Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0016620

Physical Location & Seq

Genomic Coordinates Forward (+)

36537468 .. 36540005

Gene Structure 2538 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1234400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2538 bp

ATGCTCTGCGCCTCACTGCCTCTAAAACCCTTCACTAAACCCTTCACCAACAGAGCCTTCTTCTCCACTGCGGCGGCACTTTTAAGGCAATGCAAGTCTCTACAGGAAGCCAAGCTCCTACACCAGCGTATCCTGGTCCAAGGCGGCCTCGCACACGCCGCCACCGACCTCATTGCCGCCTACGTCGCCTGCAATGCTCCCTCACAAGCCCTGGGGTTGCTCCAACGCCTTGTGCCGTGCCCGTGGACTGTTTTCTGGTGGAATGTGCTTATACGGACCGCCGTGGGTTCTGGATTACTTCATGACGTGCTTAATCTCTACCATCGGATGCAAATGCTTGGGTGGCGGCCTGACCATTATACTTACCCCTTTGTTCTCAAGGCTTGCGGCGAGCTTCGGTCCTTCTGGCGAGGATCGTCGGTTCATGCCTCTGTGTTCGCAAATGGGTTTGAGTCAAATGTGTTTGTTTGCAATGCGTTGGTTGCTATGTATGGCCGCTGCGGTGCATTGGACGATGCCCGTAAGGTGTTCGATGAATTGTCTGAAAGGGGGATTGGGGACGCTGTGTCGTGGAATTCGATTGTGGCGGCTTATGTTCAAAGTGGGGATTCGAGTAATGTGCTTAAAATGTTTGATCGGATGATGGGTGATTTTAGTGTGCGCCCAGATGCTGTTAGTATAGTTAATGTTCTTCCTGCTTGTGCTTCGGATGGTAAGCCGATGTGGGGTAAGCAGATTCATGGTTATGCTATTAGAAATGGTTTATTTGAAGATGTTTTTGTGGGTAATGCCGTGGTTGATATGTATGCTAAGTGTGAGATGATGGAAGAGGCACGCAAGGTATTTGATAGGATGAAGGTAAAGGATGTCGTTTCGTGGAATGCAATGGTTACCGGGTATTCTCAGATTGGTAAATATGAGGATGCCATTGGTTTGTTTGAGAAGATGGGGGAGGAAAATATTGAGTTGAACGTTGTCACTTGGAGTGCTGTGATTGCAGGGTATGCTCAGAGGGGACATGGTTACGAAGCGCTGGATGTTTTTCGGCAAATGCAGGCTTGTAGCTCCAAGCCAAACATTGTTACTCTTGTGTCTCTTCTTTCAGGGTGTGCCTCTGCAGGAGCATTGATTCAAGGAAAAGAAACCCATTGTTATGCAATAAAATGGATCCTGGATTTAGAAGGAAATGACCCTGGAAATGATATGATGGTAATTAATGGTCTGATTGACATGTATACCAAATGCAAGAGTCCCAAAGTTGCTCGAATGATGTTTGATAATATTGAACCAAAGACAAGGAATGTGGCGACTTGGACTGTGATGATCGGTGGGTATGCACAGCATGGGGAAGCTAATGAAGCATTAGAACTATTGTATCAGATGCTGAGAAAGGATTGCTCTCTAAAGCCAAATTCTTTTACTATATCTTGTGCCCTGATGGCCTGTGCTCGTCTGGGGGCACTGAGGTCGGGTAAACAAATTCATGCTTTTATAGTACGCAATCAGTGTGATTCTGGGAAGCTGTTTGTGGCCAATTGCCTCGTTGATATGTATTCAAAATCCGGAGACATTGATGCTGCTAGAGTTGTGTTTGATTACATGCAACAAAGAAATGCTGTTTCTTGGACTTCACTCATGACGGGCTATGGAATGCACGGTCGTGGTGAAGAAGCCCTACAAGTTTTTGGTGGGATGATGGGTGTGGGGCTGGTGCCTGATGGTGTAACTTTTGTTGTTGTCCTGTATGCTTGCAGCCATTCTGGAATGGTCGATGAAGGAACAAGATACTTCAACAGCATGAGCCAGGATTTTGGGATTGTTCCTGGGGCAGAACACTATGCTTGTATGGTTGACCTCTTGGGTCGTGCTGGTCACTTGGACGACGCGTTGAAGATGATCAAAGACATGCCTATGCAACCAACCCCAATTGTATGGGTGGCCTTGCTCAGTGCGTGCAGGACGCATGGAAATGTTGAACTAGGTGAATATGCTGCACAGCGGTTATCAGAGATTGAGTCAGAGAATGATGGATCATATACATTGCTTTCGAACATATACGCCAATGCCAGACGTTGGAAAGACGTGGCCAAAATCCGGTCGTTAATGAGAAATACTGGCATCAAGAAGAGGCCCGGTTGCAGTTGGGTGCAAGGTAAGAAAGGCAACGCAACATTCTTTGTGGGCGATAGGACTCATCCAATGTCTCAAGAAGTATATGAGAAACTTGCAGAATTGATCGAACGCATCAAAGACATGGGATACGTTGCCGAGACAAGCTTTGCGCTTCACGACGTCGATGATGAGGAGAAAGGAGACCTTCTTTTCGAGCATAGCGAGAAGTTGGCTCTGGCCTACGCAATCCTAACTACGCCGGCAGGCCAACCTATCCGGATCACCAAGAACTTACGCGTCTGCGGTGATTGCCACAATGCCATTACCTACGTCTCCATGATTGTGGAGCATGAAATCATATTGAGAGACTCAAGTCGATTTCATCATTTCAAGAAAGGATCCTGCTCCTGCCGAGGCTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

