RLG00000026047

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003548
Physical Location & Seq
Forward (+)
228487 .. 230517
2031 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026047

Sequence Viewer

Length: 780 bp
ATGGCTGCAGATTACAAGCTGCCAGCTGCTGTGGCATCAACACTTCCAGCCGCAACAGTTAATGTAAATGCTGGTGGCCCCAAAGATGCTGTCCGAAAGGCAGAGGATGTTGTGAGCAGCATGCTAGCAAAAGGGTTTATTTTGGGAAAAGATGCTATTAGCAAGGCAAAAGCCTTTGATGAGAAACACCAGATCTATTCCACTGCTACGGCCACAGTTGCTACATTGGACCAAAAGATTGGTTTTAGTGAGAAACTTAGTGCCGGCACAACCATGGTAAACGATAAACTGAGGCAAATGGATGAGAAGTTTCAGGTATCTGAGAAGACAAAGTCTGCATATTCAGCTGCAGGGCAAACGGTCAGTACTGCAGGATCTGCACTCATGAGCAACCGTTACATATTAACTGGGACAGCATGGGCTACCGGTGCTTATAATAGGGCTGCCCAGACAGCAAATGAAGTGAGCCAGAAGACAAAGGAAAAGGTTTTAGCTGAGGAAGATAAAAATGGCAATAAAGCAGAAGGCAGTAAAGAGGAAGGCAGTCAAGCGGAAGGCAGTAAAGCGGAAGGCAGTCAAGGGGAAGGCAGTCAAGCAGAAGGCACTAAAGCAGAATGCAGTAAAGCGGAAGGCAGTCAAGCAGATGGCAATAAAGCGGAAGGCAGTCAAGCGGGAGGCAATAAAGCGGAAGGCAATAGAGCAGAAGGTAGTCAAGCTGAAGGCAATAAATTAGCGGAAGACAGTAAAGCGGAAAGCAATAAAGTGGAAGGCAGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

260

Amino Acids

26.65

Weight (kDa)

5.53

Isoelectric Point (pI)

