Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000317.1

Orthogroup ID

OG0003548

Physical Location & Seq

Genomic Coordinates Forward (+)

117 .. 4694

Gene Structure 4578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000317.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

atgtcggtaaacaccatcaaggtcagcaacctttccttgggtgcaagtgagagagacatcaaggagttcttttccttttctggcgatatcgcatatgtggaaatgcagagtgacactgagcggtcccaaattgcatatgttaccttcaaggatctacaaggagcagagactgctgtgcttctttcgggagctacaatagtcgatatgtctgtaaccataactctcgctccagaatacaagttgccaccttctgcaatagcaccttctgtaactgataaagcccctggtggtgctgaatctgcatttcggaaggcagaggatgttgttagcggcatgcttgctaagggatttatcttggggaaagatgcagtcaacaaggcaaagggctttgatgagaaacaccagttgacctcaacagcttcagaaaaggttgcttcttttgacaaaaagatagggcttactgagaaaataagtgttggtacttctgtggtgagtgaaaaagttcgtgaagtggatcagaaattccaggtctctgagaagaccaagtcagcttttgctgctgccgagcagacagttagcaatgctggatctgccattatgaagaaccgatatgtgtttacttcggctgcatgggtttcgggtgctttcaacaaggttgcaaaggcagctggtgatgttggtcagaagacaaaagaaaaagttgaaatggtggaagaggaaaagaacagaaaaattgaggatgactatgctcaagttctgtccgagtctccaaaagcatctggaccaagtgggcatgaacctgttaaagtaatgaaatggcgtctaagctcgcagccgcccttgccattcaagttggagggtaacgttgtggatctcgatgcaaggtcagaggctgaagctgatgttttcttggttaccaagttctccaccactcttaatcccatcccgaccaataagttcatgtccaccatttggtccatcattgggaagttctcggttcaagaaagcctcaatgataggttcttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

342

Amino Acids

37.02

Weight (kDa)

