Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003548

Physical Location & Seq

Genomic Coordinates Reverse (-)

30155073 .. 30157203

Gene Structure 2131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G327200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAGATAAGGACAGTGAAAGTTAACAATGTCTCCCTGGGTGCAACGGAGAATGATTTAAAGGAATTCTTTTGCTTCTCCGGTGAAATCGAATACATTGAAATACAAGGGGACAACGAGAGGTCTCAGCTTGCATATGTTACCTTCAAGAACCCCAAAGGGGCAGAAACTTCAGTGCTTCTTTCGGGAGCAACTATAGTTGATCAGTCCGTTACCATAGACCTGGCTCCAGATTACAAGCTTCCAGCCGCTGCAGATTCAGCACTTCCAACTGCAACAGATAATGTAAGTTCTGGTGGTGCTGCCCAAAACGCAGAGGATGTTGTGAGCAGCATGCTAGCCAAAGGCTTTGTTTTGGGAAAAGATGCAATCAACAAGGCAAAGGCCTTTGATGAGAAACACCAGCTTACTTCAACTGCAACGGCCACAGTAACTTCTTTGGACCAAAAGATTGGTTTCACTGAGAAAATTAGTGCTGGCACAAGCATGGTAAATGATAAGGTGAGGGAAATGGATGAAAAGTTTCAGGTTTCTGAGAAGACCAAGAATGCGTTTTCAGCTGCAGAGCAGACGGTGAGCAGTGCTGGATCTGCCATCATGAAAAACCGTTACATACTAACTGGGACGTCGTGGGTAACCGGTGCGTATAACAGGGCAGCCAAGGCAGCAGGTGAAGTGGGGCAGAAGACCATGGATAAGGTTTCAGCAGAGGAAGAGGGTGGAAAGAAAGTGGAAGGCAGTCAGATCACTCAAGTACATTCTCCCAAGGATCCTACCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

261

Amino Acids

27.66

Weight (kDa)

5.16

Isoelectric Point (pI)

