Rroxscaffold_4G00276760

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003548
Physical Location & Seq
Forward (+)
244848 .. 247247
2400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00276760.1

Sequence Viewer

Length: 1017 bp
ATGGAGGAGGTAAGGACAGTGAAAATTAACAATGTCTCCCTCAGCGCAACGGACCATGATCTAAGAGATTTCTTTTCCTTCTCCGGTGAAGTTGAATATGTGGAACTACATAGTTACAATGAGACGTCTCAGGTTGCATATGTTACCTTCAAGGATGCCAGTGGAGCAGACACATCAATCCTCCTTTCGGGAGCGACTATAGTTGATCGACCTGTTACCATAGATATGGCTGCAGATTACAAGCTGCCAGCTGCTGTGGCATCAACACTTCCAGCCGCAACAGTTAATGTAAATGCTGGTGGCCCCAAAGATGCTGTCCGAAAGGCAGAGGATGTTGTGAGCAGCATGCTAGCAAAAGGGTTCATTTTGGGAAAAGATGCTATTAGCAAGGCAAAAGCCTTTGATGAGAAACACCAGATCTATTCCACTGCTACAGCCACAGTTGCTACATTGGACCAAAAGATTGGTTTTAGTGAGAAACTTAGTGCCGGCACATCCATGGTAAACGATAAACTGAGGCAAATGGATGAAAAGTTTCAGGTCTCTGAGAAGACAAAGTCTGCATATTCAGCTGCAGGGCAAACGGTCAGTACTGCAGGATCTGCACTCATGAGCAACCGTTACATATTAACTGGGACAGCATGGGCTACCGGTGCTTATAATAGGGCTGCCCAGACAGCAAATGAAGTGAGCCAGAAGACAAAGGAAAAGGTTTTAGCTGAGGAAGATAAAAATGGCAATAAAGCGGAAGGCAGTCCAGGGGAAGGCAGTCAAGCGGAAGGCAGTCAAGTGGAAGGCAGTCAAGCGGAAGGCACTAAAGCGGAAGGCAGTAAAGCAGAAGGCAATCAAGCGGAAGGCAGTCAAGCGGATGACAGTCAAGCAGATGGCAATAAAGCGGAAGGCAGTCAAGCGGGAGGCAATAAAGCAGAAGGCAATAGAGCAGAAGGTAGTCAAGCTGAAGGCAATAAAGCGGATAACAGTAAAGCGGAATGCAATAAAGTGGAAGGCGCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

338

Amino Acids

35.23

Weight (kDa)

4.89

Isoelectric Point (pI)

