Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0016620

Physical Location & Seq

Genomic Coordinates Forward (+)

51556298 .. 51558856

Gene Structure 2559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G034710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2451 bp

ATGCTTCATATTTTGTTTGGTCCAAAACCCTCCCTTAAACCCTTCACCACCAAAATCACCAAAGCCTTCTTCTCCACTACACCAACCTCCACACCAACATTACTTCTAAAACGATGCAACTCTCTACTCCAAGTCAACCTCGTCCACCAACACATCCTCGTCCGCGGCGCCTCCCACTCCCTCACCGACCTCATCGCTGCCTACGTAGCCTGCAACGCTCCTTCACGAGCCTTGTCTGTCCTCGAACGCCTCGCCCCGCCGTGCCCCGCCACCGTTTACTGGTGGAACGTGCTTATCCGGAGCGCCGTGCGTTCTGGGTTTCTTGAAGACGTGCTCTGTCTCTACCGGAGAATGCAGAGACTTGGGTGGAAGCCTGACCATTATACTTACCCTTTTGTCTTCAAAGCCTGCGGCGAGCTTGGCTCGTTCCGGCGAGGCGCCTCGGTCCATGGGGCTGTGTGTGCGGCTGGGTTTGAGTCGAATGTGTTTGTTTGCAATGCGGTGGTGGCAATGTACGGCAGGTGTGGGGCAGGGATTGGGGATGTTGTGTCGTGGAATTCGATTACGGCGGTTTATGCTCAGAGTGGGGATTCAAAGAATGCGGTTGGAATGTTTGGTTTGATGACAGGTGATTTTCGTGTGCAGCCGGATGCTGTTAGCTTGGTTAATGTTCTTCCTTCGTGCTCTTCGCTTGGGGAACCGAAGTGGGGGATGCAGATTCACAGTTATGCTGTTAAGAGTGGGTTGGCTGAGGATGTGTTTGTGGGGAATGCGGTTATTGATATGTATGCCAAGTGTGGGATGATGGACGAGGCAAACAATGTGTTTGATGGGATGAAGGTTAAGGATGTGGTTTCGTGGAATGCTGTGGTAACTGGGTATTCTCAGGTTGGTAGATTTGAGAATGTTATTGGTTTATTTGAAAAGATGAGGGAGGCGAAGATTGAGTTGAATGTTGTCACTTGGAGTGCTGTGATTGCAGGGTATGCGCAGAGGGGACATGGTTACCAAGCACTGGATGTGTTTCGGCAAATGATGGCTTGTGGCTCTGAGCCGAATGTTGTGACACTTGTGTCTCTTCTTTCGGGTTGTGCCTCTGCAGGAGCACTAAATCGTGGCAGAGAAACTCACGGTTATGCAATTAAATGGATGCTGAACTTGGAAGGAAATGACCCTGGAAATGATATTATGGTAATTAATGGTTTGATTGACATGTATACTAAATGCAAGAGTGCCAAAGTTGCTCGATTGATTTTTGATTCTCTATCACCAGACAGAAAAAATGTGGTGACGTGGACGGTGATGATTGGTGGGTATGCCCAGCATGGTGAAGCAAATGAGGCACTTGAACTTTTCTACCAGATGCTAAGACAGAATTTTCCCTTAAAGCCAAATGGTTTTACTATATCTTGTGCCCTGATGGCCTGTGCTCGTTTGGGTGCATTGAGGTCTGGTAAACAAATTCATGCTTATGTACTACGCAATCAGTATGATTCTATGAAGCTGTTTGTGGCCAATTGCCTTATTGATATGTATTCCAAATCGGGAGACGTTGATACTGCTAGAGTTGTGTTTGATAACCTGGAACATCGGAATGAAGTTTCTTGGACTTCACTAATGACAGGTTATGGAATGCATGGTCGTGGTGAAGAAGCTCTACAAATTTTTGATGAGATGCAGAGACTGGGCCTGGTGCCTGATGCTGTAACATTCCTTGTTGTTCTGTATGCTTGCAGCCATTCTGGAATGATTGATGAGGGAATGAGATACTTCAATGGCATGAGCAAGAACTCTGGGGTTGTTCCTGGGCCAGAGCACTATGCTTGTATGGCTGACCTCTTGGGGCGTGCTGGTCGCTTGGATGACGCTATGAACCTGATCAAAAGCATGCCTATGGAACCGACCCCAATTGTATGGGTGGCCTTGCTTAGTGCTTGCAGGATCCATGGCAATGTTGAGCTTGGGGAATATGCTGCAGATCGGTTAACAGAGTTGGACTCAGAGAATGATGGTTCGTATACATTGCTTTCAAACATATATGCCAATGCCAAGCGTTGGAAAGATGTTTCCAGGATTAGATTGTTAATGAAACATACGGGCATCAAGAAGAGGCCGGGTTGCAGTTGGGTGCAAGGAAAGAAAGGCACAACAACCTTCTTTGTGGGTGATAGGACTCATCCACAATTTGATAAGCGCATCAAAGGCATGGGGTACATTCCTGAGACAAGCTTTGCACTTCATGATGTTGATGATGAGGAGAAAGGAGATCTTCTCTTTGAACACAGTGAAAGTGCGCCCATCCGGATTACCAAGAACTTGCGTGTTTGTGGTGATTGCCACACTGCAATGAAGTACATATCCATGATTATTGAGCATGAAATCATACTGAGAGATTCAAGTCGCTTCCATCATTTCAAGAAAGGATCCTGCTCATGCCGAGGCTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

816

Amino Acids

90.33

Weight (kDa)

8.45

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	92 - 137	1.4e-07	PPR repeat family
PPR_2	PF13041	282 - 323	1.9e-08	PPR repeat family
PPR	PF01535	285 - 314	9.3e-06	PPR repeat
PPR_3	PF13812	306 - 364	4.5e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	318 - 365	3.5e-10	PPR repeat family
PPR_2	PF13041	427 - 478	3e-09	PPR repeat family
PPR	PF01535	430 - 459	3.7e-08	PPR repeat
PPR_2	PF13041	532 - 579	8.3e-12	PPR repeat family
PPR	PF01535	534 - 564	6e-09	PPR repeat
E_motif	PF20431	649 - 711	1.1e-31	E motif
DYW_deaminase	PF14432	737 - 816	1.9e-30	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16860
fragaria_vesca	FvH4_5g33150
malus_domestica	MD06G1234400.v1.1
prunus_persica	Prupe.7G002900_v2.0.a1
pyrus_communis	pycom06g20910
rosa_chinensis	RchiOBHm_Chr7g0231411
rosa_laevigata	RLG00000001419
rosa_multiflora	Rmu_sc0003396.1_g000030 Rmu_sc0010066.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229340
rosa_rugosa	Rorug07G0266400
rosa_samantha	Rh7BG395100 Rh7CG440800
rosa_wichuraiana	Rw7G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	510
AasI	GACNNNNNNGTC	1 cut(s)	1072
Acc16I	TGCGCA	1 cut(s)	990
Acc36I	ACCTGC	1 cut(s)	510
AccB1I	GGYRCC	3 cut(s)	167, 437, 1693
AccB7I	CCANNNNNTGG	2 cut(s)	1015, 2055
AccI	GTMKAC	2 cut(s)	1217, 2018
AccII	CGCG	1 cut(s)	165
AccIII	TCCGGA	2 cut(s)	297, 2301
AclWI	GGATC	4 cut(s)	1936, 1949, 2418, 2431
AcoI	YGGCCR	1 cut(s)	1512
AcsI	RAATTY	4 cut(s)	556, 1375, 1461, 1662
AcyI	GRCGYC	2 cut(s)	168, 438
AfaI	GTAC	4 cut(s)	515, 1476, 2213, 2354
AfiI	CCNNNNNNNGG	5 cut(s)	279, 707, 798, 1015, 2055
AflIII	ACRYGT	1 cut(s)	1212
AjiI	CACGTC	2 cut(s)	331, 1293
AjnI	CCWGG	5 cut(s)	1174, 1581, 1689, 1804, 2069
