Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016620

Physical Location & Seq

Genomic Coordinates Forward (+)

5543834 .. 5546537

Gene Structure 2704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2553 bp

ATGATCCGCCGCCTTCTCATCCCCAACGCCGCCGCAAAATCTCACCAGTACATTAAAGTCTCTCTCTTCTCGACATCGGCGCCGGAGATAACACCGCCGTTTATTCACAAATGCAAAACCATCTCTCAGGTCAAGCTTATTCACCAGAAACTCCTCTCTTTCGGAATCCTAACCTTGAATCTCACTTCCCACCTCATTTCCACCTATATCTCCGTCGGTTGCTTATCTCATGCCGTATCTCTCCTCCGTCGTTTTCCTCCATCTGACGCTGGTGTCTACCATTGGAATTCACTCATTCGCAGCTACGGCGACAATGGCTGCGCCAATAAATGTCTCTATTTGTTCGGCCTTATGCATTCTCTGTCATGGACGCCGGATAATTACACATTCCCCTTCGTCTTCAAGGCTTGCGGCGAGATATCCTCCGTTCGTTGTGGAGAATCTGCTCACGCGCTTTCTCTGGTAACTGGATTTATCTCCAATGTCTTTGTTGGGAATGCGCTTGTTGCTATGTATTCCCGTTGTCGTTCATTGAGTGATGCACGGAAGGTGTTCGACGAAATGTCTGTTTGGGATGTTGTATCGTGGAACTCTATAATAGAAAGTTATGCAAAGTTAGGCAAACCTAAGGTGGCGCTTGAAATGTTTAGCAGGATGACCAATGAATTCGGATGTAGACCTGATAATATTACCCTTGTGAATGTTCTTCCTCCTTGTGCTTCCCTAGGAACTCATTCACTAGGGAAGCAATTGCATTGTTTTGCAGTCACAAGTGAGATGATACAGAATATGTTTGTAGGGAATTGCTTGGTGGATATGTATGCAAAGTGTGGGATGATGGATGAGGCAAACACGGTGTTTTCGAACATGTCAGTGAAGGACGTAGTATCTTGGAATGCTATGGTTGCTGGGTATTCACAGATTGGAAGGTTTGAAGATGCTGTTAGGTTATTTGAGAAGATGCAGGAAGAGAAAATAAAAATGGATGTTGTTACTTGGAGTGCTGCTATTTCAGGGTATGCTCAACGGGGACTTGGATATGAAGCTTTGGGTGTGTGTAGGCAGATGTTGTCTTCTGGGATAAAACCAAATGAAGTCACGCTTATTTCGGTTCTTTCGGGTTGTGCTTCTGTTGGAGCATTGATGCATGGTAAAGAGATTCATTGTTATGCCATCAAATATCCCATAGACTTGCGTAAGAACGGTCATGGTGATGAGAATATGGTAATCAATCAACTGATTGACATGTACGCTAAGTGCAAAAAGGTTGATACTGCACGTGCTATGTTTGATTCACTTTCCCCCAAGGAAAGGGATGTTGTGACTTGGACTGTGATGATAGGTGGATACTCCCAGCACGGGGATGCAAATAAAGCTCTCGAACTTTTATCTGAGATGTTTGAGGAAGATTGCCAAACAAGACCAAATGCTTTTACCATATCATGTGCCCTCGTGGCATGTGCCAGTTTGGCTGCACTAAGAATTGGCAAGCAGATTCATGCTTATGCGTTGCGCAACCAGCAGAATGCAGTACCGCTGTTCGTATCAAACTGTCTAATAGACATGTATGCAAAATGTGGAAGCATCAGTGATGCCCGCCTTGTATTTGACAATATGATGGCGAAAAATGAAGTTACTTGGACATCTCTAATGACGGGTTATGGTATGCATGGTTATGGAGAAGAAGCTCTTGGAATCTTTGATGAAATGAGGAGAATAGGTTTTAAGCTTGATGGTGTTACATTACTTGTTGTATTATATGCTTGTAGTCATTCAGGAATGATTGATCAGGGCATGGAGTATTTCAATAGAATGAAAACTGTTTTTGGGGTTAGTCCTGGTCCGGAGCATTATGCATGTTTGGTTGACTTGTTAGGTCGTGCTGGCCGGTTGAATGCAGCTTTGCGTCTCATTGAAGAAATGCCAATGGAGCCTCCTCCTGTGGTATGGGTTGCTTTTCTCAGTTGCTGCAGAATCCACGGAAAAGTTGAACTCGGGGAGTACGCTGCGGAAAAAATAACAGAATTAGCATCTAATCATGATGGATCATATACATTACTCTCAAATTTGTATGCAAATGCAGGGCGTTGGAAAGATGTGACTAGGATCAGATCATTGATGAGACATAAAGGAGTTAAGAAAAGACCTGGTTGTAGTTGGGTTGAAGGAATTAAAGGAACTACTACGTTCTTCGTGGGTGATAAAACTCATCCACACGCTAAGGAAATATACCAGGTCCTCTTAGATCACATGCAACGCATCAAGGACATTGGTTATGTTCCTGAAACAGGCTTTGCTCTTCATGATGTAGACGATGAAGAGAAAGATGATCTTCTTTTCGAGCATAGTGAGAAGTTAGCTCTTGCATATGGTATTCTAACAACTCCGCAAGGTGCTGCTATCAGGATTACTAAGAATTTACGGGTATGTGGTGATTGCCATACAGCATTCACATACATGTCCAGAATCATTGATCATGATATTATATTGAGGGACTCAAGTCGCTTCCATCATTTCAAAAATGGATCGTGTTCATGCAAAGGTTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

850

Amino Acids

94.64

Weight (kDa)

7.99

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	192 - 231	8.2e-08	PPR repeat family
PPR	PF01535	194 - 220	6.2e-06	PPR repeat
PPR_2	PF13041	293 - 341	6.3e-13	PPR repeat family
PPR	PF01535	296 - 325	7.1e-08	PPR repeat
PPR_2	PF13041	329 - 376	2.8e-08	PPR repeat family
PPR_2	PF13041	438 - 488	1.6e-09	PPR repeat family
PPR	PF01535	441 - 471	7.4e-08	PPR repeat
PPR_2	PF13041	543 - 590	4.9e-08	PPR repeat family
PPR	PF01535	545 - 575	1.1e-08	PPR repeat
E_motif	PF20431	660 - 722	5.9e-27	E motif
Eplus_motif	PF20430	727 - 754	5.3e-14	E+ motif
DYW_deaminase	PF14432	758 - 850	1.7e-48	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16860
fragaria_vesca	FvH4_5g33150
malus_domestica	MD06G1234400.v1.1
prunus_persica	Prupe.7G002900_v2.0.a1
pyrus_communis	pycom06g20910
rosa_chinensis	RchiOBHm_Chr7g0231411
rosa_laevigata	RLG00000001419
rosa_multiflora	Rmu_sc0003396.1_g000030 Rmu_sc0010066.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229340
rosa_rugosa	Rorug07G0266400
rosa_samantha	Rh7BG395100 Rh7CG440800
rosa_wichuraiana	Rw7G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	272
Acc16I	TGCGCA	1 cut(s)	1514
AccB1I	GGYRCC	1 cut(s)	79
AccI	GTMKAC	3 cut(s)	276, 676, 2310
AccII	CGCG	1 cut(s)	452
AccIII	TCCGGA	1 cut(s)	1843
AclWI	GGATC	3 cut(s)	2053, 2114, 2533
AcoI	YGGCCR	1 cut(s)	1885
AcsI	RAATTY	4 cut(s)	286, 665, 2065, 2416
AcvI	CACGTG	1 cut(s)	1280