24.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17720 AT5G46870 AT5G46870
fragaria_vesca	FvH4_5g22870 FvH4_7g34070 FvH4_7g34070 FvH4_7g34070
malus_domestica	MD01G1236900.v1.1 MD06G1025100.v1.1 MD06G1025200.v1.1 MD07G1309500.v1.1
prunus_persica	Prupe.2G327200_v2.0.a1 Prupe.5G029900_v2.0.a1
pyrus_communis	pycom07g28150
rosa_chinensis	RchiOBHm_Chr1g0384341 RchiOBHm_Chr7g0211571
rosa_laevigata	RLG00000002998 RLG00000026047
rosa_multiflora	Rmu_co8225890.1_g000001 Rmu_sc0016737.1_g000005 Rmu_ssc0000317.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247740 Rroxscaffold_4G00276760
rosa_rugosa	Rorug01G0447000 Rorug07G0126000
rosa_samantha	Rh1AG472300 Rh1BG430100 Rh1CG443000 Rh1DG462700 Rh7AG258300 Rh7BG252500 Rh7CG275400 Rh7DG265800
rosa_wichuraiana	Rw1G040030 Rw7G022090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	659
AatII	GACGTC	1 cut(s)	629
Acc36I	ACCTGC	1 cut(s)	659
AciI	CCGC	1 cut(s)	249
AclWI	GGATC	3 cut(s)	595, 764, 777
AcoI	YGGCCR	1 cut(s)	423
AcsI	RAATTY	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	156
AcyI	GRCGYC	1 cut(s)	626
AfaI	GTAC	1 cut(s)	756
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgeI	ACCGGT	1 cut(s)	638
AgsI	TTSAA	3 cut(s)	101, 148, 414
AjnI	CCWGG	2 cut(s)	36, 222
AluBI	AGCT	4 cut(s)	130, 241, 406, 560
AluI	AGCT	4 cut(s)	130, 241, 406, 560
Alw26I	GTCTC	2 cut(s)	37, 129
AlwI	GGATC	3 cut(s)	595, 764, 777
AlwNI	CAGNNNCTG	1 cut(s)	251
AoxI	GGCC	2 cut(s)	384, 423
ApeKI	GCWGC	6 cut(s)	251, 302, 330, 560, 656, 665
ApoI	RAATTY	1 cut(s)	65
AsiGI	ACCGGT	1 cut(s)	638
Asp700I	GAANNNNTTC	1 cut(s)	522
AspS9I	GGNCC	1 cut(s)	442
AsuHPI	GGTGA	4 cut(s)	95, 514, 586, 683
AsuNHI	GCTAGC	1 cut(s)	337
AvaII	GGWCC	1 cut(s)	442
BamHI	GGATCC	1 cut(s)	769
BbsI	GAAGAC	2 cut(s)	545, 692
BbvI	GCAGC	6 cut(s)	238, 289, 342, 547, 668, 677
BccI	CCATC	1 cut(s)	602
BceAI	ACGGC	1 cut(s)	438
BciT130I	CCWGG	2 cut(s)	38, 224
BclI	TGATCA	1 cut(s)	202
BcoDI	GTCTC	2 cut(s)	37, 129
BfaI	CTAG	1 cut(s)	338
BfmI	CTRYAG	3 cut(s)	195, 252, 561
BfuAI	ACCTGC	1 cut(s)	659
BisI	GCNGC	7 cut(s)	249, 252, 303, 331, 561, 657, 666
BlsI	GCNGC	7 cut(s)	250, 253, 304, 332, 562, 658, 667
Bme1390I	CCNGG	2 cut(s)	38, 224
Bme18I	GGWCC	1 cut(s)	442
BmgT120I	GGNCC	1 cut(s)	442
BmiI	GGNNCC	2 cut(s)	228, 771
BmrFI	CCNGG	2 cut(s)	38, 224
BmrI	ACTGGG	1 cut(s)	630
BmsI	GCATC	1 cut(s)	355
BmtI	GCTAGC	1 cut(s)	341
BmuI	ACTGGG	1 cut(s)	630
BpiI	GAAGAC	2 cut(s)	545, 692
BpmI	CTGGAG	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	735
BsaHI	GRCGYC	1 cut(s)	626
BsaI	GGTCTC	1 cut(s)	129
BsaJI	CCNNGG	5 cut(s)	36, 37, 660, 690, 765
BsaWI	WCCGGW	2 cut(s)	80, 638
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse118I	RCCGGY	1 cut(s)	638
Bse1I	ACTGG	1 cut(s)	625
BseBI	CCWGG	2 cut(s)	38, 224
BseDI	CCNNGG	5 cut(s)	36, 37, 660, 690, 765
BseGI	GGATG	2 cut(s)	325, 520
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	3 cut(s)	140, 453, 525
BseNI	ACTGG	1 cut(s)	625
BseXI	GCAGC	6 cut(s)	238, 289, 342, 547, 668, 677
BshFI	GGCC	2 cut(s)	386, 425
BshTI	ACCGGT	1 cut(s)	638
BsiSI	CCGG	2 cut(s)	81, 639
BslFI	GGGAC	2 cut(s)	125, 637
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	2 cut(s)	37, 129
BsmFI	GGGAC	2 cut(s)	125, 637
BsmI	GAATGC	1 cut(s)	553
BsnI	GGCC	2 cut(s)	386, 425
Bso31I	GGTCTC	1 cut(s)	129