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	6 cut(s)	418, 660, 1504, 1655, 1960, 2229
AluI	AGCT	6 cut(s)	418, 660, 1504, 1655, 1960, 2229
Alw21I	GWGCWC	5 cut(s)	336, 686, 1108, 1432, 1818
Alw26I	GTCTC	6 cut(s)	344, 352, 1080, 1542, 1675, 2216
AlwI	GGATC	4 cut(s)	1936, 1949, 2418, 2431
AlwNI	CAGNNNCTG	1 cut(s)	1684
Aor13HI	TCCGGA	2 cut(s)	297, 2301
AoxI	GGCC	6 cut(s)	1422, 1512, 1687, 1808, 1920, 2111
ApeKI	GCWGC	4 cut(s)	197, 643, 1734, 1973
ApoI	RAATTY	4 cut(s)	556, 1375, 1461, 1662
AseI	ATTAAT	1 cut(s)	1197
AspLEI	GCGC	6 cut(s)	170, 305, 440, 991, 2196, 2296
AspS9I	GGNCC	4 cut(s)	20, 445, 1687, 1808
AsuC2I	CCSGG	1 cut(s)	2115
AvaII	GGWCC	2 cut(s)	20, 445
BaeGI	GKGCMC	2 cut(s)	266, 1417
BalI	TGGCCA	1 cut(s)	1514
BamHI	GGATCC	2 cut(s)	1941, 2423
BanI	GGYRCC	3 cut(s)	167, 437, 1693
BarI	GAAGNNNNNNTAC	2 cut(s)	1641, 1673
BauI	CACGAG	1 cut(s)	225
BbsI	GAAGAC	2 cut(s)	333, 391
Bbv12I	GWGCWC	5 cut(s)	336, 686, 1108, 1432, 1818
BbvCI	CCTCAGC	1 cut(s)	750
BbvI	GCAGC	4 cut(s)	184, 655, 1746, 1960
BccI	CCATC	7 cut(s)	799, 824, 1030, 1414, 2003, 2306, 2415
BceAI	ACGGC	4 cut(s)	244, 290, 532, 582
BciT130I	CCWGG	5 cut(s)	1176, 1583, 1691, 1806, 2071
BclI	TGATCA	1 cut(s)	1878
BcnI	CCSGG	1 cut(s)	2115
BcoDI	GTCTC	6 cut(s)	344, 352, 1080, 1542, 1675, 2216
BfaI	CTAG	1 cut(s)	1563
BfmI	CTRYAG	2 cut(s)	1098, 1974
BfoI	RGCGCY	3 cut(s)	171, 306, 441
BfuAI	ACCTGC	1 cut(s)	510
BglI	GCCNNNNNGGC	1 cut(s)	1421
BglII	AGATCT	1 cut(s)	2266
BisI	GCNGC	7 cut(s)	166, 198, 412, 465, 644, 1735, 1974
BlsI	GCNGC	7 cut(s)	167, 199, 413, 466, 645, 1736, 1975
Bme1390I	CCNGG	6 cut(s)	1176, 1583, 1691, 1806, 2071, 2115
Bme18I	GGWCC	2 cut(s)	20, 445
BmgBI	CACGTC	2 cut(s)	331, 1293
BmgT120I	GGNCC	4 cut(s)	20, 445, 1687, 1808
BmiI	GGNNCC	7 cut(s)	169, 439, 699, 1695, 1899, 1943, 2425
BmrFI	CCNGG	6 cut(s)	1176, 1583, 1691, 1806, 2071, 2115
BmrI	ACTGGG	2 cut(s)	885, 1694
BmsI	GCATC	9 cut(s)	104, 640, 702, 1140, 1353, 1665, 1690, 2109, 2205
BmuI	ACTGGG	2 cut(s)	885, 1694
BpiI	GAAGAC	2 cut(s)	333, 391
BplI	GAGNNNNNCTC	6 cut(s)	407, 439, 1982, 2014, 2256, 2288
Bpu10I	CCTNAGC	1 cut(s)	750
BpuMI	CCSGG	1 cut(s)	2115
BsaAI	YACGTR	1 cut(s)	205
BsaHI	GRCGYC	2 cut(s)	168, 438
BsaJI	CCNNGG	7 cut(s)	163, 441, 448, 1174, 1805, 1945, 2437
BsaWI	WCCGGW	3 cut(s)	297, 345, 2301