AcyI	GRCGYC	2 cut(s)	80, 371
AfaI	GTAC	4 cut(s)	50, 1250, 1533, 2003
AfiI	CCNNNNNNNGG	4 cut(s)	1311, 1359, 1360, 2288
AflIII	ACRYGT	4 cut(s)	867, 1245, 1563, 2457
AhdI	GACNNNNNGTC	1 cut(s)	562
AjnI	CCWGG	3 cut(s)	1837, 2146, 2232
AjuI	GAANNNNNNNTTGG	2 cut(s)	1674, 1706
AluBI	AGCT	8 cut(s)	136, 303, 1046, 1376, 1688, 1729, 1901, 2360
AluI	AGCT	8 cut(s)	136, 303, 1046, 1376, 1688, 1729, 1901, 2360
Alw26I	GTCTC	4 cut(s)	64, 338, 1913, 2116
AlwI	GGATC	3 cut(s)	2053, 2114, 2533
AlwNI	CAGNNNCTG	1 cut(s)	1968
Ama87I	CYCGRG	1 cut(s)	1994
Aor13HI	TCCGGA	1 cut(s)	1843
AoxI	GGCC	2 cut(s)	346, 1885
ApeKI	GCWGC	8 cut(s)	300, 318, 1004, 1472, 1898, 1968, 2006, 2396
ApoI	RAATTY	4 cut(s)	286, 665, 2065, 2416
Asp700I	GAANNNNTTC	2 cut(s)	551, 733
AspA2I	CCTAGG	1 cut(s)	724
AspLEI	GCGC	6 cut(s)	82, 323, 454, 502, 637, 1515
AspS9I	GGNCC	2 cut(s)	1841, 2236
AsuHPI	GGTGA	5 cut(s)	35, 134, 1223, 2210, 2444
AsuII	TTCGAA	1 cut(s)	863
AvaI	CYCGRG	1 cut(s)	1994
AvaII	GGWCC	2 cut(s)	1841, 2236
AvrII	CCTAGG	1 cut(s)	724
AxyI	CCTNAGG	1 cut(s)	627
BaeGI	GKGCMC	1 cut(s)	1450
BanI	GGYRCC	1 cut(s)	79
BauI	CACGAG	1 cut(s)	1451
BbrPI	CACGTG	1 cut(s)	1280
BbsI	GAAGAC	2 cut(s)	391, 1065
BbvI	GCAGC	8 cut(s)	305, 312, 991, 1459, 1910, 1955, 1993, 2383
BccI	CCATC	8 cut(s)	128, 268, 832, 1181, 1612, 1727, 2036, 2517
BceAI	ACGGC	3 cut(s)	82, 218, 322
BciT130I	CCWGG	3 cut(s)	1839, 2148, 2234
BciVI	GTATCC	1 cut(s)	1340
BclI	TGATCA	2 cut(s)	1786, 2473
BcoDI	GTCTC	4 cut(s)	64, 338, 1913, 2116
BfaI	CTAG	3 cut(s)	725, 740, 2103
BfmI	CTRYAG	1 cut(s)	1969
BfoI	RGCGCY	2 cut(s)	83, 638
BfuI	GTATCC	1 cut(s)	1340
BglI	GCCNNNNNGGC	2 cut(s)	1454, 1469
BlnI	CCTAGG	1 cut(s)	724
Bme1390I	CCNGG	3 cut(s)	1839, 2148, 2234
Bme18I	GGWCC	2 cut(s)	1841, 2236
BmeRI	GACNNNNNGTC	1 cut(s)	562
BmeT110I	CYCGRG	1 cut(s)	1994
BmgT120I	GGNCC	2 cut(s)	1841, 2236
BmiI	GGNNCC	2 cut(s)	81, 1932
BmrFI	CCNGG	3 cut(s)	1839, 2148, 2234
BmsI	GCATC	9 cut(s)	529, 928, 951, 1134, 1354, 1582, 1593, 2039, 2268
BoxI	GACNNNNGTC	1 cut(s)	2499
BpiI	GAAGAC	2 cut(s)	391, 1065
BplI	GAGNNNNNCTC	2 cut(s)	407, 439
Bpu10I	CCTNAGC	1 cut(s)	2220
Bpu14I	TTCGAA	1 cut(s)	863