5.95

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17720 AT5G46870 AT5G46870
fragaria_vesca	FvH4_5g22870 FvH4_7g34070 FvH4_7g34070 FvH4_7g34070
malus_domestica	MD01G1236900.v1.1 MD06G1025100.v1.1 MD06G1025200.v1.1 MD07G1309500.v1.1
prunus_persica	Prupe.2G327200_v2.0.a1 Prupe.5G029900_v2.0.a1
pyrus_communis	pycom07g28150
rosa_chinensis	RchiOBHm_Chr1g0384341 RchiOBHm_Chr7g0211571
rosa_laevigata	RLG00000002998 RLG00000026047
rosa_multiflora	Rmu_co8225890.1_g000001 Rmu_sc0016737.1_g000005 Rmu_ssc0000317.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247740 Rroxscaffold_4G00276760
rosa_rugosa	Rorug01G0447000 Rorug07G0126000
rosa_samantha	Rh1AG472300 Rh1BG430100 Rh1CG443000 Rh1DG462700 Rh7AG258300 Rh7BG252500 Rh7CG275400 Rh7DG265800
rosa_wichuraiana	Rw1G040030 Rw7G022090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	972
AccBSI	CCGCTC	1 cut(s)	121
AciI	CCGC	3 cut(s)	121, 330, 836
AclI	AACGTT	1 cut(s)	864
AclWI	GGATC	4 cut(s)	159, 522, 595, 879
AcsI	RAATTY	1 cut(s)	521
AcuI	CTGAAG	2 cut(s)	405, 915
AcyI	GRCGYC	1 cut(s)	820
AfaI	GTAC	1 cut(s)	481
AfiI	CCNNNNNNNGG	3 cut(s)	37, 972, 984
AgsI	TTSAA	5 cut(s)	148, 649, 704, 850, 1001
AjnI	CCWGG	2 cut(s)	283, 525
AluBI	AGCT	6 cut(s)	191, 419, 551, 668, 828, 899
AluI	AGCT	6 cut(s)	191, 419, 551, 668, 828, 899
Alw26I	GTCTC	4 cut(s)	48, 161, 535, 771
AlwI	GGATC	4 cut(s)	159, 522, 595, 879
AlwNI	CAGNNNCTG	2 cut(s)	170, 893
ApeKI	GCWGC	5 cut(s)	557, 560, 626, 665, 832
ApoI	RAATTY	1 cut(s)	521
Asp700I	GAANNNNTTC	1 cut(s)	501
AspS9I	GGNCC	3 cut(s)	123, 782, 975
AsuHPI	GGTGA	2 cut(s)	502, 683
AvaII	GGWCC	3 cut(s)	123, 782, 975
BaeI	ACNNNNGTAYC	2 cut(s)	471, 504
BbsI	GAAGAC	2 cut(s)	545, 692
BbvI	GCAGC	5 cut(s)	544, 547, 613, 677, 844
BccI	CCATC	3 cut(s)	23, 950, 986
BcgI	CGANNNNNNTGC	2 cut(s)	618, 652
BciT130I	CCWGG	2 cut(s)	285, 527
BcoDI	GTCTC	4 cut(s)	48, 161, 535, 771
BisI	GCNGC	7 cut(s)	331, 558, 561, 627, 666, 833, 836
BlsI	GCNGC	7 cut(s)	332, 559, 562, 628, 667, 834, 837
Bme1390I	CCNGG	2 cut(s)	285, 527
Bme18I	GGWCC	3 cut(s)	123, 782, 975
BmgT120I	GGNCC	3 cut(s)	123, 782, 975
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	2 cut(s)	285, 527
BmsI	GCATC	3 cut(s)	355, 785, 868
BpiI	GAAGAC	2 cut(s)	545, 692
BpmI	CTGGAG	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	735
BsaHI	GRCGYC	1 cut(s)	820
BsaI	GGTCTC	1 cut(s)	535
BsaJI	CCNNGG	2 cut(s)	36, 283
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 972, 984
Bse1I	ACTGG	1 cut(s)	403
Bse3DI	GCAATG	1 cut(s)	586
BseBI	CCWGG	2 cut(s)	285, 527
BseDI	CCNNGG	2 cut(s)	36, 283
BseGI	GGATG	3 cut(s)	325, 745, 942
BseLI	CCNNNNNNNGG	3 cut(s)	37, 972, 984
BseMI	GCAATG	1 cut(s)	586
BseMII	CTCAG	3 cut(s)	108, 453, 525
BseNI	ACTGG	1 cut(s)	403
BseXI	GCAGC	5 cut(s)	544, 547, 613, 677, 844
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	3 cut(s)	37, 972, 984
BsmAI	GTCTC	4 cut(s)	48, 161, 535, 771
BsmFI	GGGAC	1 cut(s)	109
Bso31I	GGTCTC	1 cut(s)	535
