Rmu_co8225890.1_g000001

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8225890.1
OG0003548
Physical Location & Seq
Forward (+)
1 .. 748
748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8225890.1_g000001.1.cds

Sequence Viewer

Length: 475 bp
gcaacagttaatgtaaatgctggtggccccaaagatgctgtccgaaaggcagaggatgttgtgagcagcatgctagcaaaagggttcattttgggaaaagatgctattagcaaggcaaaagcctttgatgagaaacaccagatctattccactgctacagccacagttgctacattggaccaaaagattggctttagtgagaaacttagtgccggcacatccatggtaaacgataaactgaggcaaatggatgaaaagtttcaggtctctgagaagacaaagtctgcatattcagctgcagggcaaacggtcagtactgcaggatctgcactcatgagcaaccgttacatattaactgggacagcatgggctaccggtgcttataatagggctgcccagacagcaaatgaagtgagccagaagacaaaggaaaaggttttagctgaggaagataaaaatggcaataaagcggaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

158

Amino Acids

16.76

Weight (kDa)

9.2

Isoelectric Point (pI)

19.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 384
AciI CCGC 1 cut(s) 470
AclWI GGATC 1 cut(s) 331
AfaI GTAC 1 cut(s) 316
AgeI ACCGGT 1 cut(s) 374
AluBI AGCT 2 cut(s) 296, 443
AluI AGCT 2 cut(s) 296, 443
Alw26I GTCTC 1 cut(s) 271
AlwI GGATC 1 cut(s) 331
AlwNI CAGNNNCTG 1 cut(s) 326
AoxI GGCC 1 cut(s) 25
ApeKI GCWGC 3 cut(s) 66, 296, 392
ArsI GACNNNNNNTTYG 2 cut(s) 24, 56
AsiGI ACCGGT 1 cut(s) 374
Asp700I GAANNNNTTC 1 cut(s) 258
AspS9I GGNCC 2 cut(s) 26, 178
AsuNHI GCTAGC 1 cut(s) 73
AvaII GGWCC 1 cut(s) 178
BbsI GAAGAC 2 cut(s) 281, 428
BbvCI CCTCAGC 1 cut(s) 444
BbvI GCAGC 3 cut(s) 78, 283, 379
BcoDI GTCTC 1 cut(s) 271
BfaI CTAG 1 cut(s) 74
BfmI CTRYAG 3 cut(s) 156, 297, 318
BglII AGATCT 1 cut(s) 141
BisI GCNGC 3 cut(s) 67, 297, 393
BlsI GCNGC 3 cut(s) 68, 298, 394
BmcAI AGTACT 1 cut(s) 316
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 2 cut(s) 26, 178
BmiI GGNNCC 1 cut(s) 28
BmrI ACTGGG 1 cut(s) 366
BmsI GCATC 2 cut(s) 25, 91
BmtI GCTAGC 1 cut(s) 77
BmuI ACTGGG 1 cut(s) 366
BpiI GAAGAC 2 cut(s) 281, 428
Bpu10I CCTNAGC 1 cut(s) 444
BsaI GGTCTC 1 cut(s) 271
BsaJI CCNNGG 1 cut(s) 222
BsaWI WCCGGW 1 cut(s) 374
Bse118I RCCGGY 2 cut(s) 212, 374
Bse1I ACTGG 1 cut(s) 361
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 3 cut(s) 61, 218, 256
BseMII CTCAG 3 cut(s) 230, 261, 435
BseNI ACTGG 1 cut(s) 361
BseXI GCAGC 3 cut(s) 78, 283, 379
BsgI GTGCAG 1 cut(s) 312
BshFI GGCC 1 cut(s) 27
BshTI ACCGGT 1 cut(s) 374
BsiSI CCGG 2 cut(s) 213, 375
BslFI GGGAC 1 cut(s) 373
BsmAI GTCTC 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 373