846

Amino Acids

93.73

Weight (kDa)

7.06

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	84 - 129	3.8e-06	PPR repeat family
PPR_2	PF13041	288 - 329	3.5e-10	PPR repeat family
PPR	PF01535	291 - 321	2.1e-07	PPR repeat
PPR_3	PF13812	312 - 370	1.5e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	324 - 371	9e-10	PPR repeat family
PPR_2	PF13041	433 - 484	5.9e-09	PPR repeat family
PPR	PF01535	437 - 466	2.1e-07	PPR repeat
PPR_2	PF13041	538 - 585	1e-07	PPR repeat family
PPR	PF01535	540 - 569	6.4e-06	PPR repeat
E_motif	PF20431	655 - 717	1.5e-32	E motif
Eplus_motif	PF20430	723 - 749	1.8e-10	E+ motif
DYW_deaminase	PF14432	753 - 845	1.9e-45	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16860
fragaria_vesca	FvH4_5g33150
malus_domestica	MD06G1234400.v1.1
prunus_persica	Prupe.7G002900_v2.0.a1
pyrus_communis	pycom06g20910
rosa_chinensis	RchiOBHm_Chr7g0231411
rosa_laevigata	RLG00000001419
rosa_multiflora	Rmu_sc0003396.1_g000030 Rmu_sc0010066.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229340
rosa_rugosa	Rorug07G0266400
rosa_samantha	Rh7BG395100 Rh7CG440800
rosa_wichuraiana	Rw7G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	2295
AccB1I	GGYRCC	1 cut(s)	1711
AccB7I	CCANNNNNTGG	1 cut(s)	2073
AccI	GTMKAC	1 cut(s)	1235
AccII	CGCG	2 cut(s)	1886, 2409
AccIII	TCCGGA	2 cut(s)	1562, 2388
AclI	AACGTT	1 cut(s)	972
AclWI	GGATC	7 cut(s)	421, 1162, 1175, 2038, 2399, 2505, 2518
AcoI	YGGCCR	3 cut(s)	493, 1530, 2085
AcsI	RAATTY	3 cut(s)	574, 1411, 1479
AcyI	GRCGYC	1 cut(s)	2292
AfaI	GTAC	1 cut(s)	1497
AfeI	AGCGCT	1 cut(s)	1032
AfiI	CCNNNNNNNGG	3 cut(s)	725, 2073, 2094
AflIII	ACRYGT	3 cut(s)	1230, 1884, 2407
AhdI	GACNNNNNGTC	1 cut(s)	565
AjiI	CACGTC	2 cut(s)	307, 2083
AjnI	CCWGG	6 cut(s)	132, 210, 1170, 1192, 1803, 1822
AjuI	GAANNNNNNNTTGG	4 cut(s)	41, 73, 537, 569
AleI	CACNNNNGTG	1 cut(s)	1659
AloI	GAACNNNNNNTCC	2 cut(s)	405, 437
AluBI	AGCT	6 cut(s)	115, 394, 1065, 1352, 1522, 2277
AluI	AGCT	6 cut(s)	115, 394, 1065, 1352, 1522, 2277
Alw21I	GWGCWC	1 cut(s)	1450