Bsp143I	GATC	4 cut(s)	151, 514, 587, 871
BspACI	CCGC	3 cut(s)	121, 330, 836
BspCNI	CTCAG	3 cut(s)	109, 454, 526
BspLI	GGNNCC	1 cut(s)	125
BspPI	GGATC	4 cut(s)	159, 522, 595, 879
BspTNI	GGTCTC	1 cut(s)	535
BsrBI	CCGCTC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	586
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	2 cut(s)	36, 283
BssMI	GATC	4 cut(s)	151, 514, 587, 871
BssNI	GRCGYC	1 cut(s)	820
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	2 cut(s)	285, 527
Bst4CI	ACNGT	1 cut(s)	574
Bst6I	CTCTTC	1 cut(s)	708
BstACI	GRCGYC	1 cut(s)	820
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	3 cut(s)	335, 339, 830
BstDEI	CTNAG	5 cut(s)	117, 342, 462, 534, 824
BstEII	GGTNACC	1 cut(s)	913
BstF5I	GGATG	3 cut(s)	325, 745, 942
BstKTI	GATC	4 cut(s)	154, 517, 590, 874
BstMAI	GTCTC	4 cut(s)	48, 161, 535, 771
BstMBI	GATC	4 cut(s)	151, 514, 587, 871
BstMWI	GCNNNNNNNGC	6 cut(s)	170, 299, 557, 590, 665, 841
BstNI	CCWGG	2 cut(s)	285, 527
BstNSI	RCATGY	1 cut(s)	337
BstPI	GGTNACC	1 cut(s)	913
BstSCI	CCNGG	2 cut(s)	283, 525
BstV1I	GCAGC	5 cut(s)	544, 547, 613, 677, 844
BstV2I	GAAGAC	2 cut(s)	545, 692
BstX2I	RGATCY	3 cut(s)	151, 587, 871
BstYI	RGATCY	3 cut(s)	151, 587, 871
BtsCI	GGATG	3 cut(s)	325, 745, 942
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	3 cut(s)	335, 339, 830
CaiI	CAGNNNCTG	2 cut(s)	170, 893
Cfr13I	GGNCC	3 cut(s)	123, 782, 975
CseI	GACGC	1 cut(s)	809
Csp6I	GTAC	1 cut(s)	480
CviAII	CATG	4 cut(s)	334, 630, 794, 961
CviQI	GTAC	1 cut(s)	480
DdeI	CTNAG	5 cut(s)	117, 342, 462, 534, 824
DpnI	GATC	4 cut(s)	153, 516, 589, 873
DpnII	GATC	4 cut(s)	151, 514, 587, 871
Eam1104I	CTCTTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	708
Eco130I	CCWWGG	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	535
Eco32I	GATATC	1 cut(s)	88
Eco47I	GGWCC	3 cut(s)	123, 782, 975
Eco57I	CTGAAG	2 cut(s)	405, 915
Eco91I	GGTNACC	1 cut(s)	913
EcoO65I	GGTNACC	1 cut(s)	913
EcoRII	CCWGG	2 cut(s)	283, 525
EcoRV	GATATC	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	4 cut(s)	337, 633, 797, 964
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	4 cut(s)	333, 629, 793, 960
FauNDI	CATATG	2 cut(s)	94, 136
Fnu4HI	GCNGC	7 cut(s)	331, 558, 561, 627, 666, 833, 836
FokI	GGATG	3 cut(s)	332, 752, 929
Fsp4HI	GCNGC	7 cut(s)	331, 558, 561, 627, 666, 833, 836
GluI	GCNGC	7 cut(s)	331, 558, 561, 627, 666, 833, 836
GsuI	CTGGAG	1 cut(s)	213
HgaI	GACGC	1 cut(s)	809
Hin1I	GRCGYC	1 cut(s)	820
Hin1II	CATG	4 cut(s)	337, 633, 797, 964
HincII	GTYRAC	2 cut(s)	373, 408
HindII	GTYRAC	2 cut(s)	373, 408
HinfI	GANTC	2 cut(s)	296, 764
HphI	GGTGA	2 cut(s)	502, 683
Hpy166II	GTNNAC	5 cut(s)	10, 373, 408, 618, 966
Hpy188I	TCNGA	7 cut(s)	309, 424, 519, 535, 684, 763, 889
Hpy188III	TCNNGA	7 cut(s)	186, 230, 506, 780, 875, 946, 1001
Hpy8I	GTNNAC	5 cut(s)	10, 373, 408, 618, 966
HpyAV	CCTTC	4 cut(s)	154, 258, 273, 304
HpyCH4III	ACNGT	1 cut(s)	574
HpyCH4IV	ACGT	1 cut(s)	864
HpyCH4V	TGCA	9 cut(s)	44, 106, 134, 254, 302, 368, 629, 659, 881