BsnI GGCC 1 cut(s) 27
Bso31I GGTCTC 1 cut(s) 271
Bsp143I GATC 2 cut(s) 141, 323
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 1 cut(s) 470
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 3 cut(s) 231, 262, 436
BspHI TCATGA 1 cut(s) 333
BspLI GGNNCC 1 cut(s) 28
BspMAI CTGCAG 2 cut(s) 301, 322
BspOI GCTAGC 1 cut(s) 77
BspPI GGATC 1 cut(s) 331
BspTNI GGTCTC 1 cut(s) 271
BsrFI RCCGGY 2 cut(s) 212, 374
BsrI ACTGG 1 cut(s) 361
BssAI RCCGGY 2 cut(s) 212, 374
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 2 cut(s) 141, 323
BssT1I CCWWGG 1 cut(s) 222
Bst4CI ACNGT 4 cut(s) 7, 166, 310, 344
BstAPI GCANNNNNTGC 1 cut(s) 326
BstC8I GCNNGC 3 cut(s) 71, 75, 214
BstDEI CTNAG 4 cut(s) 206, 239, 270, 444
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 3 cut(s) 61, 218, 256
BstKTI GATC 2 cut(s) 144, 326
BstMAI GTCTC 1 cut(s) 271
BstMBI GATC 2 cut(s) 141, 323
BstMWI GCNNNNNNNGC 5 cut(s) 167, 293, 326, 377, 401
BstNSI RCATGY 1 cut(s) 73
BstSFI CTRYAG 3 cut(s) 156, 297, 318
BstV1I GCAGC 3 cut(s) 78, 283, 379
BstV2I GAAGAC 2 cut(s) 281, 428
BstX2I RGATCY 2 cut(s) 141, 323
BstXI CCANNNNNNTGG 1 cut(s) 188
BstYI RGATCY 2 cut(s) 141, 323
BsuRI GGCC 1 cut(s) 27
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 3 cut(s) 61, 218, 256
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 3 cut(s) 71, 75, 214
CaiI CAGNNNCTG 1 cut(s) 326
CciI TCATGA 1 cut(s) 333
Cfr10I RCCGGY 2 cut(s) 212, 374
Cfr13I GGNCC 2 cut(s) 26, 178
Csp6I GTAC 1 cut(s) 315
CspAI ACCGGT 1 cut(s) 374
CviAII CATG 4 cut(s) 70, 223, 334, 366
CviJI RGCY 9 cut(s) 27, 122, 161, 192, 296, 371, 392, 417, 443
CviKI_1 RGCY 9 cut(s) 27, 122, 161, 192, 296, 371, 392, 417, 443
CviQI GTAC 1 cut(s) 315
DdeI CTNAG 4 cut(s) 206, 239, 270, 444
DpnI GATC 2 cut(s) 143, 325
DpnII GATC 2 cut(s) 141, 323
Eco130I CCWWGG 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 4 cut(s) 73, 226, 337, 369
FaiI YATR 7 cut(s) 71, 224, 289, 335, 350, 367, 384
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FaqI GGGAC 1 cut(s) 373
FatI CATG 4 cut(s) 69, 222, 333, 365
Fnu4HI GCNGC 3 cut(s) 67, 297, 393
FokI GGATG 3 cut(s) 68, 205, 263
Fsp4HI GCNGC 3 cut(s) 67, 297, 393
FspBI CTAG 1 cut(s) 74
GluI GCNGC 3 cut(s) 67, 297, 393
HaeIII GGCC 1 cut(s) 27
HapII CCGG 2 cut(s) 213, 375
Hin1II CATG 4 cut(s) 73, 226, 337, 369
HpaII CCGG 2 cut(s) 213, 375
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 2 cut(s) 44, 271