Bsc4I	CCNNNNNNNGG	5 cut(s)	279, 707, 798, 1015, 2055
Bse1I	ACTGG	4 cut(s)	284, 880, 1020, 1689
Bse3DI	GCAATG	5 cut(s)	502, 516, 1957, 2021, 2352
BseAI	TCCGGA	2 cut(s)	297, 2301
BseBI	CCWGG	5 cut(s)	1176, 1583, 1691, 1806, 2071
BseDI	CCNNGG	7 cut(s)	163, 441, 448, 1174, 1805, 1945, 2437
BseLI	CCNNNNNNNGG	5 cut(s)	279, 707, 798, 1015, 2055
BseMI	GCAATG	5 cut(s)	502, 516, 1957, 2021, 2352
BseMII	CTCAG	7 cut(s)	593, 741, 899, 1041, 2013, 2211, 2378
BseNI	ACTGG	4 cut(s)	284, 880, 1020, 1689
BseRI	GAGGAG	1 cut(s)	2270
BseSI	GKGCMC	2 cut(s)	266, 1417
BseXI	GCAGC	4 cut(s)	184, 655, 1746, 1960
BseYI	CCCAGC	2 cut(s)	467, 1320
BsgI	GTGCAG	1 cut(s)	662
Bsh1236I	CGCG	1 cut(s)	165
BshFI	GGCC	6 cut(s)	1424, 1514, 1689, 1810, 1922, 2113
BshNI	GGYRCC	3 cut(s)	167, 437, 1693
BsiHKAI	GWGCWC	5 cut(s)	336, 686, 1108, 1432, 1818
BsiSI	CCGG	6 cut(s)	298, 346, 430, 647, 2114, 2302
BslFI	GGGAC	1 cut(s)	1011
BslI	CCNNNNNNNGG	5 cut(s)	279, 707, 798, 1015, 2055
BsmAI	GTCTC	6 cut(s)	344, 352, 1080, 1542, 1675, 2216
BsmBI	CGTCTC	1 cut(s)	1542
BsmFI	GGGAC	1 cut(s)	1011
BsmI	GAATGC	5 cut(s)	357, 604, 775, 868, 1638
BsnI	GGCC	6 cut(s)	1424, 1514, 1689, 1810, 1922, 2113
Bsp1286I	GDGCHC	7 cut(s)	266, 336, 686, 1108, 1417, 1432, 1818
Bsp13I	TCCGGA	2 cut(s)	297, 2301
Bsp143I	GATC	5 cut(s)	1878, 1941, 1978, 2266, 2423
Bsp19I	CCATGG	2 cut(s)	448, 1945
BspANI	GGCC	6 cut(s)	1424, 1514, 1689, 1810, 1922, 2113
BspCNI	CTCAG	7 cut(s)	592, 742, 898, 1042, 2012, 2212, 2379
BspEI	TCCGGA	2 cut(s)	297, 2301
BspFNI	CGCG	1 cut(s)	165
BspHI	TCATGA	1 cut(s)	2239
BspLI	GGNNCC	7 cut(s)	169, 439, 699, 1695, 1899, 1943, 2425
BspMAI	CTGCAG	2 cut(s)	1102, 1978
BspMI	ACCTGC	1 cut(s)	510
BspPI	GGATC	4 cut(s)	1936, 1949, 2418, 2431
BspQI	GCTCTTC	1 cut(s)	691
BspT107I	GGYRCC	3 cut(s)	167, 437, 1693
BsrDI	GCAATG	5 cut(s)	502, 516, 1957, 2021, 2352
BsrI	ACTGG	4 cut(s)	284, 880, 1020, 1689
BssECI	CCNNGG	7 cut(s)	163, 441, 448, 1174, 1805, 1945, 2437
BssMI	GATC	5 cut(s)	1878, 1941, 1978, 2266, 2423
BssNAI	GTATAC	2 cut(s)	1218, 2019
BssNI	GRCGYC	2 cut(s)	168, 438
BssSI	CACGAG	1 cut(s)	225
BssT1I	CCWWGG	2 cut(s)	448, 1945
Bst1107I	GTATAC	2 cut(s)	1218, 2019
Bst2BI	CACGAG	1 cut(s)	225
Bst2UI	CCWGG	5 cut(s)	1176, 1583, 1691, 1806, 2071
Bst4CI	ACNGT	5 cut(s)	274, 725, 1133, 1300, 2285