HpyF10VI	GCNNNNNNNGC	6 cut(s)	170, 299, 557, 590, 665, 841
HpyF3I	CTNAG	5 cut(s)	117, 342, 462, 534, 824
HpySE526I	ACGT	1 cut(s)	864
Hsp92I	GRCGYC	1 cut(s)	820
Hsp92II	CATG	4 cut(s)	337, 633, 797, 964
Kzo9I	GATC	4 cut(s)	151, 514, 587, 871
LmnI	GCTCC	3 cut(s)	161, 188, 232
Lsp1109I	GCAGC	5 cut(s)	544, 547, 613, 677, 844
LweI	GCATC	3 cut(s)	355, 785, 868
MaeII	ACGT	1 cut(s)	864
MaeIII	GTNAC	6 cut(s)	110, 139, 211, 268, 860, 913
MalI	GATC	4 cut(s)	153, 516, 589, 873
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	4 cut(s)	151, 514, 587, 871
MboII	GAAGA	4 cut(s)	550, 613, 697, 725
MflI	RGATCY	3 cut(s)	151, 587, 871
MluCI	AATT	3 cut(s)	129, 521, 732
MlyI	GAGTC	1 cut(s)	773
MmeI	TCCRAC	1 cut(s)	834
MnlI	CCTC	7 cut(s)	310, 421, 709, 730, 850, 883, 1019
MroXI	GAANNNNTTC	1 cut(s)	501
MseI	TTAA	2 cut(s)	804, 936
MspA1I	CMGCKG	1 cut(s)	668
MspR9I	CCNGG	2 cut(s)	285, 527
MvaI	CCWGG	2 cut(s)	285, 527
MwoI	GCNNNNNNNGC	6 cut(s)	170, 299, 557, 590, 665, 841
NdeI	CATATG	2 cut(s)	94, 136
NdeII	GATC	4 cut(s)	151, 514, 587, 871
NlaIII	CATG	4 cut(s)	337, 633, 797, 964
NlaIV	GGNNCC	1 cut(s)	125
NmeAIII	GCCGAG	1 cut(s)	589
NmuCI	GTSAC	1 cut(s)	110
NspI	RCATGY	1 cut(s)	337
PaeI	GCATGC	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	1 cut(s)	296
PflFI	GACNNNGTC	1 cut(s)	544
PflMI	CCANNNNNTGG	1 cut(s)	972
PkrI	GCNGC	7 cut(s)	332, 559, 562, 628, 667, 834, 837
PleI	GAGTC	1 cut(s)	772
PpsI	GAGTC	1 cut(s)	772
Psp1406I	AACGTT	1 cut(s)	864
Psp6I	CCWGG	2 cut(s)	283, 525
PspEI	GGTNACC	1 cut(s)	913
PspGI	CCWGG	2 cut(s)	283, 525
PspN4I	GGNNCC	1 cut(s)	125
PspPI	GGNCC	3 cut(s)	123, 782, 975
PstNI	CAGNNNCTG	2 cut(s)	170, 893
PsuI	RGATCY	3 cut(s)	151, 587, 871
PsyI	GACNNNGTC	1 cut(s)	544
PvuII	CAGCTG	1 cut(s)	668
RsaI	GTAC	1 cut(s)	481
RsaNI	GTAC	1 cut(s)	480
SaqAI	TTAA	2 cut(s)	804, 936
SatI	GCNGC	7 cut(s)	331, 558, 561, 627, 666, 833, 836
Sau3AI	GATC	4 cut(s)	151, 514, 587, 871
Sau96I	GGNCC	3 cut(s)	123, 782, 975
SchI	GAGTC	1 cut(s)	773
ScrFI	CCNGG	2 cut(s)	285, 527
SfaNI	GCATC	3 cut(s)	355, 785, 868
SinI	GGWCC	3 cut(s)	123, 782, 975
SmlI	CTYRAG	1 cut(s)	750
SmoI	CTYRAG	1 cut(s)	750
SphI	GCATGC	1 cut(s)	337
Sse9I	AATT	3 cut(s)	129, 521, 732
SsiI	CCGC	3 cut(s)	121, 330, 836
StyD4I	CCNGG	2 cut(s)	283, 525
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	574
TaiI	ACGT	1 cut(s)	867
TaqI	TCGA	2 cut(s)	201, 876
TasI	AATT	3 cut(s)	129, 521, 732
TauI	GCSGC	2 cut(s)	333, 838
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	2 cut(s)	804, 936
Tru9I	TTAA	2 cut(s)	804, 936
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	5 cut(s)	557, 560, 626, 665, 832
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	4 cut(s)	614, 810, 827, 949
TspRI	CASTG	1 cut(s)	121
Tth111I	GACNNNGTC	1 cut(s)	544
Van91I	CCANNNNNTGG	1 cut(s)	972
VpaK11BI	GGWCC	3 cut(s)	123, 782, 975
XapI	RAATTY	1 cut(s)	521
XceI	RCATGY	1 cut(s)	337
XmnI	GAANNNNTTC	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.