Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0016530

Physical Location & Seq

Genomic Coordinates Forward (+)

30157223 .. 30159998

Gene Structure 2776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G327300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAGTTTCCAAGATCTTGAGGCTGCTACTCCGCAGCAACAACGACAACCCATTTACTCGAATTCAATTCAGAAGCAAAGACAACGAGCAGCATATCAATATCAAGATCAAGATCAAAGTCAAAATCTTTACGAGCCTTCTCAGGCTGTGTCTGCTGGGATTTTCCAAATCAATACCGCCGTCTCCTCCTTTTTCCGCCTAGTCAATTCCCTCGGCACCCCTAGAGACACCCTTCAACTCCGTGACAAGCTGCATAAGTCACGGGCGCATATTGGGGAGTTGGTGAAAGATACTTCGGCCAAACTTAAGCAAGCCAGTGAAACTGATCAGCATGCCCAAGTTAGTGTTGTCAAGAAGATTGCTGATGCTAAGCTTGCAAAGGATTTCCAGGCGGTTCTTAAAGAATTTCAGAAGGCTCAGAGGCTTGCAGCTGAAAGGGAAACAACATTTGCTCCTTTTGTTCCCAAAGACGTTCTGCCATCCAGTTATCTTGCCCATGAGCAGGAGATGAGTTCAACTACGAGTTCCAAACAGCAAGCTCTTCTGCTAGAATCAAGAAGACAAGAGGTTTTACTGGCGGACAATGAGATTGCATTCAATGAAGCTATTATTGAAGAAAGGGAGCAAGGGATCCAAGAAATTCAACAACAGATCAGTGAGGTTAATGAGATTTTCAAAGATCTAGCTGTCCTGGTCCATGATCAAGGAGCTATAATCGATGATATTGGCTCTAACATTGAGAACTCTCATGCTGCAACTGCGCAAGCCACCTCCCAGCTTGTGAAAGCATCTAAGATCCAAAGATCTAATTCATCTCTGACCTGTTTGCTGTTGGTGATTTTTGGGATCATCCTGATCATTGTCATTATAGTTGTGGTCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin_2

Protein Analysis

295

Amino Acids

32.76

Weight (kDa)