BpuEI	CTTGAG	1 cut(s)	2482
BsaAI	YACGTR	1 cut(s)	1280
BsaHI	GRCGYC	2 cut(s)	80, 371
BsaJI	CCNNGG	3 cut(s)	724, 1305, 1978
BsaWI	WCCGGW	1 cut(s)	1843
BsaXI	ACNNNNNCTCC	2 cut(s)	1705, 1735
Bsc4I	CCNNNNNNNGG	4 cut(s)	1311, 1359, 1360, 2288
Bse118I	RCCGGY	1 cut(s)	1887
Bse1I	ACTGG	4 cut(s)	46, 472, 1464, 2552
Bse21I	CCTNAGG	1 cut(s)	627
BseAI	TCCGGA	1 cut(s)	1843
BseBI	CCWGG	3 cut(s)	1839, 2148, 2234
BseDI	CCNNGG	3 cut(s)	724, 1305, 1978
BseLI	CCNNNNNNNGG	4 cut(s)	1311, 1359, 1360, 2288
BseMII	CTCAG	3 cut(s)	140, 1383, 1975
BseNI	ACTGG	4 cut(s)	46, 472, 1464, 2552
BseRI	GAGGAG	4 cut(s)	143, 233, 1726, 1926
BseSI	GKGCMC	1 cut(s)	1450
BseXI	GCAGC	8 cut(s)	305, 312, 991, 1459, 1910, 1955, 1993, 2383
BseYI	CCCAGC	2 cut(s)	908, 1353
BsgI	GTGCAG	2 cut(s)	1260, 1458
Bsh1236I	CGCG	1 cut(s)	452
BshFI	GGCC	2 cut(s)	348, 1887
BshNI	GGYRCC	1 cut(s)	79
BsiHKCI	CYCGRG	1 cut(s)	1994
BsiSI	CCGG	4 cut(s)	83, 374, 1844, 1888
BslFI	GGGAC	2 cut(s)	1044, 2507
BslI	CCNNNNNNNGG	4 cut(s)	1311, 1359, 1360, 2288
BsmAI	GTCTC	4 cut(s)	64, 338, 1913, 2116
BsmBI	CGTCTC	1 cut(s)	1913
BsmFI	GGGAC	2 cut(s)	1044, 2507
BsmI	GAATGC	6 cut(s)	355, 502, 901, 1531, 1900, 2447
BsnI	GGCC	2 cut(s)	348, 1887
BsoBI	CYCGRG	1 cut(s)	1994
Bsp119I	TTCGAA	1 cut(s)	863
Bsp1286I	GDGCHC	1 cut(s)	1450
Bsp13I	TCCGGA	1 cut(s)	1843
Bsp143I	GATC	9 cut(s)	3, 1786, 2045, 2106, 2111, 2245, 2329, 2473, 2525
BspANI	GGCC	2 cut(s)	348, 1887
BspCNI	CTCAG	3 cut(s)	139, 1384, 1974
BspEI	TCCGGA	1 cut(s)	1843
BspFNI	CGCG	1 cut(s)	452
BspHI	TCATGA	3 cut(s)	2038, 2302, 2476
BspLI	GGNNCC	2 cut(s)	81, 1932
BspMAI	CTGCAG	1 cut(s)	1973
BspPI	GGATC	3 cut(s)	2053, 2114, 2533
BspQI	GCTCTTC	1 cut(s)	2304
BspT104I	TTCGAA	1 cut(s)	863
BspT107I	GGYRCC	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	1887
BsrI	ACTGG	4 cut(s)	46, 472, 1464, 2552
BssAI	RCCGGY	1 cut(s)	1887
BssECI	CCNNGG	3 cut(s)	724, 1305, 1978
BssMI	GATC	9 cut(s)	3, 1786, 2045, 2106, 2111, 2245, 2329, 2473, 2525
BssNI	GRCGYC	2 cut(s)	80, 371
BssSI	CACGAG	1 cut(s)	1451
BssT1I	CCWWGG	2 cut(s)	724, 1305
Bst2BI	CACGAG	1 cut(s)	1451
Bst2UI	CCWGG	3 cut(s)	1839, 2148, 2234
Bst4CI	ACNGT	5 cut(s)	856, 1205, 1333, 1553, 1822