Bst6I	CTCTTC	3 cut(s)	691, 1083, 2102
BstACI	GRCGYC	2 cut(s)	168, 438
BstAPI	GCANNNNNTGC	1 cut(s)	986
BstBAI	YACGTR	1 cut(s)	205
BstC8I	GCNNGC	7 cut(s)	211, 409, 416, 1732, 1848, 1889, 1936
BstDEI	CTNAG	9 cut(s)	579, 750, 885, 1050, 1367, 1928, 1999, 2220, 2387
BstDSI	CCRYGG	3 cut(s)	163, 448, 1945
BstEII	GGTNACC	1 cut(s)	1004
BstFNI	CGCG	1 cut(s)	165
BstH2I	RGCGCY	3 cut(s)	171, 306, 441
BstHHI	GCGC	6 cut(s)	170, 305, 440, 991, 2196, 2296
BstKTI	GATC	5 cut(s)	1881, 1944, 1981, 2269, 2426
BstMAI	GTCTC	6 cut(s)	344, 352, 1080, 1542, 1675, 2216
BstMBI	GATC	5 cut(s)	1878, 1941, 1978, 2266, 2423
BstNI	CCWGG	5 cut(s)	1176, 1583, 1691, 1806, 2071
BstNSI	RCATGY	2 cut(s)	1216, 1891
BstPI	GGTNACC	1 cut(s)	1004
BstSCI	CCNGG	6 cut(s)	1174, 1581, 1689, 1804, 2069, 2113
BstSFI	CTRYAG	2 cut(s)	1098, 1974
BstSLI	GKGCMC	2 cut(s)	266, 1417
BstSNI	TACGTA	1 cut(s)	205
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	4 cut(s)	184, 655, 1746, 1960
BstV2I	GAAGAC	2 cut(s)	333, 391
BstX2I	RGATCY	3 cut(s)	1941, 2266, 2423
BstXI	CCANNNNNNTGG	1 cut(s)	1914
BstYI	RGATCY	3 cut(s)	1941, 2266, 2423
BstZ17I	GTATAC	2 cut(s)	1218, 2019
BsuRI	GGCC	6 cut(s)	1424, 1514, 1689, 1810, 1922, 2113
BtgI	CCRYGG	3 cut(s)	163, 448, 1945
BtgZI	GCGATG	1 cut(s)	178
BtrI	CACGTC	2 cut(s)	331, 1293
BtsI	GCAGTG	1 cut(s)	2340
BtsIMutI	CAGTG	3 cut(s)	1013, 2290, 2340
BveI	ACCTGC	1 cut(s)	510
Cac8I	GCNNGC	7 cut(s)	211, 409, 416, 1732, 1848, 1889, 1936
CaiI	CAGNNNCTG	1 cut(s)	1684
CciI	TCATGA	1 cut(s)	2239
CfoI	GCGC	6 cut(s)	170, 305, 440, 991, 2196, 2296
Cfr13I	GGNCC	4 cut(s)	20, 445, 1687, 1808
Cfr42I	CCGCGG	1 cut(s)	166
CseI	GACGC	1 cut(s)	1874
Csp6I	GTAC	4 cut(s)	514, 1475, 2212, 2353
CviQI	GTAC	4 cut(s)	514, 1475, 2212, 2353
DdeI	CTNAG	9 cut(s)	579, 750, 885, 1050, 1367, 1928, 1999, 2220, 2387
DinI	GGCGCC	2 cut(s)	169, 439
DpnI	GATC	5 cut(s)	1880, 1943, 1980, 2268, 2425
DpnII	GATC	5 cut(s)	1878, 1941, 1978, 2266, 2423
DrdI	GACNNNNNNGTC	1 cut(s)	1072
DseDI	GACNNNNNNGTC	1 cut(s)	1072
EaeI	YGGCCR	1 cut(s)	1512
Eam1104I	CTCTTC	3 cut(s)	691, 1083, 2102
EarI	CTCTTC	3 cut(s)	691, 1083, 2102
Eco105I	TACGTA	1 cut(s)	205
Eco130I	CCWWGG	2 cut(s)	448, 1945
Eco47I	GGWCC	2 cut(s)	20, 445
Eco91I	GGTNACC	1 cut(s)	1004
EcoO65I	GGTNACC	1 cut(s)	1004
EcoRI	GAATTC	1 cut(s)	556