5.75

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16830
fragaria_vesca	FvH4_7g34071
malus_domestica	MD01G1237000.v1.1 MD07G1309600.v1.1
prunus_persica	Prupe.2G327300_v2.0.a1
pyrus_communis	pycom01g24480 pycom07g28160
rosa_chinensis	RchiOBHm_Chr1g0384351
rosa_laevigata	RLG00000026046
rosa_multiflora	Rmu_sc0016737.1_g000006
rosa_roxburghii	Rroxscaffold_4G00276750
rosa_rugosa	Rorug01G0447000
rosa_samantha	Rh1CG443100
rosa_wichuraiana	Rw1G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	762
AccB1I	GGYRCC	1 cut(s)	215
AciI	CCGC	5 cut(s)	32, 177, 196, 392, 578
AclWI	GGATC	4 cut(s)	625, 638, 790, 854
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	3 cut(s)	61, 404, 639
AfiI	CCNNNNNNNGG	1 cut(s)	502
AflII	CTTAAG	1 cut(s)	305
AgsI	TTSAA	7 cut(s)	66, 236, 516, 598, 614, 644, 676
AjnI	CCWGG	2 cut(s)	387, 690
AluBI	AGCT	8 cut(s)	250, 373, 431, 539, 605, 686, 710, 778
AluI	AGCT	8 cut(s)	250, 373, 431, 539, 605, 686, 710, 778
Alw26I	GTCTC	2 cut(s)	187, 219
AlwI	GGATC	4 cut(s)	625, 638, 790, 854
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	6 cut(s)	23, 34, 89, 250, 428, 752
ApoI	RAATTY	3 cut(s)	61, 404, 639
AspLEI	GCGC	2 cut(s)	268, 763
AspS9I	GGNCC	1 cut(s)	694
AsuHPI	GGTGA	2 cut(s)	295, 847
AvaII	GGWCC	1 cut(s)	694
BamHI	GGATCC	1 cut(s)	630
BanI	GGYRCC	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	565
BbvI	GCAGC	6 cut(s)	10, 46, 101, 237, 440, 739
BccI	CCATC	1 cut(s)	487
BceAI	ACGGC	1 cut(s)	164
BciT130I	CCWGG	2 cut(s)	389, 692
BclI	TGATCA	3 cut(s)	325, 700, 855
BcoDI	GTCTC	2 cut(s)	187, 219
BfaI	CTAG	4 cut(s)	200, 222, 548, 683
BfrI	CTTAAG	1 cut(s)	305
BglII	AGATCT	3 cut(s)	13, 679, 803
BisI	GCNGC	6 cut(s)	24, 35, 90, 251, 429, 753
BlpI	GCTNAGC	1 cut(s)	369
BlsI	GCNGC	6 cut(s)	25, 36, 91, 252, 430, 754
Bme1390I	CCNGG	2 cut(s)	389, 692
Bme18I	GGWCC	1 cut(s)	694
BmgT120I	GGNCC	1 cut(s)	694
BmiI	GGNNCC	2 cut(s)	217, 632
BmrFI	CCNGG	2 cut(s)	389, 692
BmsI	GCATC	2 cut(s)	355, 797
BpiI	GAAGAC	1 cut(s)	565
Bpu1102I	GCTNAGC	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	38
Bsa29I	ATCGAT	1 cut(s)	717
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	211
BsaXI	ACNNNNNCTCC	2 cut(s)	436, 466
Bsc4I	CCNNNNNNNGG	1 cut(s)	502
Bse1I	ACTGG	3 cut(s)	315, 483, 579
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	389, 692
BseCI	ATCGAT	1 cut(s)	717
BseDI	CCNNGG	1 cut(s)	211
BseGI	GGATG	2 cut(s)	479, 849
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	502
BseMII	CTCAG	2 cut(s)	155, 431
BseNI	ACTGG	3 cut(s)	315, 483, 579
BseRI	GAGGAG	1 cut(s)	175
BseXI	GCAGC	6 cut(s)	10, 46, 101, 237, 440, 739
BseYI	CCCAGC	2 cut(s)	155, 774