Bst6I	CTCTTC	4 cut(s)	71, 963, 2304, 2313
BstACI	GRCGYC	2 cut(s)	80, 371
BstBAI	YACGTR	1 cut(s)	1280
BstBI	TTCGAA	1 cut(s)	863
BstC8I	GCNNGC	4 cut(s)	409, 1490, 1597, 1885
BstDEI	CTNAG	9 cut(s)	126, 627, 1254, 1392, 1478, 1961, 2220, 2242, 2412
BstDSI	CCRYGG	1 cut(s)	1978
BstENI	CCTNNNNNAGG	1 cut(s)	2286
BstFNI	CGCG	1 cut(s)	452
BstH2I	RGCGCY	2 cut(s)	83, 638
BstHHI	GCGC	6 cut(s)	82, 323, 454, 502, 637, 1515
BstKTI	GATC	9 cut(s)	6, 1789, 2048, 2109, 2114, 2248, 2332, 2476, 2528
BstMAI	GTCTC	4 cut(s)	64, 338, 1913, 2116
BstMBI	GATC	9 cut(s)	3, 1786, 2045, 2106, 2111, 2245, 2329, 2473, 2525
BstMWI	GCNNNNNNNGC	9 cut(s)	306, 315, 506, 905, 1373, 1454, 1469, 1519, 1930
BstNI	CCWGG	3 cut(s)	1839, 2148, 2234
BstNSI	RCATGY	7 cut(s)	871, 1249, 1461, 1567, 1860, 2254, 2461
BstPAI	GACNNNNGTC	1 cut(s)	2499
BstSCI	CCNGG	3 cut(s)	1837, 2146, 2232
BstSFI	CTRYAG	1 cut(s)	1969
BstSLI	GKGCMC	1 cut(s)	1450
BstUI	CGCG	1 cut(s)	452
BstV1I	GCAGC	8 cut(s)	305, 312, 991, 1459, 1910, 1955, 1993, 2383
BstV2I	GAAGAC	2 cut(s)	391, 1065
Bsu36I	CCTNAGG	1 cut(s)	627
BsuI	GTATCC	1 cut(s)	1340
BsuRI	GGCC	2 cut(s)	348, 1887
BtgI	CCRYGG	1 cut(s)	1978
BtsIMutI	CAGTG	2 cut(s)	879, 1594
Cac8I	GCNNGC	4 cut(s)	409, 1490, 1597, 1885
CaiI	CAGNNNCTG	1 cut(s)	1968
CciI	TCATGA	3 cut(s)	2038, 2302, 2476
CfoI	GCGC	6 cut(s)	82, 323, 454, 502, 637, 1515
Cfr10I	RCCGGY	1 cut(s)	1887
Cfr13I	GGNCC	2 cut(s)	1841, 2236
CseI	GACGC	3 cut(s)	275, 379, 1895
CsiI	ACCWGGT	2 cut(s)	2146, 2232
Csp6I	GTAC	4 cut(s)	49, 1249, 1532, 2002
CviQI	GTAC	4 cut(s)	49, 1249, 1532, 2002
DdeI	CTNAG	9 cut(s)	126, 627, 1254, 1392, 1478, 1961, 2220, 2242, 2412
DinI	GGCGCC	1 cut(s)	81
DpnI	GATC	9 cut(s)	5, 1788, 2047, 2108, 2113, 2247, 2331, 2475, 2527
DpnII	GATC	9 cut(s)	3, 1786, 2045, 2106, 2111, 2245, 2329, 2473, 2525
DrdI	GACNNNNNNGTC	1 cut(s)	272
DriI	GACNNNNNGTC	1 cut(s)	562
DseDI	GACNNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	1 cut(s)	1885
Eam1104I	CTCTTC	4 cut(s)	71, 963, 2304, 2313
Eam1105I	GACNNNNNGTC	1 cut(s)	562
EarI	CTCTTC	4 cut(s)	71, 963, 2304, 2313
Eco130I	CCWWGG	2 cut(s)	724, 1305
Eco32I	GATATC	1 cut(s)	420