EcoRII	CCWGG	5 cut(s)	1174, 1581, 1689, 1804, 2069
EcoT14I	CCWWGG	2 cut(s)	448, 1945
EcoT22I	ATGCAT	1 cut(s)	1638
EgeI	GGCGCC	2 cut(s)	169, 439
EheI	GGCGCC	2 cut(s)	169, 439
ErhI	CCWWGG	2 cut(s)	448, 1945
Esp3I	CGTCTC	1 cut(s)	1542
FalI	AAGNNNNNCTT	2 cut(s)	2253, 2285
FaqI	GGGAC	1 cut(s)	1011
FauI	CCCGC	2 cut(s)	264, 274
FbaI	TGATCA	1 cut(s)	1878
FblI	GTMKAC	2 cut(s)	1217, 2018
Fnu4HI	GCNGC	7 cut(s)	166, 198, 412, 465, 644, 1735, 1974
Fsp4HI	GCNGC	7 cut(s)	166, 198, 412, 465, 644, 1735, 1974
FspBI	CTAG	1 cut(s)	1563
FspI	TGCGCA	1 cut(s)	990
GlaI	GCGC	6 cut(s)	169, 304, 439, 990, 2195, 2295
GluI	GCNGC	7 cut(s)	166, 198, 412, 465, 644, 1735, 1974
GsaI	CCCAGC	2 cut(s)	471, 1324
HaeII	RGCGCY	3 cut(s)	171, 306, 441
HaeIII	GGCC	6 cut(s)	1424, 1514, 1689, 1810, 1922, 2113
HapII	CCGG	6 cut(s)	298, 346, 430, 647, 2114, 2302
HgaI	GACGC	1 cut(s)	1874
HhaI	GCGC	6 cut(s)	170, 305, 440, 991, 2196, 2296
Hin1I	GRCGYC	2 cut(s)	168, 438
Hin6I	GCGC	6 cut(s)	168, 303, 438, 989, 2194, 2294
HinP1I	GCGC	6 cut(s)	168, 303, 438, 989, 2194, 2294
HincII	GTYRAC	2 cut(s)	136, 1986
HindII	GTYRAC	2 cut(s)	136, 1986
HindIII	AAGCTT	1 cut(s)	2227
HinfI	GANTC	8 cut(s)	476, 590, 718, 1259, 1493, 1997, 2173, 2393
HpaI	GTTAAC	1 cut(s)	1986
HpaII	CCGG	6 cut(s)	298, 346, 430, 647, 2114, 2302
Hpy166II	GTNNAC	8 cut(s)	136, 145, 277, 1218, 1296, 1457, 1986, 2019
Hpy188I	TCNGA	4 cut(s)	582, 1051, 1593, 2002
Hpy8I	GTNNAC	8 cut(s)	136, 145, 277, 1218, 1296, 1457, 1986, 2019
HpyAV	CCTTC	7 cut(s)	52, 76, 231, 687, 832, 1157, 2164
HpyCH4III	ACNGT	5 cut(s)	274, 725, 1133, 1300, 2285
HpyCH4IV	ACGT	5 cut(s)	204, 288, 330, 1292, 1551
HpyF3I	CTNAG	9 cut(s)	579, 750, 885, 1050, 1367, 1928, 1999, 2220, 2387
HpySE526I	ACGT	5 cut(s)	204, 288, 330, 1292, 1551
Hsp92I	GRCGYC	2 cut(s)	168, 438
HspAI	GCGC	6 cut(s)	168, 303, 438, 989, 2194, 2294
KasI	GGCGCC	2 cut(s)	167, 437
Kpn2I	TCCGGA	2 cut(s)	297, 2301
Ksp22I	TGATCA	1 cut(s)	1878
KspAI	GTTAAC	1 cut(s)	1986
KspI	CCGCGG	1 cut(s)	166
Kzo9I	GATC	5 cut(s)	1878, 1941, 1978, 2266, 2423
LguI	GCTCTTC	1 cut(s)	691
LmnI	GCTCC	3 cut(s)	223, 300, 1103
Lsp1109I	GCAGC	4 cut(s)	184, 655, 1746, 1960
LweI	GCATC	9 cut(s)	104, 640, 702, 1140, 1353, 1665, 1690, 2109, 2205
MaeI	CTAG	1 cut(s)	1563
MaeII	ACGT	5 cut(s)	204, 288, 330, 1292, 1551
