Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0016530

Physical Location & Seq

Genomic Coordinates Forward (+)

24080219 .. 24083001

Gene Structure 2783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g34071.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAGTTTTCGGGATCTGGAGTCTGGTCTGCCTTCGGCGCAGCAACAAAGACAATCCCTTTACTTGAAGAATTCGAATTCGAATTCCAAGTCGAATTATTATGAGAAGAACAAGGAGGAGGCGGAGCAGGAGCCGTCGCGGGCGGTGGCCGCTGGGATATTCCAATATCAAACCGCCGTCGCCTCCTTTTACCGCCTCGTCAATTCCCTCGGCACACCTAAAGACACCCTTCTACTCCGTGATAACCTGCATAAGACAAGGACACATATTCAGCAGTTGGGGAAAGACATCCATGCTAAACTTAGGGAAGCTAGTGACATTGATCACAATGCCCAAGTTAGCGTTGTGAAGAAGATTGCTGATGCTAAGCTGACAAAGAATTTCCAGGCGGCTCTTAAAGATTTTCAGAAAGCTCAGAGGCTTGCTGCTGAAAGGGAGACCTCATATGCTCCTTTTGTTCCCAAACAACATGTCCCTTCCAGTTATTCTCCCCAAGAACAAGAGATGAGTTCAGCCAGGAGTTCCCAGCAGCAAGCACTAGTTCTAGAAGAAAGACAAGAAGTTTTGCTATCAGATAATGAGATTGCATTCAATGAAGCCATTATTGAGGAAAGGGAGCAAGGGATCCAAGAAATTCAGCAACAGATCAGTGAGGTTAATGAGATTTTCAAAGATCTAGCTGTCCTAGTTCAAGATCAAGGAGCTCTAATTGATGATTTTAGTTCCAACATTGAAAACTCTCATTCTGCAACTGCACAAGCAGCTTCCCAACTTTTGAAAGCATCCAAGCTCCAAAAATCAAATTCATCCCTGACCTGTTTGCTGCTGGTGATATTCGGAATAATCCTCATGATTGTCATTATAGTTGTTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin_2

Protein Analysis

293

Amino Acids

32.63

Weight (kDa)

5.76

Isoelectric Point (pI)