Eco47I	GGWCC	2 cut(s)	1841, 2236
Eco72I	CACGTG	1 cut(s)	1280
Eco81I	CCTNAGG	1 cut(s)	627
Eco88I	CYCGRG	1 cut(s)	1994
EcoNI	CCTNNNNNAGG	1 cut(s)	2286
EcoO109I	RGGNCCY	1 cut(s)	2236
EcoRI	GAATTC	2 cut(s)	286, 665
EcoRII	CCWGG	3 cut(s)	1837, 2146, 2232
EcoRV	GATATC	1 cut(s)	420
EcoT14I	CCWWGG	2 cut(s)	724, 1305
EcoT22I	ATGCAT	4 cut(s)	357, 1149, 1671, 1858
EgeI	GGCGCC	1 cut(s)	81
EheI	GGCGCC	1 cut(s)	81
ErhI	CCWWGG	2 cut(s)	724, 1305
Esp3I	CGTCTC	1 cut(s)	1913
FalI	AAGNNNNNCTT	6 cut(s)	1086, 1118, 1674, 1706, 2316, 2348
FaqI	GGGAC	2 cut(s)	1044, 2507
FauI	CCCGC	1 cut(s)	1604
FauNDI	CATATG	1 cut(s)	2368
FbaI	TGATCA	2 cut(s)	1786, 2473
FblI	GTMKAC	3 cut(s)	276, 676, 2310
FspBI	CTAG	3 cut(s)	725, 740, 2103
FspI	TGCGCA	1 cut(s)	1514
GlaI	GCGC	6 cut(s)	81, 322, 453, 501, 636, 1514
GsaI	CCCAGC	2 cut(s)	912, 1357
HaeII	RGCGCY	2 cut(s)	83, 638
HaeIII	GGCC	2 cut(s)	348, 1887
HapII	CCGG	4 cut(s)	83, 374, 1844, 1888
HgaI	GACGC	3 cut(s)	275, 379, 1895
HhaI	GCGC	6 cut(s)	82, 323, 454, 502, 637, 1515
Hin1I	GRCGYC	2 cut(s)	80, 371
Hin6I	GCGC	6 cut(s)	80, 321, 452, 500, 635, 1513
HinP1I	GCGC	6 cut(s)	80, 321, 452, 500, 635, 1513
HincII	GTYRAC	1 cut(s)	1867
HindII	GTYRAC	1 cut(s)	1867
HindIII	AAGCTT	3 cut(s)	134, 1044, 1727
HpaII	CCGG	4 cut(s)	83, 374, 1844, 1888
HphI	GGTGA	5 cut(s)	35, 134, 1223, 2210, 2444
Hpy166II	GTNNAC	4 cut(s)	277, 677, 1867, 2311
Hpy188I	TCNGA	5 cut(s)	164, 265, 671, 1393, 2111
Hpy8I	GTNNAC	4 cut(s)	277, 677, 1867, 2311
Hpy99I	CGWCG	3 cut(s)	218, 252, 560
HpyAV	CCTTC	6 cut(s)	23, 403, 541, 871, 921, 2159
HpyCH4III	ACNGT	5 cut(s)	856, 1205, 1333, 1553, 1822
HpyCH4IV	ACGT	3 cut(s)	882, 1279, 2186
HpyF10VI	GCNNNNNNNGC	9 cut(s)	306, 315, 506, 905, 1373, 1454, 1469, 1519, 1930
HpyF3I	CTNAG	9 cut(s)	126, 627, 1254, 1392, 1478, 1961, 2220, 2242, 2412
HpySE526I	ACGT	3 cut(s)	882, 1279, 2186
Hsp92I	GRCGYC	2 cut(s)	80, 371
HspAI	GCGC	6 cut(s)	80, 321, 452, 500, 635, 1513
KasI	GGCGCC	1 cut(s)	79
Kpn2I	TCCGGA	1 cut(s)	1843
Ksp22I	TGATCA	2 cut(s)	1786, 2473
Kzo9I	GATC	9 cut(s)	3, 1786, 2045, 2106, 2111, 2245, 2329, 2473, 2525
LguI	GCTCTTC	1 cut(s)	2304
LmnI	GCTCC	3 cut(s)	1136, 1846, 1930