MaeIII	GTNAC	6 cut(s)	871, 958, 1004, 1063, 1288, 1705
MalI	GATC	5 cut(s)	1880, 1943, 1980, 2268, 2425
MboI	GATC	5 cut(s)	1878, 1941, 1978, 2266, 2423
MfeI	CAATTG	2 cut(s)	1516, 1908
MflI	RGATCY	3 cut(s)	1941, 2266, 2423
MhlI	GDGCHC	7 cut(s)	266, 336, 686, 1108, 1417, 1432, 1818
MlsI	TGGCCA	1 cut(s)	1514
MluCI	AATT	9 cut(s)	556, 1140, 1194, 1375, 1461, 1516, 1662, 1908, 2183
MluNI	TGGCCA	1 cut(s)	1514
Mly113I	GGCGCC	2 cut(s)	168, 438
MlyI	GAGTC	3 cut(s)	485, 1991, 2167
MmeI	TCCRAC	3 cut(s)	586, 1974, 2036
Mox20I	TGGCCA	1 cut(s)	1514
Mph1103I	ATGCAT	1 cut(s)	1638
MroI	TCCGGA	2 cut(s)	297, 2301
MscI	TGGCCA	1 cut(s)	1514
MseI	TTAA	9 cut(s)	36, 666, 735, 843, 1143, 1197, 1385, 1985, 2084
MslI	CAYNNNNRTG	9 cut(s)	726, 1134, 1470, 1593, 1641, 1892, 1950, 2345, 2360
Msp20I	TGGCCA	1 cut(s)	1514
MspA1I	CMGCKG	1 cut(s)	165
MspI	CCGG	6 cut(s)	298, 346, 430, 647, 2114, 2302
MspR9I	CCNGG	6 cut(s)	1176, 1583, 1691, 1806, 2071, 2115
MunI	CAATTG	2 cut(s)	1516, 1908
Mva1269I	GAATGC	5 cut(s)	357, 604, 775, 868, 1638
MvaI	CCWGG	5 cut(s)	1176, 1583, 1691, 1806, 2071
MvnI	CGCG	1 cut(s)	165
NarI	GGCGCC	2 cut(s)	168, 438
NciI	CCSGG	1 cut(s)	2115
NcoI	CCATGG	2 cut(s)	448, 1945
NdeII	GATC	5 cut(s)	1878, 1941, 1978, 2266, 2423
NlaIV	GGNNCC	7 cut(s)	169, 439, 699, 1695, 1899, 1943, 2425
NmuCI	GTSAC	3 cut(s)	958, 1063, 1288
NsbI	TGCGCA	1 cut(s)	990
NsiI	ATGCAT	1 cut(s)	1638
NspI	RCATGY	2 cut(s)	1216, 1891
PaeI	GCATGC	1 cut(s)	1891
PagI	TCATGA	1 cut(s)	2239
PaqCI	CACCTGC	1 cut(s)	510
PciI	ACATGT	1 cut(s)	1212
PciSI	GCTCTTC	1 cut(s)	691
PcsI	WCGNNNNNNNCGW	2 cut(s)	201, 557
PctI	GAATGC	5 cut(s)	357, 604, 775, 868, 1638
PfeI	GAWTC	5 cut(s)	590, 718, 1259, 1493, 2393
PflMI	CCANNNNNTGG	2 cut(s)	1015, 2055
PfoI	TCCNGGA	1 cut(s)	2069
PkrI	GCNGC	7 cut(s)	167, 199, 413, 466, 645, 1736, 1975
PleI	GAGTC	3 cut(s)	484, 1991, 2167
PluTI	GGCGCC	2 cut(s)	171, 441
PpsI	GAGTC	3 cut(s)	484, 1991, 2167
Ppu21I	YACGTR	1 cut(s)	205
PscI	ACATGT	1 cut(s)	1212
PshBI	ATTAAT	1 cut(s)	1197
Psp6I	CCWGG	5 cut(s)	1174, 1581, 1689, 1804, 2069
PspEI	GGTNACC	1 cut(s)	1004
PspFI	CCCAGC	2 cut(s)	467, 1320
PspGI	CCWGG	5 cut(s)	1174, 1581, 1689, 1804, 2069
PspN4I	GGNNCC	7 cut(s)	169, 439, 699, 1695, 1899, 1943, 2425
PspPI	GGNCC	4 cut(s)	20, 445, 1687, 1808
PstI	CTGCAG	2 cut(s)	1102, 1978