55.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin_2	PF14523	47 - 178	3.8e-29	Syntaxin-like protein
SNARE	PF05739	236 - 287	2.1e-14	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16830
fragaria_vesca	FvH4_7g34071
malus_domestica	MD01G1237000.v1.1 MD07G1309600.v1.1
prunus_persica	Prupe.2G327300_v2.0.a1
pyrus_communis	pycom01g24480 pycom07g28160
rosa_chinensis	RchiOBHm_Chr1g0384351
rosa_laevigata	RLG00000026046
rosa_multiflora	Rmu_sc0016737.1_g000006
rosa_roxburghii	Rroxscaffold_4G00276750
rosa_rugosa	Rorug01G0447000
rosa_samantha	Rh1CG443100
rosa_wichuraiana	Rw1G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	255
AccII	CGCG	1 cut(s)	139
AciI	CCGC	7 cut(s)	122, 139, 143, 150, 174, 193, 389
AclWI	GGATC	3 cut(s)	21, 619, 632
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	6 cut(s)	70, 76, 82, 379, 633, 802
AflIII	ACRYGT	1 cut(s)	469
AgsI	TTSAA	6 cut(s)	67, 592, 670, 692, 734, 778
AhlI	ACTAGT	1 cut(s)	538
AjnI	CCWGG	2 cut(s)	384, 515
AluBI	AGCT	7 cut(s)	311, 370, 413, 680, 704, 764, 790
AluI	AGCT	7 cut(s)	311, 370, 413, 680, 704, 764, 790
Alw21I	GWGCWC	1 cut(s)	706
Alw26I	GTCTC	1 cut(s)	431
AlwI	GGATC	3 cut(s)	21, 619, 632
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	5 cut(s)	40, 425, 529, 761, 823
ApoI	RAATTY	6 cut(s)	70, 76, 82, 379, 633, 802
ArsI	GACNNNNNNTTYG	4 cut(s)	74, 106, 456, 488
AspLEI	GCGC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	841
AsuII	TTCGAA	2 cut(s)	74, 80
BamHI	GGATCC	1 cut(s)	624
BanII	GRGCYC	1 cut(s)	706
Bbv12I	GWGCWC	1 cut(s)	706
BbvI	GCAGC	5 cut(s)	52, 412, 541, 773, 810
BceAI	ACGGC	2 cut(s)	118, 161
BciT130I	CCWGG	2 cut(s)	386, 517
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	431
BcuI	ACTAGT	1 cut(s)	538
BfaI	CTAG	5 cut(s)	312, 539, 545, 677, 686
BfuAI	ACCTGC	1 cut(s)	255
BglII	AGATCT	1 cut(s)	673
BisI	GCNGC	7 cut(s)	41, 150, 390, 426, 530, 762, 824
BlpI	GCTNAGC	1 cut(s)	366
BlsI	GCNGC	7 cut(s)	42, 151, 391, 427, 531, 763, 825
Bme1390I	CCNGG	2 cut(s)	386, 517
BmiI	GGNNCC	2 cut(s)	132, 626
BmrFI	CCNGG	2 cut(s)	386, 517
BmsI	GCATC	2 cut(s)	352, 791
BpmI	CTGGAG	1 cut(s)	38
Bpu1102I	GCTNAGC	1 cut(s)	366
Bpu14I	TTCGAA	2 cut(s)	74, 80
BsaI	GGTCTC	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	480
BseBI	CCWGG	2 cut(s)	386, 517
BseDI	CCNNGG	1 cut(s)	208
BseGI	GGATG	3 cut(s)	288, 782, 806
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	1 cut(s)	480
BseRI	GAGGAG	1 cut(s)	131
BseXI	GCAGC	5 cut(s)	52, 412, 541, 773, 810
BseYI	CCCAGC	2 cut(s)	152, 525
BsgI	GTGCAG	1 cut(s)	738
Bsh1236I	CGCG	1 cut(s)	139
BshFI	GGCC	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	706
BslFI	GGGAC	1 cut(s)	458
BsmAI	GTCTC	1 cut(s)	431
BsmFI	GGGAC	1 cut(s)	458
BsmI	GAATGC	1 cut(s)	587
BsnI	GGCC	1 cut(s)	149
Bso31I	GGTCTC	1 cut(s)	431
Bsp119I	TTCGAA	2 cut(s)	74, 80
Bsp1286I	GDGCHC	1 cut(s)	706
Bsp143I	GATC	6 cut(s)	13, 322, 624, 645, 673, 694
Bsp1720I	GCTNAGC	1 cut(s)	366
BspACI	CCGC	7 cut(s)	122, 139, 143, 150, 174, 193, 389
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	427
BspFNI	CGCG	1 cut(s)	139
BspHI	TCATGA	1 cut(s)	849
BspLI	GGNNCC	2 cut(s)	132, 626
BspMI	ACCTGC	1 cut(s)	255
BspPI	GGATC	3 cut(s)	21, 619, 632
BspT104I	TTCGAA	2 cut(s)	74, 80
BspTNI	GGTCTC	1 cut(s)	431
BsrI	ACTGG	1 cut(s)	480
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	6 cut(s)	13, 322, 624, 645, 673, 694
Bst2UI	CCWGG	2 cut(s)	386, 517
BstBI	TTCGAA	2 cut(s)	74, 80
BstC8I	GCNNGC	3 cut(s)	141, 423, 534
BstDEI	CTNAG	3 cut(s)	302, 366, 414
BstF5I	GGATG	3 cut(s)	288, 782, 806
BstFNI	CGCG	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	6 cut(s)	16, 325, 627, 648, 676, 697
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	6 cut(s)	13, 322, 624, 645, 673, 694
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 149, 761
BstNI	CCWGG	2 cut(s)	386, 517
BstNSI	RCATGY	1 cut(s)	473
BstSCI	CCNGG	2 cut(s)	384, 515
BstUI	CGCG	1 cut(s)	139
BstV1I	GCAGC	5 cut(s)	52, 412, 541, 773, 810
BstX2I	RGATCY	3 cut(s)	13, 624, 673
BstYI	RGATCY	3 cut(s)	13, 624, 673
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	3 cut(s)	288, 782, 806
BtsIMutI	CAGTG	1 cut(s)	655
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	3 cut(s)	141, 423, 534
CciI	TCATGA	1 cut(s)	849
CfoI	GCGC	1 cut(s)	40
CviAII	CATG	3 cut(s)	293, 470, 850