23.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 8 - 71 2.6e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 660
AatII GACGTC 1 cut(s) 128
AclWI GGATC 1 cut(s) 607
AcuI CTGAAG 1 cut(s) 978
AcyI GRCGYC 1 cut(s) 125
AfaI GTAC 1 cut(s) 592
AfiI CCNNNNNNNGG 2 cut(s) 187, 764
AgeI ACCGGT 1 cut(s) 650
AgsI TTSAA 2 cut(s) 95, 151
AjnI CCWGG 1 cut(s) 757
AluBI AGCT 5 cut(s) 244, 251, 572, 719, 956
AluI AGCT 5 cut(s) 244, 251, 572, 719, 956
Alw26I GTCTC 4 cut(s) 40, 116, 132, 547
AlwI GGATC 1 cut(s) 607
AlwNI CAGNNNCTG 2 cut(s) 254, 602
AoxI GGCC 1 cut(s) 301
ApeKI GCWGC 6 cut(s) 230, 244, 251, 342, 572, 668
ArsI GACNNNNNNTTYG 2 cut(s) 300, 332
AsiGI ACCGGT 1 cut(s) 650
Asp700I GAANNNNTTC 1 cut(s) 534
AspLEI GCGC 2 cut(s) 47, 1010
AspS9I GGNCC 3 cut(s) 52, 302, 454
AsuHPI GGTGA 1 cut(s) 98
AsuNHI GCTAGC 1 cut(s) 349
AvaII GGWCC 2 cut(s) 52, 454
BbsI GAAGAC 2 cut(s) 557, 704
BbvCI CCTCAGC 2 cut(s) 41, 720
BbvI GCAGC 6 cut(s) 217, 231, 238, 354, 559, 655
BccI CCATC 1 cut(s) 878
BciT130I CCWGG 1 cut(s) 759
BcoDI GTCTC 4 cut(s) 40, 116, 132, 547
BfaI CTAG 1 cut(s) 350
BfmI CTRYAG 5 cut(s) 198, 231, 432, 573, 594
BfoI RGCGCY 1 cut(s) 1011
BglII AGATCT 1 cut(s) 417
BisI GCNGC 7 cut(s) 231, 245, 252, 276, 343, 573, 669
BlsI GCNGC 7 cut(s) 232, 246, 253, 277, 344, 574, 670
BmcAI AGTACT 1 cut(s) 592
Bme1390I CCNGG 1 cut(s) 759
Bme18I GGWCC 2 cut(s) 52, 454
BmgT120I GGNCC 3 cut(s) 52, 302, 454
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 1 cut(s) 759
BmrI ACTGGG 1 cut(s) 642
BmsI GCATC 4 cut(s) 145, 269, 301, 367
BmtI GCTAGC 1 cut(s) 353
BmuI ACTGGG 1 cut(s) 642
BpiI GAAGAC 2 cut(s) 557, 704
Bpu10I CCTNAGC 2 cut(s) 41, 720
BsaHI GRCGYC 1 cut(s) 125
BsaI GGTCTC 1 cut(s) 547
BsaJI CCNNGG 2 cut(s) 498, 758
BsaWI WCCGGW 2 cut(s) 83, 650
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 764
Bse118I RCCGGY 2 cut(s) 488, 650
Bse1I ACTGG 2 cut(s) 159, 637
BseBI CCWGG 1 cut(s) 759
BseDI CCNNGG 2 cut(s) 498, 758
BseGI GGATG 5 cut(s) 160, 337, 494, 532, 874
BseLI CCNNNNNNNGG 2 cut(s) 187, 764
BseMII CTCAG 5 cut(s) 55, 143, 506, 537, 711
BseNI ACTGG 2 cut(s) 159, 637
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 6 cut(s) 217, 231, 238, 354, 559, 655
BsgI GTGCAG 1 cut(s) 588
BshFI GGCC 1 cut(s) 303
BshTI ACCGGT 1 cut(s) 650
BsiSI CCGG 3 cut(s) 84, 489, 651
BslFI GGGAC 1 cut(s) 649
BslI CCNNNNNNNGG 2 cut(s) 187, 764
BsmAI GTCTC 4 cut(s) 40, 116, 132, 547
BsmBI CGTCTC 2 cut(s) 116, 132
BsmFI GGGAC 1 cut(s) 649
BsmI GAATGC 1 cut(s) 995
BsnI GGCC 1 cut(s) 303
Bso31I GGTCTC 1 cut(s) 547
Bsp143I GATC 4 cut(s) 58, 205, 417, 599
Bsp19I CCATGG 1 cut(s) 498
BspANI GGCC 1 cut(s) 303
BspCNI CTCAG 5 cut(s) 54, 142, 507, 538, 712
BspHI TCATGA 1 cut(s) 609
BspLI GGNNCC 1 cut(s) 304
BspMAI CTGCAG 3 cut(s) 235, 577, 598
BspOI GCTAGC 1 cut(s) 353
BspPI GGATC 1 cut(s) 607
BspTNI GGTCTC 1 cut(s) 547
BsrFI RCCGGY 2 cut(s) 488, 650
BsrI ACTGG 2 cut(s) 159, 637
BssAI RCCGGY 2 cut(s) 488, 650
BssECI CCNNGG 2 cut(s) 498, 758
