cut(s) 244, 262, 420, 638
BstMWI GCNNNNNNNGC 6 cut(s) 296, 350, 608, 641, 713, 716
BstNSI RCATGY 1 cut(s) 388
BstPI GGTNACC 1 cut(s) 685
BstSNI TACGTA 1 cut(s) 664
BstV1I GCAGC 5 cut(s) 277, 393, 598, 694, 728
BstV2I GAAGAC 2 cut(s) 596, 743
BstX2I RGATCY 2 cut(s) 262, 638
BstXI CCANNNNNNTGG 1 cut(s) 265
BstYI RGATCY 2 cut(s) 262, 638
BsuRI GGCC 2 cut(s) 437, 476
BtgI CCRYGG 1 cut(s) 537
BtsCI GGATG 2 cut(s) 376, 571
BtsIMutI CAGTG 3 cut(s) 63, 222, 510
BveI ACCTGC 1 cut(s) 358
Cac8I GCNNGC 3 cut(s) 386, 390, 529
CaiI CAGNNNCTG 2 cut(s) 293, 614
CfoI GCGC 1 cut(s) 307
Cfr13I GGNCC 3 cut(s) 493, 794, 799
CviAII CATG 4 cut(s) 385, 538, 649, 681
DdeI CTNAG 6 cut(s) 168, 458, 521, 585, 615, 759
DpnI GATC 4 cut(s) 246, 264, 422, 640
DpnII GATC 4 cut(s) 244, 262, 420, 638
DraI TTTAAA 2 cut(s) 102, 700
EaeI YGGCCR 1 cut(s) 474
Eam1104I CTCTTC 1 cut(s) 759
EarI CTCTTC 1 cut(s) 759
EciI GGCGGA 1 cut(s) 758
Eco105I TACGTA 1 cut(s) 664
Eco130I CCWWGG 2 cut(s) 537, 711
Eco147I AGGCCT 1 cut(s) 437
Eco31I GGTCTC 1 cut(s) 171
Eco47I GGWCC 3 cut(s) 493, 794, 799
Eco47III AGCGCT 1 cut(s) 306
Eco57I CTGAAG 2 cut(s) 198, 285
Eco91I GGTNACC 1 cut(s) 685
EcoO65I GGTNACC 1 cut(s) 685
EcoT14I CCWWGG 2 cut(s) 537, 711
ErhI CCWWGG 2 cut(s) 537, 711
FaeI CATG 4 cut(s) 388, 541, 652, 684
FaiI YATR 7 cut(s) 178, 180, 260, 386, 539, 650, 682
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FaqI GGGAC 1 cut(s) 688
FatI CATG 4 cut(s) 384, 537, 648, 680
FauNDI CATATG 1 cut(s) 178
Fnu4HI GCNGC 5 cut(s) 291, 382, 612, 708, 717
FokI GGATG 2 cut(s) 383, 578
Fsp4HI GCNGC 5 cut(s) 291, 382, 612, 708, 717
GlaI GCGC 1 cut(s) 306
GluI GCNGC 5 cut(s) 291, 382, 612, 708, 717
GsuI CTGGAG 1 cut(s) 255
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 2 cut(s) 437, 476
HapII CCGG 1 cut(s) 797
HhaI GCGC 1 cut(s) 307
Hin1II CATG 4 cut(s) 388, 541, 652, 684
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 3 cut(s) 7, 399, 655
HpaII CCGG 1 cut(s) 797
HphI GGTGA 4 cut(s) 137, 164, 565, 637
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 1 cut(s) 586
Hpy188III TCNNGA 4 cut(s) 228, 272, 376, 761
Hpy8I GTNNAC 1 cut(s) 358
HpyAV CCTTC 5 cut(s) 40, 127, 196, 768, 779
HpyCH4III ACNGT 3 cut(s) 58, 481, 625
HpyCH4IV ACGT 1 cut(s) 663
HpyCH4V TGCA 7 cut(s) 21, 86, 176, 317, 470, 644, 652
HpyF10VI GCNNNNNNNGC 6 cut(s) 296, 350, 608, 641, 713, 716
HpyF3I CTNAG 6 cut(s) 168, 458, 521, 585, 615, 759
HpySE526I ACGT 1 cut(s) 663
Hsp92II CATG 4 cut(s) 388, 541, 652, 684
HspAI GCGC 1 cut(s) 305