Alw26I	GTCTC	8 cut(s)	102, 1098, 1560, 2208, 2264, 2307, 2449, 2472
AlwI	GGATC	7 cut(s)	421, 1162, 1175, 2038, 2399, 2505, 2518
AlwNI	CAGNNNCTG	2 cut(s)	671, 1384
Aor13HI	TCCGGA	2 cut(s)	1562, 2388
Aor51HI	AGCGCT	1 cut(s)	1032
ApeKI	GCWGC	4 cut(s)	498, 1577, 1752, 1991
ApoI	RAATTY	3 cut(s)	574, 1411, 1479
ArsI	GACNNNNNNTTYG	2 cut(s)	2306, 2338
AseI	ATTAAT	1 cut(s)	1215
AspLEI	GCGC	4 cut(s)	11, 663, 1033, 2284
AspS9I	GGNCC	4 cut(s)	136, 276, 399, 2130
AsuC2I	CCSGG	2 cut(s)	895, 2133
AsuHPI	GGTGA	6 cut(s)	37, 659, 1676, 1994, 2386, 2429
AsuII	TTCGAA	1 cut(s)	2048
AvaII	GGWCC	3 cut(s)	136, 276, 399
BaeGI	GKGCMC	3 cut(s)	242, 1435, 1462
BaeI	ACNNNNGTAYC	4 cut(s)	112, 145, 1358, 1391
BalI	TGGCCA	2 cut(s)	1532, 2087
BamHI	GGATCC	2 cut(s)	1167, 2510
BanI	GGYRCC	1 cut(s)	1711
BarI	GAAGNNNNNNTAC	2 cut(s)	1659, 1691
Bbv12I	GWGCWC	1 cut(s)	1450
BbvI	GCAGC	4 cut(s)	485, 1564, 1764, 1978
BceAI	ACGGC	3 cut(s)	220, 266, 776
BcgI	CGANNNNNNTGC	6 cut(s)	155, 189, 601, 635, 1449, 1483
BciT130I	CCWGG	6 cut(s)	134, 212, 1172, 1194, 1805, 1824
BciVI	GTATCC	2 cut(s)	140, 2252
BclI	TGATCA	1 cut(s)	1896
BcnI	CCSGG	2 cut(s)	895, 2133
BcoDI	GTCTC	8 cut(s)	102, 1098, 1560, 2208, 2264, 2307, 2449, 2472
BfaI	CTAG	2 cut(s)	1581, 1979
BfmI	CTRYAG	2 cut(s)	101, 1116
BfoI	RGCGCY	1 cut(s)	1034
BfuI	GTATCC	2 cut(s)	140, 2252
BglI	GCCNNNNNGGC	1 cut(s)	1439
Bme1390I	CCNGG	8 cut(s)	134, 212, 895, 1172, 1194, 1805, 1824, 2133
Bme18I	GGWCC	3 cut(s)	136, 276, 399
BmeRI	GACNNNNNGTC	1 cut(s)	565
BmgBI	CACGTC	2 cut(s)	307, 2083
BmgT120I	GGNCC	4 cut(s)	136, 276, 399, 2130
BmiI	GGNNCC	3 cut(s)	1169, 1713, 2512
BmrFI	CCNGG	8 cut(s)	134, 212, 895, 1172, 1194, 1805, 1824, 2133
BmsI	GCATC	8 cut(s)	318, 505, 658, 913, 1371, 1564, 2127, 2253
BoxI	GACNNNNGTC	1 cut(s)	2484
Bpu14I	TTCGAA	1 cut(s)	2048
BpuEI	CTTGAG	3 cut(s)	362, 2190, 2467
BpuMI	CCSGG	2 cut(s)	895, 2133
BsaHI	GRCGYC	1 cut(s)	2292
BsaI	GGTCTC	1 cut(s)	2307
BsaJI	CCNNGG	9 cut(s)	139, 210, 211, 242, 282, 792, 1192, 1823, 2524
BsaWI	WCCGGW	3 cut(s)	1562, 2094, 2388