30.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 435
AciI CCGC 9 cut(s) 51, 551, 566, 626, 656, 671, 686, 734, 749
AclWI GGATC 1 cut(s) 382
AcoI YGGCCR 1 cut(s) 210
AcuI CTGAAG 1 cut(s) 738
AfaI GTAC 1 cut(s) 367
AgeI ACCGGT 1 cut(s) 425
AluBI AGCT 5 cut(s) 19, 26, 347, 494, 716
AluI AGCT 5 cut(s) 19, 26, 347, 494, 716
AlwI GGATC 1 cut(s) 382
AlwNI CAGNNNCTG 2 cut(s) 29, 377
AoxI GGCC 2 cut(s) 76, 210
ApeKI GCWGC 6 cut(s) 5, 19, 26, 117, 347, 443
ArsI GACNNNNNNTTYG 2 cut(s) 75, 107
AsiGI ACCGGT 1 cut(s) 425
AspS9I GGNCC 2 cut(s) 77, 229
AsuNHI GCTAGC 1 cut(s) 124
AvaII GGWCC 1 cut(s) 229
BbsI GAAGAC 3 cut(s) 332, 479, 744
BbvCI CCTCAGC 1 cut(s) 495
BbvI GCAGC 5 cut(s) 6, 13, 129, 334, 430
BccI CCATC 1 cut(s) 638
BceAI ACGGC 1 cut(s) 225
BfaI CTAG 1 cut(s) 125
BfmI CTRYAG 3 cut(s) 6, 348, 369
BglII AGATCT 1 cut(s) 192
BisI GCNGC 7 cut(s) 6, 20, 27, 51, 118, 348, 444
BlsI GCNGC 7 cut(s) 7, 21, 28, 52, 119, 349, 445
BmcAI AGTACT 1 cut(s) 367
Bme18I GGWCC 1 cut(s) 229
BmgT120I GGNCC 2 cut(s) 77, 229
BmiI GGNNCC 1 cut(s) 79
BmrI ACTGGG 1 cut(s) 417
BmsI GCATC 3 cut(s) 44, 76, 142
BmtI GCTAGC 1 cut(s) 128
BmuI ACTGGG 1 cut(s) 417
BpiI GAAGAC 3 cut(s) 332, 479, 744
Bpu10I CCTNAGC 1 cut(s) 495
BsaJI CCNNGG 1 cut(s) 273
BsaWI WCCGGW 1 cut(s) 425
Bse118I RCCGGY 2 cut(s) 263, 425
Bse1I ACTGG 1 cut(s) 412
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 2 cut(s) 112, 307
BseMII CTCAG 3 cut(s) 281, 312, 486
BseNI ACTGG 1 cut(s) 412
BseXI GCAGC 5 cut(s) 6, 13, 129, 334, 430
BsgI GTGCAG 1 cut(s) 363
BshFI GGCC 2 cut(s) 78, 212
BshTI ACCGGT 1 cut(s) 425
BsiSI CCGG 2 cut(s) 264, 426
BslFI GGGAC 1 cut(s) 424
BsmFI GGGAC 1 cut(s) 424
BsmI GAATGC 1 cut(s) 620
BsnI GGCC 2 cut(s) 78, 212
Bsp143I GATC 2 cut(s) 192, 374
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 9 cut(s) 51, 551, 566, 626, 656, 671, 686, 734, 749
BspANI GGCC 2 cut(s) 78, 212
BspCNI CTCAG 3 cut(s) 282, 313, 487
BspHI TCATGA 1 cut(s) 384
BspLI GGNNCC 1 cut(s) 79
BspMAI CTGCAG 3 cut(s) 10, 352, 373
BspOI GCTAGC 1 cut(s) 128
BspPI GGATC 1 cut(s) 382
BsrFI RCCGGY 2 cut(s) 263, 425
BsrI ACTGG 1 cut(s) 412
BssAI RCCGGY 2 cut(s) 263, 425
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 2 cut(s) 192, 374
BssT1I CCWWGG 1 cut(s) 273
Bst4CI ACNGT 5 cut(s) 58, 217, 361, 395, 743
BstAPI GCANNNNNTGC 1 cut(s) 377
BstC8I GCNNGC 4 cut(s) 24, 122, 126, 265
BstDEI CTNAG 5 cut(s) 257, 290, 321, 495, 777
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 2 cut(s) 112, 307
BstKTI GATC 2 cut(s) 195, 377
BstMBI GATC 2 cut(s) 192, 374
BstMWI GCNNNNNNNGC 6 cut(s) 32, 218, 344, 377, 428, 452
BstNSI RCATGY 1 cut(s) 124
BstSFI CTRYAG 3 cut(s) 6, 348, 369
BstV1I GCAGC 5 cut(s) 6, 13, 129, 334, 430
BstV2I GAAGAC 3 cut(s) 332, 479, 744
BstX2I RGATCY 2 cut(s) 192, 374
BstXI CCANNNNNNTGG 1 cut(s) 239
BstYI RGATCY 2 cut(s) 192, 374
BsuRI GGCC 2 cut(s) 78, 212
BtgI CCRYGG 1 cut(s) 273
BtsCI GGATG 2 cut(s) 112, 307
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 4 cut(s) 24, 122, 126, 265
CaiI CAGNNNCTG 2 cut(s) 29, 377
CciI TCATGA 1 cut(s) 384
Cfr10I RCCGGY 2 cut(s) 263, 425
Cfr13I GGNCC 2 cut(s) 77, 229
Csp6I GTAC 1 cut(s) 366
CspAI ACCGGT 1 cut(s) 425
CviAII CATG 4 cut(s) 121, 274, 385, 417
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 5 cut(s) 257, 290, 321, 495, 777
DpnI GATC 2 cut(s) 194, 376
DpnII GATC 2 cut(s) 192, 374