Hpy188III TCNNGA 1 cut(s) 334
Hpy8I GTNNAC 1 cut(s) 229
HpyCH4III ACNGT 4 cut(s) 7, 166, 310, 344
HpyCH4V TGCA 4 cut(s) 287, 299, 320, 329
HpyF10VI GCNNNNNNNGC 5 cut(s) 167, 293, 326, 377, 401
HpyF3I CTNAG 4 cut(s) 206, 239, 270, 444
Hsp92II CATG 4 cut(s) 73, 226, 337, 369
KroI GCCGGC 1 cut(s) 212
KroNI GCCGGC 1 cut(s) 214
Kzo9I GATC 2 cut(s) 141, 323
Lsp1109I GCAGC 3 cut(s) 78, 283, 379
LweI GCATC 2 cut(s) 25, 91
MaeI CTAG 1 cut(s) 74
MaeIII GTNAC 1 cut(s) 344
MalI GATC 2 cut(s) 143, 325
MboI GATC 2 cut(s) 141, 323
MboII GAAGA 3 cut(s) 286, 433, 461
MflI RGATCY 2 cut(s) 141, 323
MnlI CCTC 3 cut(s) 46, 234, 439
MroNI GCCGGC 1 cut(s) 212
MroXI GAANNNNTTC 1 cut(s) 258
MseI TTAA 2 cut(s) 9, 353
MslI CAYNNNNRTG 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 2 cut(s) 213, 375
MwoI GCNNNNNNNGC 5 cut(s) 167, 293, 326, 377, 401
NaeI GCCGGC 1 cut(s) 214
NcoI CCATGG 1 cut(s) 222
NdeII GATC 2 cut(s) 141, 323
NgoMIV GCCGGC 1 cut(s) 212
NheI GCTAGC 1 cut(s) 73
NlaIII CATG 4 cut(s) 73, 226, 337, 369
NlaIV GGNNCC 1 cut(s) 28
NspI RCATGY 1 cut(s) 73
PaeI GCATGC 1 cut(s) 73
PagI TCATGA 1 cut(s) 333
PdiI GCCGGC 1 cut(s) 214
PdmI GAANNNNTTC 1 cut(s) 258
PflFI GACNNNGTC 1 cut(s) 280
PinAI ACCGGT 1 cut(s) 374
PkrI GCNGC 3 cut(s) 68, 298, 394
PsiI TTATAA 1 cut(s) 384
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 2 cut(s) 26, 178
PstI CTGCAG 2 cut(s) 301, 322
PstNI CAGNNNCTG 1 cut(s) 326
PsuI RGATCY 2 cut(s) 141, 323
PsyI GACNNNGTC 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
RseI CAYNNNNRTG 1 cut(s) 221
SaqAI TTAA 2 cut(s) 9, 353
SatI GCNGC 3 cut(s) 67, 297, 393
Sau3AI GATC 2 cut(s) 141, 323
Sau96I GGNCC 2 cut(s) 26, 178
ScaI AGTACT 1 cut(s) 316
SetI ASST 4 cut(s) 267, 298, 438, 445
SfaNI GCATC 2 cut(s) 25, 91
SfcI CTRYAG 3 cut(s) 156, 297, 318
SinI GGWCC 1 cut(s) 178
SmiMI CAYNNNNRTG 1 cut(s) 221
SphI GCATGC 1 cut(s) 73
SsiI CCGC 1 cut(s) 470
SspMI CTAG 1 cut(s) 74
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 4 cut(s) 7, 166, 310, 344
TatI WGTACW 1 cut(s) 314
Tru1I TTAA 2 cut(s) 9, 353
Tru9I TTAA 2 cut(s) 9, 353
TscAI CASTG 1 cut(s) 157
TseI GCWGC 3 cut(s) 66, 296, 392
TspDTI ATGAA 3 cut(s) 76, 267, 423
TspRI CASTG 1 cut(s) 157
Tth111I GACNNNGTC 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 178
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 258
XspI CTAG 1 cut(s) 74
ZrmI AGTACT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.