Lsp1109I	GCAGC	8 cut(s)	305, 312, 991, 1459, 1910, 1955, 1993, 2383
LweI	GCATC	9 cut(s)	529, 928, 951, 1134, 1354, 1582, 1593, 2039, 2268
MabI	ACCWGGT	2 cut(s)	2146, 2232
MaeI	CTAG	3 cut(s)	725, 740, 2103
MaeII	ACGT	3 cut(s)	882, 1279, 2186
MaeIII	GTNAC	9 cut(s)	463, 766, 991, 1096, 1321, 1633, 1738, 2098, 2543
MalI	GATC	9 cut(s)	5, 1788, 2047, 2108, 2113, 2247, 2331, 2475, 2527
MboI	GATC	9 cut(s)	3, 1786, 2045, 2106, 2111, 2245, 2329, 2473, 2525
MfeI	CAATTG	1 cut(s)	749
MhlI	GDGCHC	1 cut(s)	1450
Mly113I	GGCGCC	1 cut(s)	80
MlyI	GAGTC	1 cut(s)	2489
MmeI	TCCRAC	2 cut(s)	1114, 2069
Mph1103I	ATGCAT	4 cut(s)	357, 1149, 1671, 1858
MroI	TCCGGA	1 cut(s)	1843
MroXI	GAANNNNTTC	2 cut(s)	551, 733
MseI	TTAA	4 cut(s)	54, 1725, 2136, 2172
MslI	CAYNNNNRTG	7 cut(s)	872, 1167, 1212, 1362, 1503, 1674, 2456
MspA1I	CMGCKG	1 cut(s)	1537
MspI	CCGG	4 cut(s)	83, 374, 1844, 1888
MspR9I	CCNGG	3 cut(s)	1839, 2148, 2234
MunI	CAATTG	1 cut(s)	749
Mva1269I	GAATGC	6 cut(s)	355, 502, 901, 1531, 1900, 2447
MvaI	CCWGG	3 cut(s)	1839, 2148, 2234
MvnI	CGCG	1 cut(s)	452
MwoI	GCNNNNNNNGC	9 cut(s)	306, 315, 506, 905, 1373, 1454, 1469, 1519, 1930
NarI	GGCGCC	1 cut(s)	80
NdeI	CATATG	1 cut(s)	2368
NdeII	GATC	9 cut(s)	3, 1786, 2045, 2106, 2111, 2245, 2329, 2473, 2525
NlaIV	GGNNCC	2 cut(s)	81, 1932
NmuCI	GTSAC	4 cut(s)	766, 1096, 1321, 2098
NsbI	TGCGCA	1 cut(s)	1514
NsiI	ATGCAT	4 cut(s)	357, 1149, 1671, 1858
NspI	RCATGY	7 cut(s)	871, 1249, 1461, 1567, 1860, 2254, 2461
NspV	TTCGAA	1 cut(s)	863
PagI	TCATGA	3 cut(s)	2038, 2302, 2476
PciI	ACATGT	4 cut(s)	867, 1245, 1563, 2457
PciSI	GCTCTTC	1 cut(s)	2304
PcsI	WCGNNNNNNNCGW	1 cut(s)	860
PctI	GAATGC	6 cut(s)	355, 502, 901, 1531, 1900, 2447
PdmI	GAANNNNTTC	2 cut(s)	551, 733
PfeI	GAWTC	9 cut(s)	165, 178, 440, 1159, 1292, 1495, 1695, 1974, 2466
PleI	GAGTC	1 cut(s)	2489
PluTI	GGCGCC	1 cut(s)	83
PmaCI	CACGTG	1 cut(s)	1280
PmlI	CACGTG	1 cut(s)	1280
PpsI	GAGTC	1 cut(s)	2489
Ppu21I	YACGTR	1 cut(s)	1280
PpuMI	RGGWCCY	1 cut(s)	2236
PscI	ACATGT	4 cut(s)	867, 1245, 1563, 2457
PshAI	GACNNNNGTC	1 cut(s)	2499
Psp5II	RGGWCCY	1 cut(s)	2236
Psp6I	CCWGG	3 cut(s)	1837, 2146, 2232
PspCI	CACGTG	1 cut(s)	1280