DdeI	CTNAG	3 cut(s)	302, 366, 414
DpnI	GATC	6 cut(s)	15, 324, 626, 647, 675, 696
DpnII	GATC	6 cut(s)	13, 322, 624, 645, 673, 694
EaeI	YGGCCR	1 cut(s)	147
EciI	GGCGGA	1 cut(s)	137
Ecl136II	GAGCTC	1 cut(s)	704
Eco24I	GRGCYC	1 cut(s)	706
Eco31I	GGTCTC	1 cut(s)	431
Eco53kI	GAGCTC	1 cut(s)	704
EcoICRI	GAGCTC	1 cut(s)	704
EcoRI	GAATTC	3 cut(s)	70, 76, 82
EcoRII	CCWGG	2 cut(s)	384, 515
EcoT38I	GRGCYC	1 cut(s)	706
FaeI	CATG	3 cut(s)	296, 473, 853
FaiI	YATR	9 cut(s)	102, 252, 267, 294, 445, 447, 471, 851, 863
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	3 cut(s)	292, 469, 849
FauI	CCCGC	1 cut(s)	132
FauNDI	CATATG	1 cut(s)	445
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	7 cut(s)	41, 150, 390, 426, 530, 762, 824
FokI	GGATG	3 cut(s)	275, 769, 793
FriOI	GRGCYC	1 cut(s)	706
Fsp4HI	GCNGC	7 cut(s)	41, 150, 390, 426, 530, 762, 824
FspBI	CTAG	5 cut(s)	312, 539, 545, 677, 686
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	7 cut(s)	41, 150, 390, 426, 530, 762, 824
GsaI	CCCAGC	2 cut(s)	156, 529
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	149
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	3 cut(s)	296, 473, 853
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	1 cut(s)	20
HphI	GGTGA	1 cut(s)	841
Hpy188I	TCNGA	4 cut(s)	408, 417, 574, 839
Hpy188III	TCNNGA	5 cut(s)	11, 17, 545, 692, 850
Hpy99I	CGWCG	2 cut(s)	139, 182
HpyAV	CCTTC	3 cut(s)	42, 239, 486
HpyCH4V	TGCA	4 cut(s)	250, 587, 749, 755
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 149, 761
HpyF3I	CTNAG	3 cut(s)	302, 366, 414
Hsp92II	CATG	3 cut(s)	296, 473, 853
HspAI	GCGC	1 cut(s)	38
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	6 cut(s)	13, 322, 624, 645, 673, 694
LmnI	GCTCC	6 cut(s)	124, 130, 454, 616, 701, 795
Lsp1109I	GCAGC	5 cut(s)	52, 412, 541, 773, 810
LweI	GCATC	2 cut(s)	352, 791
MaeI	CTAG	5 cut(s)	312, 539, 545, 677, 686
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	6 cut(s)	15, 324, 626, 647, 675, 696
MboI	GATC	6 cut(s)	13, 322, 624, 645, 673, 694
MboII	GAAGA	5 cut(s)	79, 118, 361, 364, 560
MflI	RGATCY	3 cut(s)	13, 624, 673
MhlI	GDGCHC	1 cut(s)	706
MluCI	AATT	9 cut(s)	70, 76, 82, 94, 202, 379, 633, 708, 802
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	750
MseI	TTAA	2 cut(s)	396, 657
MspA1I	CMGCKG	1 cut(s)	152
MspR9I	CCNGG	2 cut(s)	386, 517
Mva1269I	GAATGC	1 cut(s)	587
MvaI	CCWGG	2 cut(s)	386, 517
MvnI	CGCG	1 cut(s)	139
MwoI	GCNNNNNNNGC	3 cut(s)	37, 149, 761
NdeI	CATATG	1 cut(s)	445
NdeII	GATC	6 cut(s)	13, 322, 624, 645, 673, 694
NlaIII	CATG	3 cut(s)	296, 473, 853
NlaIV	GGNNCC	2 cut(s)	132, 626
NmeAIII	GCCGAG	1 cut(s)	189
NmuCI	GTSAC	1 cut(s)	314
NspI	RCATGY	1 cut(s)	473
NspV	TTCGAA	2 cut(s)	74, 80
PagI	TCATGA	1 cut(s)	849
PciI	ACATGT	1 cut(s)	469
PctI	GAATGC	1 cut(s)	587
PkrI	GCNGC	7 cut(s)	42, 151, 391, 427, 531, 763, 825
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PscI	ACATGT	1 cut(s)	469
Psp124BI	GAGCTC	1 cut(s)	706
Psp6I	CCWGG	2 cut(s)	384, 515
PspFI	CCCAGC	2 cut(s)	152, 525
PspGI	CCWGG	2 cut(s)	384, 515
PspN4I	GGNNCC	2 cut(s)	132, 626
PsuI	RGATCY	3 cut(s)	13, 624, 673
SacI	GAGCTC	1 cut(s)	706
SaqAI	TTAA	2 cut(s)	396, 657
SatI	GCNGC	7 cut(s)	41, 150, 390, 426, 530, 762, 824
Sau3AI	GATC	6 cut(s)	13, 322, 624, 645, 673, 694
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	2 cut(s)	386, 517
SduI	GDGCHC	1 cut(s)	706
SfaNI	GCATC	2 cut(s)	352, 791
SfuI	TTCGAA	2 cut(s)	74, 80
SpeI	ACTAGT	1 cut(s)	538
Sse9I	AATT	9 cut(s)	70, 76, 82, 94, 202, 379, 633, 708, 802
SsiI	CCGC	7 cut(s)	122, 139, 143, 150, 174, 193, 389
SspMI	CTAG	5 cut(s)	312, 539, 545, 677, 686
SstI	GAGCTC	1 cut(s)	706
StyD4I	CCNGG	2 cut(s)	384, 515
TaqI	TCGA	3 cut(s)	74, 80, 92
TasI	AATT	9 cut(s)	70, 76, 82, 94, 202, 379, 633, 708, 802
TauI	GCSGC	2 cut(s)	152, 392
Tru1I	TTAA	2 cut(s)	396, 657
Tru9I	TTAA	2 cut(s)	396, 657
TscAI	CASTG	1 cut(s)	655
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	5 cut(s)	40, 425, 529, 761, 823
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	2 cut(s)	609, 795
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	1 cut(s)	655
XapI	RAATTY	6 cut(s)	70, 76, 82, 379, 633, 802
XbaI	TCTAGA	1 cut(s)	544
XceI	RCATGY	1 cut(s)	473
XspI	CTAG	5 cut(s)	312, 539, 545, 677, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.