Kzo9I GATC 4 cut(s) 244, 262, 420, 638
LmnI GCTCC 2 cut(s) 230, 274
Lsp1109I GCAGC 5 cut(s) 277, 393, 598, 694, 728
LweI GCATC 2 cut(s) 406, 682
MaeII ACGT 1 cut(s) 663
MaeIII GTNAC 5 cut(s) 152, 181, 253, 659, 685
MalI GATC 4 cut(s) 246, 264, 422, 640
MboI GATC 4 cut(s) 244, 262, 420, 638
MboII GAAGA 4 cut(s) 477, 601, 748, 776
MfeI CAATTG 1 cut(s) 237
MflI RGATCY 2 cut(s) 262, 638
MhlI GDGCHC 1 cut(s) 346
MluCI AATT 2 cut(s) 144, 237
MmeI TCCRAC 1 cut(s) 335
MnlI CCTC 5 cut(s) 89, 156, 361, 475, 760
MroXI GAANNNNTTC 1 cut(s) 573
MseI TTAA 4 cut(s) 101, 330, 668, 699
MslI CAYNNNNRTG 1 cut(s) 536
MspA1I CMGCKG 2 cut(s) 290, 611
MspI CCGG 1 cut(s) 797
MunI CAATTG 1 cut(s) 237
MwoI GCNNNNNNNGC 6 cut(s) 296, 350, 608, 641, 713, 716
NcoI CCATGG 1 cut(s) 537
NdeI CATATG 1 cut(s) 178
NdeII GATC 4 cut(s) 244, 262, 420, 638
NlaIII CATG 4 cut(s) 388, 541, 652, 684
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 1 cut(s) 152
NspI RCATGY 1 cut(s) 388
PaeI GCATGC 1 cut(s) 388
PceI AGGCCT 1 cut(s) 437
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PdmI GAANNNNTTC 1 cut(s) 573
PfeI GAWTC 3 cut(s) 7, 399, 655
PkrI GCNGC 5 cut(s) 292, 383, 613, 709, 718
Ppu21I YACGTR 1 cut(s) 664
PspEI GGTNACC 1 cut(s) 685
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 3 cut(s) 493, 794, 799
PstNI CAGNNNCTG 2 cut(s) 293, 614
PsuI RGATCY 2 cut(s) 262, 638
PvuII CAGCTG 2 cut(s) 290, 611
RseI CAYNNNNRTG 1 cut(s) 536
SaqAI TTAA 4 cut(s) 101, 330, 668, 699
SatI GCNGC 5 cut(s) 291, 382, 612, 708, 717
Sau3AI GATC 4 cut(s) 244, 262, 420, 638
Sau96I GGNCC 3 cut(s) 493, 794, 799
SduI GDGCHC 1 cut(s) 346
SfaNI GCATC 2 cut(s) 406, 682
SinI GGWCC 3 cut(s) 493, 794, 799
SmiMI CAYNNNNRTG 1 cut(s) 536
SnaBI TACGTA 1 cut(s) 664
SphI GCATGC 1 cut(s) 388
Sse9I AATT 2 cut(s) 144, 237
SseBI AGGCCT 1 cut(s) 437
SsiI CCGC 1 cut(s) 743
StuI AGGCCT 1 cut(s) 437
StyI CCWWGG 2 cut(s) 537, 711
TaaI ACNGT 3 cut(s) 58, 481, 625
TaiI ACGT 1 cut(s) 666
TaqI TCGA 1 cut(s) 243
TasI AATT 2 cut(s) 144, 237
TfiI GAWTC 3 cut(s) 7, 399, 655
Tru1I TTAA 4 cut(s) 101, 330, 668, 699
Tru9I TTAA 4 cut(s) 101, 330, 668, 699
TscAI CASTG 3 cut(s) 63, 222, 517
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 5 cut(s) 290, 381, 611, 707, 716
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 391, 582
TspGWI ACGGA 3 cut(s) 104, 241, 335
TspRI CASTG 3 cut(s) 63, 222, 517
VpaK11BI GGWCC 3 cut(s) 493, 794, 799
XapI RAATTY 1 cut(s) 144
XceI RCATGY 1 cut(s) 388
XmnI GAANNNNTTC 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.