EaeI YGGCCR 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 738
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 4 cut(s) 124, 277, 388, 420
FaiI YATR 7 cut(s) 122, 275, 340, 386, 401, 418, 435
FaqI GGGAC 1 cut(s) 424
FatI CATG 4 cut(s) 120, 273, 384, 416
FauI CCCGC 1 cut(s) 664
Fnu4HI GCNGC 7 cut(s) 6, 20, 27, 51, 118, 348, 444
FokI GGATG 2 cut(s) 119, 314
Fsp4HI GCNGC 7 cut(s) 6, 20, 27, 51, 118, 348, 444
FspBI CTAG 1 cut(s) 125
GluI GCNGC 7 cut(s) 6, 20, 27, 51, 118, 348, 444
HaeIII GGCC 2 cut(s) 78, 212
HapII CCGG 2 cut(s) 264, 426
Hin1II CATG 4 cut(s) 124, 277, 388, 420
HpaII CCGG 2 cut(s) 264, 426
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 2 cut(s) 95, 322
Hpy188III TCNNGA 1 cut(s) 385
Hpy8I GTNNAC 1 cut(s) 280
HpyCH4III ACNGT 5 cut(s) 58, 217, 361, 395, 743
HpyCH4V TGCA 6 cut(s) 8, 338, 350, 371, 380, 618
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 218, 344, 377, 428, 452
HpyF3I CTNAG 5 cut(s) 257, 290, 321, 495, 777
Hsp92II CATG 4 cut(s) 124, 277, 388, 420
KroI GCCGGC 1 cut(s) 263
KroNI GCCGGC 1 cut(s) 265
Kzo9I GATC 2 cut(s) 192, 374
Lsp1109I GCAGC 5 cut(s) 6, 13, 129, 334, 430
LweI GCATC 3 cut(s) 44, 76, 142
MaeI CTAG 1 cut(s) 125
MaeIII GTNAC 1 cut(s) 395
MalI GATC 2 cut(s) 194, 376
MboI GATC 2 cut(s) 192, 374
MboII GAAGA 4 cut(s) 337, 484, 512, 749
MflI RGATCY 2 cut(s) 192, 374
MluCI AATT 1 cut(s) 728
MnlI CCTC 5 cut(s) 97, 285, 490, 529, 668
MroNI GCCGGC 1 cut(s) 263
MseI TTAA 2 cut(s) 60, 404
MslI CAYNNNNRTG 1 cut(s) 272
MspA1I CMGCKG 2 cut(s) 26, 347
MspI CCGG 2 cut(s) 264, 426
Mva1269I GAATGC 1 cut(s) 620
MwoI GCNNNNNNNGC 6 cut(s) 32, 218, 344, 377, 428, 452
NaeI GCCGGC 1 cut(s) 265
NcoI CCATGG 1 cut(s) 273
NdeII GATC 2 cut(s) 192, 374
NgoMIV GCCGGC 1 cut(s) 263
NheI GCTAGC 1 cut(s) 124
NlaIII CATG 4 cut(s) 124, 277, 388, 420
NlaIV GGNNCC 1 cut(s) 79
NspI RCATGY 1 cut(s) 124
PaeI GCATGC 1 cut(s) 124
PagI TCATGA 1 cut(s) 384
PctI GAATGC 1 cut(s) 620
PdiI GCCGGC 1 cut(s) 265
PflFI GACNNNGTC 1 cut(s) 331
PinAI ACCGGT 1 cut(s) 425
PkrI GCNGC 7 cut(s) 7, 21, 28, 52, 119, 349, 445
PsiI TTATAA 1 cut(s) 435
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 2 cut(s) 77, 229
PstI CTGCAG 3 cut(s) 10, 352, 373
PstNI CAGNNNCTG 2 cut(s) 29, 377
PsuI RGATCY 2 cut(s) 192, 374
PsyI GACNNNGTC 1 cut(s) 331
PvuII CAGCTG 2 cut(s) 26, 347
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
RseI CAYNNNNRTG 1 cut(s) 272
SaqAI TTAA 2 cut(s) 60, 404
SatI GCNGC 7 cut(s) 6, 20, 27, 51, 118, 348, 444
Sau3AI GATC 2 cut(s) 192, 374
Sau96I GGNCC 2 cut(s) 77, 229
ScaI AGTACT 1 cut(s) 367
SetI ASST 8 cut(s) 21, 28, 318, 349, 489, 496, 709, 718
SfaNI GCATC 3 cut(s) 44, 76, 142
SfcI CTRYAG 3 cut(s) 6, 348, 369
SinI GGWCC 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 272
SphI GCATGC 1 cut(s) 124
Sse9I AATT 1 cut(s) 728
SsiI CCGC 9 cut(s) 51, 551, 566, 626, 656, 671, 686, 734, 749
SspMI CTAG 1 cut(s) 125
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 5 cut(s) 58, 217, 361, 395, 743
TasI AATT 1 cut(s) 728
TatI WGTACW 1 cut(s) 365
TauI GCSGC 1 cut(s) 53
Tru1I TTAA 2 cut(s) 60, 404
Tru9I TTAA 2 cut(s) 60, 404
TscAI CASTG 1 cut(s) 208
TseI GCWGC 6 cut(s) 5, 19, 26, 117, 347, 443
TspDTI ATGAA 1 cut(s) 474
TspRI CASTG 1 cut(s) 208
Tth111I GACNNNGTC 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 229
XceI RCATGY 1 cut(s) 124
XspI CTAG 1 cut(s) 125
ZrmI AGTACT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.