Bsc4I	CCNNNNNNNGG	3 cut(s)	725, 2073, 2094
Bse118I	RCCGGY	1 cut(s)	2371
Bse1I	ACTGG	1 cut(s)	2119
Bse3DI	GCAATG	6 cut(s)	95, 171, 199, 478, 891, 2039
BseAI	TCCGGA	2 cut(s)	1562, 2388
BseBI	CCWGG	6 cut(s)	134, 212, 1172, 1194, 1805, 1824
BseDI	CCNNGG	9 cut(s)	139, 210, 211, 242, 282, 792, 1192, 1823, 2524
BseGI	GGATG	9 cut(s)	333, 645, 715, 858, 871, 928, 1042, 1698, 2194
BseLI	CCNNNNNNNGG	3 cut(s)	725, 2073, 2094
BseMI	GCAATG	6 cut(s)	95, 171, 199, 478, 891, 2039
BseMII	CTCAG	5 cut(s)	917, 1022, 1376, 1454, 1960
BseNI	ACTGG	1 cut(s)	2119
BseRI	GAGGAG	1 cut(s)	2318
BseSI	GKGCMC	3 cut(s)	242, 1435, 1462
BseXI	GCAGC	4 cut(s)	485, 1564, 1764, 1978
BsgI	GTGCAG	2 cut(s)	1975, 1977
Bsh1236I	CGCG	2 cut(s)	1886, 2409
Bsh1285I	CGRYCG	2 cut(s)	1660, 2099
BshNI	GGYRCC	1 cut(s)	1711
BsiEI	CGRYCG	2 cut(s)	1660, 2099
BsiHKAI	GWGCWC	1 cut(s)	1450
BsiSI	CCGG	6 cut(s)	894, 1563, 2095, 2133, 2372, 2389
BslFI	GGGAC	3 cut(s)	572, 1029, 1236
BslI	CCNNNNNNNGG	3 cut(s)	725, 2073, 2094
BsmAI	GTCTC	8 cut(s)	102, 1098, 1560, 2208, 2264, 2307, 2449, 2472
BsmBI	CGTCTC	1 cut(s)	2449
BsmFI	GGGAC	3 cut(s)	572, 1029, 1236
BsmI	GAATGC	2 cut(s)	886, 1656
Bso31I	GGTCTC	1 cut(s)	2307
Bsp119I	TTCGAA	1 cut(s)	2048
Bsp1286I	GDGCHC	4 cut(s)	242, 1435, 1450, 1462
Bsp13I	TCCGGA	2 cut(s)	1562, 2388
Bsp143I	GATC	9 cut(s)	413, 634, 1167, 1323, 1896, 2030, 2235, 2391, 2510
BspCNI	CTCAG	5 cut(s)	916, 1021, 1377, 1455, 1959
BspEI	TCCGGA	2 cut(s)	1562, 2388
BspFNI	CGCG	2 cut(s)	1886, 2409
BspHI	TCATGA	2 cut(s)	301, 1635
BspLI	GGNNCC	3 cut(s)	1169, 1713, 2512
BspMAI	CTGCAG	1 cut(s)	1120
BspPI	GGATC	7 cut(s)	421, 1162, 1175, 2038, 2399, 2505, 2518
BspT104I	TTCGAA	1 cut(s)	2048
BspT107I	GGYRCC	1 cut(s)	1711
BspTNI	GGTCTC	1 cut(s)	2307
BsrDI	GCAATG	6 cut(s)	95, 171, 199, 478, 891, 2039
BsrFI	RCCGGY	1 cut(s)	2371
BsrI	ACTGG	1 cut(s)	2119
BssAI	RCCGGY	1 cut(s)	2371
BssECI	CCNNGG	9 cut(s)	139, 210, 211, 242, 282, 792, 1192, 1823, 2524
BssMI	GATC	9 cut(s)	413, 634, 1167, 1323, 1896, 2030, 2235, 2391, 2510
BssNAI	GTATAC	1 cut(s)	1236