PspFI	CCCAGC	2 cut(s)	908, 1353
PspGI	CCWGG	3 cut(s)	1837, 2146, 2232
PspN4I	GGNNCC	2 cut(s)	81, 1932
PspPI	GGNCC	2 cut(s)	1841, 2236
PspPPI	RGGWCCY	1 cut(s)	2236
PstI	CTGCAG	1 cut(s)	1973
PstNI	CAGNNNCTG	1 cut(s)	1968
RsaI	GTAC	4 cut(s)	50, 1250, 1533, 2003
RsaNI	GTAC	4 cut(s)	49, 1249, 1532, 2002
RseI	CAYNNNNRTG	7 cut(s)	872, 1167, 1212, 1362, 1503, 1674, 2456
SapI	GCTCTTC	1 cut(s)	2304
SaqAI	TTAA	4 cut(s)	54, 1725, 2136, 2172
Sau3AI	GATC	9 cut(s)	3, 1786, 2045, 2106, 2111, 2245, 2329, 2473, 2525
Sau96I	GGNCC	2 cut(s)	1841, 2236
SchI	GAGTC	1 cut(s)	2489
ScrFI	CCNGG	3 cut(s)	1839, 2148, 2234
SduI	GDGCHC	1 cut(s)	1450
SexAI	ACCWGGT	2 cut(s)	2146, 2232
SfaNI	GCATC	9 cut(s)	529, 928, 951, 1134, 1354, 1582, 1593, 2039, 2268
SfcI	CTRYAG	1 cut(s)	1969
SfoI	GGCGCC	1 cut(s)	81
SfuI	TTCGAA	1 cut(s)	863
SinI	GGWCC	2 cut(s)	1841, 2236
SmiMI	CAYNNNNRTG	7 cut(s)	872, 1167, 1212, 1362, 1503, 1674, 2456
SmlI	CTYRAG	1 cut(s)	2497
SmoI	CTYRAG	1 cut(s)	2497
SspDI	GGCGCC	1 cut(s)	79
SspI	AATATT	1 cut(s)	688
SspMI	CTAG	3 cut(s)	725, 740, 2103
StyD4I	CCNGG	3 cut(s)	1837, 2146, 2232
StyI	CCWWGG	2 cut(s)	724, 1305
TaaI	ACNGT	5 cut(s)	856, 1205, 1333, 1553, 1822
TaiI	ACGT	3 cut(s)	885, 1282, 2189
TaqI	TCGA	5 cut(s)	71, 555, 863, 1380, 2340
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	4 cut(s)	12, 32, 35, 414
TfiI	GAWTC	9 cut(s)	165, 178, 440, 1159, 1292, 1495, 1695, 1974, 2466
Tru1I	TTAA	4 cut(s)	54, 1725, 2136, 2172
Tru9I	TTAA	4 cut(s)	54, 1725, 2136, 2172
TscAI	CASTG	2 cut(s)	879, 1594
TseFI	GTSAC	4 cut(s)	766, 1096, 1321, 2098
TseI	GCWGC	8 cut(s)	300, 318, 1004, 1472, 1898, 1968, 2006, 2396
Tsp45I	GTSAC	4 cut(s)	766, 1096, 1321, 2098
TspGWI	ACGGA	5 cut(s)	202, 236, 415, 559, 1995
TspRI	CASTG	2 cut(s)	879, 1594
VpaK11BI	GGWCC	2 cut(s)	1841, 2236
XagI	CCTNNNNNAGG	1 cut(s)	2286
XapI	RAATTY	4 cut(s)	286, 665, 2065, 2416
XceI	RCATGY	7 cut(s)	871, 1249, 1461, 1567, 1860, 2254, 2461
XmaJI	CCTAGG	1 cut(s)	724
XmiI	GTMKAC	3 cut(s)	276, 676, 2310
XmnI	GAANNNNTTC	2 cut(s)	551, 733
XspI	CTAG	3 cut(s)	725, 740, 2103
Zsp2I	ATGCAT	4 cut(s)	357, 1149, 1671, 1858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.