BssMI GATC 4 cut(s) 58, 205, 417, 599
BssNI GRCGYC 1 cut(s) 125
BssT1I CCWWGG 1 cut(s) 498
Bst2UI CCWGG 1 cut(s) 759
Bst4CI ACNGT 7 cut(s) 19, 283, 442, 586, 620, 875, 980
BstACI GRCGYC 1 cut(s) 125
BstAPI GCANNNNNTGC 1 cut(s) 602
BstC8I GCNNGC 4 cut(s) 249, 347, 351, 490
BstDEI CTNAG 8 cut(s) 41, 62, 129, 482, 515, 546, 720, 1014
BstDSI CCRYGG 1 cut(s) 498
BstF5I GGATG 5 cut(s) 160, 337, 494, 532, 874
BstH2I RGCGCY 1 cut(s) 1011
BstHHI GCGC 2 cut(s) 47, 1010
BstKTI GATC 4 cut(s) 61, 208, 420, 602
BstMAI GTCTC 4 cut(s) 40, 116, 132, 547
BstMBI GATC 4 cut(s) 58, 205, 417, 599
BstMWI GCNNNNNNNGC 7 cut(s) 164, 257, 443, 569, 602, 653, 677
BstNI CCWGG 1 cut(s) 759
BstNSI RCATGY 1 cut(s) 349
BstSCI CCNGG 1 cut(s) 757
BstSFI CTRYAG 5 cut(s) 198, 231, 432, 573, 594
BstV1I GCAGC 6 cut(s) 217, 231, 238, 354, 559, 655
BstV2I GAAGAC 2 cut(s) 557, 704
BstX2I RGATCY 2 cut(s) 417, 599
BstXI CCANNNNNNTGG 2 cut(s) 226, 464
BstYI RGATCY 2 cut(s) 417, 599
BsuRI GGCC 1 cut(s) 303
BtgI CCRYGG 1 cut(s) 498
BtsCI GGATG 5 cut(s) 160, 337, 494, 532, 874
BtsI GCAGTG 1 cut(s) 426
BtsIMutI CAGTG 3 cut(s) 24, 166, 426
Cac8I GCNNGC 4 cut(s) 249, 347, 351, 490
CaiI CAGNNNCTG 2 cut(s) 254, 602
CciI TCATGA 1 cut(s) 609
CfoI GCGC 2 cut(s) 47, 1010
Cfr10I RCCGGY 2 cut(s) 488, 650
Cfr13I GGNCC 3 cut(s) 52, 302, 454
Csp6I GTAC 1 cut(s) 591
CspAI ACCGGT 1 cut(s) 650
CviAII CATG 5 cut(s) 56, 346, 499, 610, 642
CviQI GTAC 1 cut(s) 591
DdeI CTNAG 8 cut(s) 41, 62, 129, 482, 515, 546, 720, 1014
DpnI GATC 4 cut(s) 60, 207, 419, 601
DpnII GATC 4 cut(s) 58, 205, 417, 599
Eco130I CCWWGG 1 cut(s) 498
Eco31I GGTCTC 1 cut(s) 547
Eco47I GGWCC 2 cut(s) 52, 454
Eco57I CTGAAG 1 cut(s) 978
EcoRII CCWGG 1 cut(s) 757
EcoT14I CCWWGG 1 cut(s) 498
ErhI CCWWGG 1 cut(s) 498
Esp3I CGTCTC 2 cut(s) 116, 132
FaeI CATG 5 cut(s) 59, 349, 502, 613, 645
FaqI GGGAC 1 cut(s) 649
FatI CATG 5 cut(s) 55, 345, 498, 609, 641
FauI CCCGC 1 cut(s) 904
FauNDI CATATG 1 cut(s) 139
Fnu4HI GCNGC 7 cut(s) 231, 245, 252, 276, 343, 573, 669
FokI GGATG 5 cut(s) 167, 344, 481, 539, 881
Fsp4HI GCNGC 7 cut(s) 231, 245, 252, 276, 343, 573, 669
FspBI CTAG 1 cut(s) 350
GlaI GCGC 2 cut(s) 46, 1009
GluI GCNGC 7 cut(s) 231, 245, 252, 276, 343, 573, 669
HaeII RGCGCY 1 cut(s) 1011
HaeIII GGCC 1 cut(s) 303
HapII CCGG 3 cut(s) 84, 489, 651
HhaI GCGC 2 cut(s) 47, 1010
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 5 cut(s) 59, 349, 502, 613, 645
Hin6I GCGC 2 cut(s) 45, 1008
HinP1I GCGC 2 cut(s) 45, 1008
HpaII CCGG 3 cut(s) 84, 489, 651
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 505
Hpy188I TCNGA 2 cut(s) 320, 547
Hpy188III TCNNGA 2 cut(s) 189, 610
Hpy8I GTNNAC 1 cut(s) 505
HpyCH4III ACNGT 7 cut(s) 19, 283, 442, 586, 620, 875, 980
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 7 cut(s) 137, 233, 563, 575, 596, 605, 993
HpyF10VI GCNNNNNNNGC 7 cut(s) 164, 257, 443, 569, 602, 653, 677
HpyF3I CTNAG 8 cut(s) 41, 62, 129, 482, 515, 546, 720, 1014
HpySE526I ACGT 1 cut(s) 125