BssNI	GRCGYC	1 cut(s)	2292
BssT1I	CCWWGG	1 cut(s)	139
Bst1107I	GTATAC	1 cut(s)	1236
Bst2UI	CCWGG	6 cut(s)	134, 212, 1172, 1194, 1805, 1824
Bst4CI	ACNGT	3 cut(s)	250, 1318, 1658
Bst6I	CTCTTC	3 cut(s)	822, 1101, 2120
BstACI	GRCGYC	1 cut(s)	2292
BstAPI	GCANNNNNTGC	1 cut(s)	1004
BstBI	TTCGAA	1 cut(s)	2048
BstC8I	GCNNGC	9 cut(s)	190, 385, 392, 835, 1056, 1750, 1954, 2373, 2377
BstDEI	CTNAG	6 cut(s)	810, 903, 1008, 1385, 1463, 1946
BstDSI	CCRYGG	3 cut(s)	242, 282, 792
BstEII	GGTNACC	1 cut(s)	889
BstF5I	GGATG	9 cut(s)	333, 645, 715, 858, 871, 928, 1042, 1698, 2194
BstFNI	CGCG	2 cut(s)	1886, 2409
BstH2I	RGCGCY	1 cut(s)	1034
BstHHI	GCGC	4 cut(s)	11, 663, 1033, 2284
BstKTI	GATC	9 cut(s)	416, 637, 1170, 1326, 1899, 2033, 2238, 2394, 2513
BstMAI	GTCTC	8 cut(s)	102, 1098, 1560, 2208, 2264, 2307, 2449, 2472
BstMBI	GATC	9 cut(s)	413, 634, 1167, 1323, 1896, 2030, 2235, 2391, 2510
BstMCI	CGRYCG	2 cut(s)	1660, 2099
BstNI	CCWGG	6 cut(s)	134, 212, 1172, 1194, 1805, 1824
BstNSI	RCATGY	3 cut(s)	1234, 1603, 1909
BstPAI	GACNNNNGTC	1 cut(s)	2484
BstPI	GGTNACC	1 cut(s)	889
BstSCI	CCNGG	8 cut(s)	132, 210, 893, 1170, 1192, 1803, 1822, 2131
BstSFI	CTRYAG	2 cut(s)	101, 1116
BstSLI	GKGCMC	3 cut(s)	242, 1435, 1462
BstUI	CGCG	2 cut(s)	1886, 2409
BstV1I	GCAGC	4 cut(s)	485, 1564, 1764, 1978
BstX2I	RGATCY	2 cut(s)	1167, 2510
BstXI	CCANNNNNNTGG	3 cut(s)	1811, 1932, 2455
BstYI	RGATCY	2 cut(s)	1167, 2510
BstZ17I	GTATAC	1 cut(s)	1236
BsuI	GTATCC	2 cut(s)	140, 2252
BtgI	CCRYGG	3 cut(s)	242, 282, 792
BtrI	CACGTC	2 cut(s)	307, 2083
BtsCI	GGATG	9 cut(s)	333, 645, 715, 858, 871, 928, 1042, 1698, 2194
BtsI	GCAGTG	2 cut(s)	14, 66
BtsIMutI	CAGTG	5 cut(s)	14, 66, 1460, 1511, 1954
Cac8I	GCNNGC	9 cut(s)	190, 385, 392, 835, 1056, 1750, 1954, 2373, 2377
CaiI	CAGNNNCTG	2 cut(s)	671, 1384
CciI	TCATGA	2 cut(s)	301, 1635
CfoI	GCGC	4 cut(s)	11, 663, 1033, 2284
Cfr10I	RCCGGY	1 cut(s)	2371
Cfr13I	GGNCC	4 cut(s)	136, 276, 399, 2130
CpoI	CGGWCCG	1 cut(s)	276
CseI	GACGC	4 cut(s)	569, 1892, 1969, 2398
Csp6I	GTAC	1 cut(s)	1496