BshFI	GGCC	1 cut(s)	299
BshNI	GGYRCC	1 cut(s)	215
BshVI	ATCGAT	1 cut(s)	717
BslI	CCNNNNNNNGG	1 cut(s)	502
BsmAI	GTCTC	2 cut(s)	187, 219
BsmBI	CGTCTC	1 cut(s)	187
BsmI	GAATGC	1 cut(s)	593
BsnI	GGCC	1 cut(s)	299
Bsp1720I	GCTNAGC	1 cut(s)	369
BspACI	CCGC	5 cut(s)	32, 177, 196, 392, 578
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	2 cut(s)	154, 430
BspDI	ATCGAT	1 cut(s)	717
BspLI	GGNNCC	2 cut(s)	217, 632
BspPI	GGATC	4 cut(s)	625, 638, 790, 854
BspQI	GCTCTTC	1 cut(s)	546
BspT107I	GGYRCC	1 cut(s)	215
BspTI	CTTAAG	1 cut(s)	305
BsrI	ACTGG	3 cut(s)	315, 483, 579
BssECI	CCNNGG	1 cut(s)	211
Bst2UI	CCWGG	2 cut(s)	389, 692
Bst6I	CTCTTC	1 cut(s)	546
BstAFI	CTTAAG	1 cut(s)	305
BstC8I	GCNNGC	6 cut(s)	312, 333, 375, 426, 537, 765
BstDEI	CTNAG	4 cut(s)	141, 369, 417, 792
BstF5I	GGATG	2 cut(s)	479, 849
BstHHI	GCGC	2 cut(s)	268, 763
BstMAI	GTCTC	2 cut(s)	187, 219
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 374, 758
BstNI	CCWGG	2 cut(s)	389, 692
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	2 cut(s)	387, 690
BstV1I	GCAGC	6 cut(s)	10, 46, 101, 237, 440, 739
BstV2I	GAAGAC	1 cut(s)	565
BstX2I	RGATCY	5 cut(s)	13, 630, 679, 795, 803
BstYI	RGATCY	5 cut(s)	13, 630, 679, 795, 803
Bsu15I	ATCGAT	1 cut(s)	717
BsuRI	GGCC	1 cut(s)	299
BsuTUI	ATCGAT	1 cut(s)	717
BtsCI	GGATG	2 cut(s)	479, 849
BtsIMutI	CAGTG	2 cut(s)	322, 661
Cac8I	GCNNGC	6 cut(s)	312, 333, 375, 426, 537, 765
CfoI	GCGC	2 cut(s)	268, 763
Cfr13I	GGNCC	1 cut(s)	694
ClaI	ATCGAT	1 cut(s)	717
CviAII	CATG	4 cut(s)	332, 497, 698, 749
DdeI	CTNAG	4 cut(s)	141, 369, 417, 792
EaeI	YGGCCR	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
EciI	GGCGGA	2 cut(s)	185, 593
Eco47I	GGWCC	1 cut(s)	694
EcoRI	GAATTC	1 cut(s)	61
EcoRII	CCWGG	2 cut(s)	387, 690
Esp3I	CGTCTC	1 cut(s)	187
FaeI	CATG	4 cut(s)	335, 500, 701, 752
FaiI	YATR	9 cut(s)	94, 255, 270, 333, 498, 699, 713, 750, 869
FatI	CATG	4 cut(s)	331, 496, 697, 748
FbaI	TGATCA	3 cut(s)	325, 700, 855
Fnu4HI	GCNGC	6 cut(s)	24, 35, 90, 251, 429, 753
FokI	GGATG	2 cut(s)	466, 836
Fsp4HI	GCNGC	6 cut(s)	24, 35, 90, 251, 429, 753
FspBI	CTAG	4 cut(s)	200, 222, 548, 683
FspI	TGCGCA	1 cut(s)	762
GlaI	GCGC	2 cut(s)	267, 762
GluI	GCNGC	6 cut(s)	24, 35, 90, 251, 429, 753
GsaI	CCCAGC	2 cut(s)	159, 778
HaeIII	GGCC	1 cut(s)	299
HhaI	GCGC	2 cut(s)	268, 763
Hin1II	CATG	4 cut(s)	335, 500, 701, 752
Hin6I	GCGC	2 cut(s)	266, 761
HinP1I	GCGC	2 cut(s)	266, 761
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	1 cut(s)	551
HphI	GGTGA	2 cut(s)	295, 847
Hpy188I	TCNGA	4 cut(s)	72, 411, 420, 819
Hpy188III	TCNNGA	6 cut(s)	17, 104, 110, 352, 555, 853
HpyAV	CCTTC	3 cut(s)	147, 242, 406