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 5 cut(s) 59, 349, 502, 613, 645
HspAI GCGC 2 cut(s) 45, 1008
KroI GCCGGC 1 cut(s) 488
KroNI GCCGGC 1 cut(s) 490
Kzo9I GATC 4 cut(s) 58, 205, 417, 599
LmnI GCTCC 2 cut(s) 164, 191
Lsp1109I GCAGC 6 cut(s) 217, 231, 238, 354, 559, 655
LweI GCATC 4 cut(s) 145, 269, 301, 367
MaeI CTAG 1 cut(s) 350
MaeII ACGT 1 cut(s) 125
MaeIII GTNAC 4 cut(s) 113, 142, 214, 620
MalI GATC 4 cut(s) 60, 207, 419, 601
MboI GATC 4 cut(s) 58, 205, 417, 599
MboII GAAGA 3 cut(s) 562, 709, 737
MflI RGATCY 2 cut(s) 417, 599
MluCI AATT 1 cut(s) 24
MnlI CCTC 6 cut(s) 50, 191, 322, 510, 715, 908
MroNI GCCGGC 1 cut(s) 488
MroXI GAANNNNTTC 1 cut(s) 534
MseI TTAA 3 cut(s) 27, 285, 629
MslI CAYNNNNRTG 2 cut(s) 224, 497
MspA1I CMGCKG 2 cut(s) 251, 572
MspI CCGG 3 cut(s) 84, 489, 651
MspR9I CCNGG 1 cut(s) 759
Mva1269I GAATGC 1 cut(s) 995
MvaI CCWGG 1 cut(s) 759
MwoI GCNNNNNNNGC 7 cut(s) 164, 257, 443, 569, 602, 653, 677
NaeI GCCGGC 1 cut(s) 490
NcoI CCATGG 1 cut(s) 498
NdeI CATATG 1 cut(s) 139
NdeII GATC 4 cut(s) 58, 205, 417, 599
NgoMIV GCCGGC 1 cut(s) 488
NheI GCTAGC 1 cut(s) 349
NlaIII CATG 5 cut(s) 59, 349, 502, 613, 645
NlaIV GGNNCC 1 cut(s) 304
NspI RCATGY 1 cut(s) 349
PaeI GCATGC 1 cut(s) 349
PagI TCATGA 1 cut(s) 609
PctI GAATGC 1 cut(s) 995
PdiI GCCGGC 1 cut(s) 490
PdmI GAANNNNTTC 1 cut(s) 534
PflFI GACNNNGTC 1 cut(s) 556
PinAI ACCGGT 1 cut(s) 650
PkrI GCNGC 7 cut(s) 232, 246, 253, 277, 344, 574, 670
PsiI TTATAA 1 cut(s) 660
Psp6I CCWGG 1 cut(s) 757
PspGI CCWGG 1 cut(s) 757
PspN4I GGNNCC 1 cut(s) 304
PspPI GGNCC 3 cut(s) 52, 302, 454
PstI CTGCAG 3 cut(s) 235, 577, 598
PstNI CAGNNNCTG 2 cut(s) 254, 602
PsuI RGATCY 2 cut(s) 417, 599
PsyI GACNNNGTC 1 cut(s) 556
PvuII CAGCTG 2 cut(s) 251, 572
RsaI GTAC 1 cut(s) 592
RsaNI GTAC 1 cut(s) 591
RseI CAYNNNNRTG 2 cut(s) 224, 497
SaqAI TTAA 3 cut(s) 27, 285, 629
SatI GCNGC 7 cut(s) 231, 245, 252, 276, 343, 573, 669
Sau3AI GATC 4 cut(s) 58, 205, 417, 599
Sau96I GGNCC 3 cut(s) 52, 302, 454
ScaI AGTACT 1 cut(s) 592
ScrFI CCNGG 1 cut(s) 759
SfaNI GCATC 4 cut(s) 145, 269, 301, 367
SfcI CTRYAG 5 cut(s) 198, 231, 432, 573, 594
SinI GGWCC 2 cut(s) 52, 454
SmiMI CAYNNNNRTG 2 cut(s) 224, 497
SphI GCATGC 1 cut(s) 349
Sse9I AATT 1 cut(s) 24
SspMI CTAG 1 cut(s) 350
StyD4I CCNGG 1 cut(s) 757
StyI CCWWGG 1 cut(s) 498
TaaI ACNGT 7 cut(s) 19, 283, 442, 586, 620, 875, 980
TaiI ACGT 1 cut(s) 128
TaqI TCGA 1 cut(s) 208
TasI AATT 1 cut(s) 24
TatI WGTACW 1 cut(s) 590
TauI GCSGC 1 cut(s) 278
Tru1I TTAA 3 cut(s) 27, 285, 629
Tru9I TTAA 3 cut(s) 27, 285, 629
TscAI CASTG 3 cut(s) 24, 166, 433
TseI GCWGC 6 cut(s) 230, 244, 251, 342, 572, 668
TspDTI ATGAA 3 cut(s) 352, 543, 699
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 3 cut(s) 24, 166, 433
Tth111I GACNNNGTC 1 cut(s) 556
VpaK11BI GGWCC 2 cut(s) 52, 454
XceI RCATGY 1 cut(s) 349
XmnI GAANNNNTTC 1 cut(s) 534
XspI CTAG 1 cut(s) 350
ZraI GACGTC 1 cut(s) 126
ZrmI AGTACT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.