PstNI	CAGNNNCTG	1 cut(s)	1684
PsuI	RGATCY	3 cut(s)	1941, 2266, 2423
RsaI	GTAC	4 cut(s)	515, 1476, 2213, 2354
RsaNI	GTAC	4 cut(s)	514, 1475, 2212, 2353
RseI	CAYNNNNRTG	9 cut(s)	726, 1134, 1470, 1593, 1641, 1892, 1950, 2345, 2360
SacII	CCGCGG	1 cut(s)	166
SapI	GCTCTTC	1 cut(s)	691
SaqAI	TTAA	9 cut(s)	36, 666, 735, 843, 1143, 1197, 1385, 1985, 2084
SatI	GCNGC	7 cut(s)	166, 198, 412, 465, 644, 1735, 1974
Sau3AI	GATC	5 cut(s)	1878, 1941, 1978, 2266, 2423
Sau96I	GGNCC	4 cut(s)	20, 445, 1687, 1808
SchI	GAGTC	3 cut(s)	485, 1991, 2167
ScrFI	CCNGG	6 cut(s)	1176, 1583, 1691, 1806, 2071, 2115
SduI	GDGCHC	7 cut(s)	266, 336, 686, 1108, 1417, 1432, 1818
SfaNI	GCATC	9 cut(s)	104, 640, 702, 1140, 1353, 1665, 1690, 2109, 2205
SfcI	CTRYAG	2 cut(s)	1098, 1974
SfoI	GGCGCC	2 cut(s)	169, 439
Sfr303I	CCGCGG	1 cut(s)	166
SgrBI	CCGCGG	1 cut(s)	166
SinI	GGWCC	2 cut(s)	20, 445
SmiMI	CAYNNNNRTG	9 cut(s)	726, 1134, 1470, 1593, 1641, 1892, 1950, 2345, 2360
SnaBI	TACGTA	1 cut(s)	205
SphI	GCATGC	1 cut(s)	1891
Sse9I	AATT	9 cut(s)	556, 1140, 1194, 1375, 1461, 1516, 1662, 1908, 2183
SspDI	GGCGCC	2 cut(s)	167, 437
SspMI	CTAG	1 cut(s)	1563
StyD4I	CCNGG	6 cut(s)	1174, 1581, 1689, 1804, 2069, 2113
StyI	CCWWGG	2 cut(s)	448, 1945
TaaI	ACNGT	5 cut(s)	274, 725, 1133, 1300, 2285
TaiI	ACGT	5 cut(s)	207, 291, 333, 1295, 1554
TaqI	TCGA	4 cut(s)	243, 479, 560, 1246
TaqII	GACCGA	1 cut(s)	433
TasI	AATT	9 cut(s)	556, 1140, 1194, 1375, 1461, 1516, 1662, 1908, 2183
TatI	WGTACW	2 cut(s)	1474, 2352
TauI	GCSGC	3 cut(s)	168, 414, 467
TfiI	GAWTC	5 cut(s)	590, 718, 1259, 1493, 2393
Tru1I	TTAA	9 cut(s)	36, 666, 735, 843, 1143, 1197, 1385, 1985, 2084
Tru9I	TTAA	9 cut(s)	36, 666, 735, 843, 1143, 1197, 1385, 1985, 2084
TscAI	CASTG	3 cut(s)	1020, 2290, 2347
TseFI	GTSAC	3 cut(s)	958, 1063, 1288
TseI	GCWGC	4 cut(s)	197, 643, 1734, 1973
Tsp45I	GTSAC	3 cut(s)	958, 1063, 1288
TspDTI	ATGAA	9 cut(s)	851, 1454, 1514, 1611, 1886, 2102, 2228, 2363, 2391
TspRI	CASTG	3 cut(s)	1020, 2290, 2347
Van91I	CCANNNNNTGG	2 cut(s)	1015, 2055
VpaK11BI	GGWCC	2 cut(s)	20, 445
VspI	ATTAAT	1 cut(s)	1197
XapI	RAATTY	4 cut(s)	556, 1375, 1461, 1662
XceI	RCATGY	2 cut(s)	1216, 1891
XmiI	GTMKAC	2 cut(s)	1217, 2018
XspI	CTAG	1 cut(s)	1563
Zsp2I	ATGCAT	1 cut(s)	1638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.