Bsp143I	GATC	4 cut(s)	202, 587, 744, 769
Bsp19I	CCATGG	1 cut(s)	690
BspACI	CCGC	1 cut(s)	249
BspANI	GGCC	2 cut(s)	386, 425
BspCNI	CTCAG	3 cut(s)	139, 454, 526
BspHI	TCATGA	1 cut(s)	597
BspLI	GGNNCC	2 cut(s)	228, 771
BspMAI	CTGCAG	2 cut(s)	256, 565
BspMI	ACCTGC	1 cut(s)	659
BspOI	GCTAGC	1 cut(s)	341
BspPI	GGATC	3 cut(s)	595, 764, 777
BspTNI	GGTCTC	1 cut(s)	129
BsrFI	RCCGGY	1 cut(s)	638
BsrI	ACTGG	1 cut(s)	625
BssAI	RCCGGY	1 cut(s)	638
BssECI	CCNNGG	5 cut(s)	36, 37, 660, 690, 765
BssMI	GATC	4 cut(s)	202, 587, 744, 769
BssNI	GRCGYC	1 cut(s)	626
BssT1I	CCWWGG	3 cut(s)	660, 690, 765
Bst2UI	CCWGG	2 cut(s)	38, 224
Bst4CI	ACNGT	4 cut(s)	16, 430, 574, 608
Bst6I	CTCTTC	1 cut(s)	708
BstACI	GRCGYC	1 cut(s)	626
BstC8I	GCNNGC	4 cut(s)	132, 335, 339, 478
BstDEI	CTNAG	3 cut(s)	126, 462, 534
BstDSI	CCRYGG	1 cut(s)	690
BstEII	GGTNACC	1 cut(s)	634
BstF5I	GGATG	2 cut(s)	325, 520
BstKTI	GATC	4 cut(s)	205, 590, 747, 772
BstMAI	GTCTC	2 cut(s)	37, 129
BstMBI	GATC	4 cut(s)	202, 587, 744, 769
BstMWI	GCNNNNNNNGC	6 cut(s)	260, 311, 557, 590, 662, 665
BstNI	CCWGG	2 cut(s)	38, 224
BstNSI	RCATGY	1 cut(s)	337
BstPI	GGTNACC	1 cut(s)	634
BstSCI	CCNGG	2 cut(s)	36, 222
BstSFI	CTRYAG	3 cut(s)	195, 252, 561
BstV1I	GCAGC	6 cut(s)	238, 289, 342, 547, 668, 677
BstV2I	GAAGAC	2 cut(s)	545, 692
BstX2I	RGATCY	2 cut(s)	587, 769
BstXI	CCANNNNNNTGG	2 cut(s)	223, 452
BstYI	RGATCY	2 cut(s)	587, 769
BsuRI	GGCC	2 cut(s)	386, 425
BtgI	CCRYGG	1 cut(s)	690
BtsCI	GGATG	2 cut(s)	325, 520
BtsI	GCAGTG	1 cut(s)	586
BtsIMutI	CAGTG	4 cut(s)	21, 180, 459, 586
BveI	ACCTGC	1 cut(s)	659
Cac8I	GCNNGC	4 cut(s)	132, 335, 339, 478
CaiI	CAGNNNCTG	1 cut(s)	251
CciI	TCATGA	1 cut(s)	597
Cfr10I	RCCGGY	1 cut(s)	638
Cfr13I	GGNCC	1 cut(s)	442
Csp6I	GTAC	1 cut(s)	755
CspAI	ACCGGT	1 cut(s)	638
CviAII	CATG	4 cut(s)	334, 487, 598, 691
CviQI	GTAC	1 cut(s)	755
DdeI	CTNAG	3 cut(s)	126, 462, 534
DpnI	GATC	4 cut(s)	204, 589, 746, 771
DpnII	GATC	4 cut(s)	202, 587, 744, 769
DraI	TTTAAA	1 cut(s)	60
EaeI	YGGCCR	1 cut(s)	423
Eam1104I	CTCTTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	708
Eco130I	CCWWGG	3 cut(s)	660, 690, 765
Eco147I	AGGCCT	1 cut(s)	386
Eco31I	GGTCTC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	442
Eco57I	CTGAAG	1 cut(s)	156
Eco91I	GGTNACC	1 cut(s)	634
EcoO65I	GGTNACC	1 cut(s)	634
EcoRI	GAATTC	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	36, 222
EcoT14I	CCWWGG	3 cut(s)	660, 690, 765
ErhI	CCWWGG	3 cut(s)	660, 690, 765
FaeI	CATG	4 cut(s)	337, 490, 601, 694
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	2 cut(s)	125, 637
FatI	CATG	4 cut(s)	333, 486, 597, 690
FauNDI	CATATG	1 cut(s)	136
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	7 cut(s)	249, 252, 303, 331, 561, 657, 666
FokI	GGATG	2 cut(s)	332, 527
Fsp4HI	GCNGC	7 cut(s)	249, 252, 303, 331, 561, 657, 666
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	7 cut(s)	249, 252, 303, 331, 561, 657, 666
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	386, 425
HapII	CCGG	2 cut(s)	81, 639
Hin1I	GRCGYC	1 cut(s)	626
Hin1II	CATG	4 cut(s)	337, 490, 601, 694
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	1 cut(s)	257
HpaI	GTTAAC	1 cut(s)	25
HpaII	CCGG	2 cut(s)	81, 639
HphI	GGTGA	4 cut(s)	95, 514, 586, 683
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	535, 744
Hpy188III	TCNNGA	4 cut(s)	148, 186, 230, 598