HpyCH4IV	ACGT	1 cut(s)	471
HpyCH4V	TGCA	5 cut(s)	253, 377, 428, 593, 755
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 374, 758
HpyF3I	CTNAG	4 cut(s)	141, 369, 417, 792
HpySE526I	ACGT	1 cut(s)	471
Hsp92II	CATG	4 cut(s)	335, 500, 701, 752
HspAI	GCGC	2 cut(s)	266, 761
Ksp22I	TGATCA	3 cut(s)	325, 700, 855
LguI	GCTCTTC	1 cut(s)	546
LmnI	GCTCC	3 cut(s)	457, 622, 707
Lsp1109I	GCAGC	6 cut(s)	10, 46, 101, 237, 440, 739
LweI	GCATC	2 cut(s)	355, 797
MaeI	CTAG	4 cut(s)	200, 222, 548, 683
MaeII	ACGT	1 cut(s)	471
MaeIII	GTNAC	2 cut(s)	242, 258
MboII	GAAGA	4 cut(s)	367, 533, 570, 626
MflI	RGATCY	5 cut(s)	13, 630, 679, 795, 803
MluCI	AATT	6 cut(s)	61, 66, 205, 404, 639, 808
MnlI	CCTC	7 cut(s)	13, 196, 221, 414, 559, 652, 781
MseI	TTAA	3 cut(s)	306, 399, 663
MspA1I	CMGCKG	1 cut(s)	431
MspCI	CTTAAG	1 cut(s)	305
MspR9I	CCNGG	2 cut(s)	389, 692
Mva1269I	GAATGC	1 cut(s)	593
MvaI	CCWGG	2 cut(s)	389, 692
MwoI	GCNNNNNNNGC	3 cut(s)	152, 374, 758
NlaIII	CATG	4 cut(s)	335, 500, 701, 752
NlaIV	GGNNCC	2 cut(s)	217, 632
NmeAIII	GCCGAG	1 cut(s)	192
NmuCI	GTSAC	2 cut(s)	242, 258
NsbI	TGCGCA	1 cut(s)	762
NspI	RCATGY	1 cut(s)	335
PaeI	GCATGC	1 cut(s)	335
PciSI	GCTCTTC	1 cut(s)	546
PctI	GAATGC	1 cut(s)	593
PfeI	GAWTC	1 cut(s)	551
PkrI	GCNGC	6 cut(s)	25, 36, 91, 252, 430, 754
Psp6I	CCWGG	2 cut(s)	387, 690
PspFI	CCCAGC	2 cut(s)	155, 774
PspGI	CCWGG	2 cut(s)	387, 690
PspN4I	GGNNCC	2 cut(s)	217, 632
PspPI	GGNCC	1 cut(s)	694
PsuI	RGATCY	5 cut(s)	13, 630, 679, 795, 803
PvuII	CAGCTG	1 cut(s)	431
SapI	GCTCTTC	1 cut(s)	546
SaqAI	TTAA	3 cut(s)	306, 399, 663
SatI	GCNGC	6 cut(s)	24, 35, 90, 251, 429, 753
Sau96I	GGNCC	1 cut(s)	694
ScrFI	CCNGG	2 cut(s)	389, 692
SfaNI	GCATC	2 cut(s)	355, 797
SinI	GGWCC	1 cut(s)	694
SmlI	CTYRAG	2 cut(s)	17, 305
SmoI	CTYRAG	2 cut(s)	17, 305
SphI	GCATGC	1 cut(s)	335
Sse9I	AATT	6 cut(s)	61, 66, 205, 404, 639, 808
SsiI	CCGC	5 cut(s)	32, 177, 196, 392, 578
SspMI	CTAG	4 cut(s)	200, 222, 548, 683
StyD4I	CCNGG	2 cut(s)	387, 690
TaiI	ACGT	1 cut(s)	474
TaqI	TCGA	2 cut(s)	59, 717
TasI	AATT	6 cut(s)	61, 66, 205, 404, 639, 808
TfiI	GAWTC	1 cut(s)	551
Tru1I	TTAA	3 cut(s)	306, 399, 663
Tru9I	TTAA	3 cut(s)	306, 399, 663
TscAI	CASTG	2 cut(s)	322, 661
TseFI	GTSAC	2 cut(s)	242, 258
TseI	GCWGC	6 cut(s)	23, 34, 89, 250, 428, 752
Tsp45I	GTSAC	2 cut(s)	242, 258
TspDTI	ATGAA	2 cut(s)	615, 801
TspGWI	ACGGA	1 cut(s)	230
TspRI	CASTG	2 cut(s)	322, 661
Vha464I	CTTAAG	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	694
XapI	RAATTY	3 cut(s)	61, 404, 639
XceI	RCATGY	1 cut(s)	335
XspI	CTAG	4 cut(s)	200, 222, 548, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.