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	631
HpyAV	CCTTC	2 cut(s)	154, 728
HpyCH4III	ACNGT	4 cut(s)	16, 430, 574, 608
HpyCH4IV	ACGT	1 cut(s)	626
HpyCH4V	TGCA	7 cut(s)	44, 134, 254, 275, 368, 419, 563
HpyF10VI	GCNNNNNNNGC	6 cut(s)	260, 311, 557, 590, 662, 665
HpyF3I	CTNAG	3 cut(s)	126, 462, 534
HpySE526I	ACGT	1 cut(s)	626
Hsp92I	GRCGYC	1 cut(s)	626
Hsp92II	CATG	4 cut(s)	337, 490, 601, 694
Ksp22I	TGATCA	1 cut(s)	202
KspAI	GTTAAC	1 cut(s)	25
Kzo9I	GATC	4 cut(s)	202, 587, 744, 769
LmnI	GCTCC	2 cut(s)	188, 232
Lsp1109I	GCAGC	6 cut(s)	238, 289, 342, 547, 668, 677
LweI	GCATC	1 cut(s)	355
MaeI	CTAG	1 cut(s)	338
MaeII	ACGT	1 cut(s)	626
MaeIII	GTNAC	5 cut(s)	139, 211, 430, 608, 634
MalI	GATC	4 cut(s)	204, 589, 746, 771
MboI	GATC	4 cut(s)	202, 587, 744, 769
MboII	GAAGA	3 cut(s)	550, 697, 725
MflI	RGATCY	2 cut(s)	587, 769
MluCI	AATT	2 cut(s)	65, 468
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	5 cut(s)	114, 310, 498, 703, 709
MroXI	GAANNNNTTC	1 cut(s)	522
MseI	TTAA	2 cut(s)	24, 59
MslI	CAYNNNNRTG	1 cut(s)	485
MspA1I	CMGCKG	2 cut(s)	251, 560
MspI	CCGG	2 cut(s)	81, 639
MspR9I	CCNGG	2 cut(s)	38, 224
Mva1269I	GAATGC	1 cut(s)	553
MvaI	CCWGG	2 cut(s)	38, 224
MwoI	GCNNNNNNNGC	6 cut(s)	260, 311, 557, 590, 662, 665
NcoI	CCATGG	1 cut(s)	690
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	4 cut(s)	202, 587, 744, 769
NheI	GCTAGC	1 cut(s)	337
NlaIII	CATG	4 cut(s)	337, 490, 601, 694
NlaIV	GGNNCC	2 cut(s)	228, 771
NspI	RCATGY	1 cut(s)	337
PaeI	GCATGC	1 cut(s)	337
PagI	TCATGA	1 cut(s)	597
PaqCI	CACCTGC	1 cut(s)	659
PasI	CCCWGGG	1 cut(s)	37
PceI	AGGCCT	1 cut(s)	386
PctI	GAATGC	1 cut(s)	553
PdmI	GAANNNNTTC	1 cut(s)	522
PfeI	GAWTC	1 cut(s)	257
PinAI	ACCGGT	1 cut(s)	638
PkrI	GCNGC	7 cut(s)	250, 253, 304, 332, 562, 658, 667
Psp6I	CCWGG	2 cut(s)	36, 222
PspEI	GGTNACC	1 cut(s)	634
PspGI	CCWGG	2 cut(s)	36, 222
PspN4I	GGNNCC	2 cut(s)	228, 771
PspPI	GGNCC	1 cut(s)	442
PstI	CTGCAG	2 cut(s)	256, 565
PstNI	CAGNNNCTG	1 cut(s)	251
PsuI	RGATCY	2 cut(s)	587, 769
PvuII	CAGCTG	1 cut(s)	560
RsaI	GTAC	1 cut(s)	756
RsaNI	GTAC	1 cut(s)	755
RseI	CAYNNNNRTG	1 cut(s)	485
SaqAI	TTAA	2 cut(s)	24, 59
SatI	GCNGC	7 cut(s)	249, 252, 303, 331, 561, 657, 666
Sau3AI	GATC	4 cut(s)	202, 587, 744, 769
Sau96I	GGNCC	1 cut(s)	442
ScrFI	CCNGG	2 cut(s)	38, 224
SfaNI	GCATC	1 cut(s)	355
SfcI	CTRYAG	3 cut(s)	195, 252, 561
SinI	GGWCC	1 cut(s)	442
SmiMI	CAYNNNNRTG	1 cut(s)	485
SmlI	CTYRAG	1 cut(s)	750
SmoI	CTYRAG	1 cut(s)	750
SphI	GCATGC	1 cut(s)	337
Sse9I	AATT	2 cut(s)	65, 468
SseBI	AGGCCT	1 cut(s)	386
SsiI	CCGC	1 cut(s)	249
SspMI	CTAG	1 cut(s)	338
StuI	AGGCCT	1 cut(s)	386
StyD4I	CCNGG	2 cut(s)	36, 222
StyI	CCWWGG	3 cut(s)	660, 690, 765
TaaI	ACNGT	4 cut(s)	16, 430, 574, 608
TaiI	ACGT	1 cut(s)	629
TaqI	TCGA	1 cut(s)	90
TasI	AATT	2 cut(s)	65, 468
TatI	WGTACW	1 cut(s)	754
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	2 cut(s)	24, 59
Tru9I	TTAA	2 cut(s)	24, 59
TscAI	CASTG	4 cut(s)	21, 180, 466, 586
TseI	GCWGC	6 cut(s)	251, 302, 330, 560, 656, 665
TspDTI	ATGAA	2 cut(s)	531, 614
TspGWI	ACGGA	2 cut(s)	62, 199
TspRI	CASTG	4 cut(s)	21, 180, 466, 586
VpaK11BI	GGWCC	1 cut(s)	442
XapI	RAATTY	1 cut(s)	65
XceI	RCATGY	1 cut(s)	337
XmnI	GAANNNNTTC	1 cut(s)	522
XspI	CTAG	1 cut(s)	338
ZraI	GACGTC	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.