CspCI	CAANNNNNGTGG	2 cut(s)	1284, 1319
CspI	CGGWCCG	1 cut(s)	276
CviQI	GTAC	1 cut(s)	1496
DdeI	CTNAG	6 cut(s)	810, 903, 1008, 1385, 1463, 1946
DpnI	GATC	9 cut(s)	415, 636, 1169, 1325, 1898, 2032, 2237, 2393, 2512
DpnII	GATC	9 cut(s)	413, 634, 1167, 1323, 1896, 2030, 2235, 2391, 2510
DriI	GACNNNNNGTC	1 cut(s)	565
EaeI	YGGCCR	3 cut(s)	493, 1530, 2085
Eam1104I	CTCTTC	3 cut(s)	822, 1101, 2120
Eam1105I	GACNNNNNGTC	1 cut(s)	565
EarI	CTCTTC	3 cut(s)	822, 1101, 2120
Eco130I	CCWWGG	1 cut(s)	139
Eco31I	GGTCTC	1 cut(s)	2307
Eco47I	GGWCC	3 cut(s)	136, 276, 399
Eco47III	AGCGCT	1 cut(s)	1032
Eco91I	GGTNACC	1 cut(s)	889
EcoO65I	GGTNACC	1 cut(s)	889
EcoRI	GAATTC	1 cut(s)	574
EcoRII	CCWGG	6 cut(s)	132, 210, 1170, 1192, 1803, 1822
EcoT14I	CCWWGG	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	139
Esp3I	CGTCTC	1 cut(s)	2449
FalI	AAGNNNNNCTT	2 cut(s)	2301, 2333
FaqI	GGGAC	3 cut(s)	572, 1029, 1236
FbaI	TGATCA	1 cut(s)	1896
FblI	GTMKAC	1 cut(s)	1235
FokI	GGATG	9 cut(s)	340, 652, 722, 865, 878, 935, 1049, 1705, 2181
FspBI	CTAG	2 cut(s)	1581, 1979
GlaI	GCGC	4 cut(s)	10, 662, 1032, 2283
HaeII	RGCGCY	1 cut(s)	1034
HapII	CCGG	6 cut(s)	894, 1563, 2095, 2133, 2372, 2389
HgaI	GACGC	4 cut(s)	569, 1892, 1969, 2398
HhaI	GCGC	4 cut(s)	11, 663, 1033, 2284
Hin1I	GRCGYC	1 cut(s)	2292
Hin6I	GCGC	4 cut(s)	9, 661, 1031, 2282
HinP1I	GCGC	4 cut(s)	9, 661, 1031, 2282
HincII	GTYRAC	1 cut(s)	1852
HindII	GTYRAC	1 cut(s)	1852
HindIII	AAGCTT	1 cut(s)	2275
HinfI	GANTC	9 cut(s)	452, 608, 736, 1129, 1249, 1511, 2015, 2191, 2480
HpaII	CCGG	6 cut(s)	894, 1563, 2095, 2133, 2372, 2389
HphI	GGTGA	6 cut(s)	37, 659, 1676, 1994, 2386, 2429
Hpy166II	GTNNAC	4 cut(s)	246, 1236, 1475, 1852
Hpy8I	GTNNAC	4 cut(s)	246, 1236, 1475, 1852
Hpy99I	CGWCG	5 cut(s)	188, 421, 1886, 2294, 2297
HpyAV	CCTTC	8 cut(s)	40, 52, 67, 412, 850, 1175, 1769, 2327
HpyCH4III	ACNGT	3 cut(s)	250, 1318, 1658
HpyCH4IV	ACGT	8 cut(s)	183, 306, 972, 2071, 2082, 2262, 2292, 2442
HpyF3I	CTNAG	6 cut(s)	810, 903, 1008, 1385, 1463, 1946
HpySE526I	ACGT	8 cut(s)	183, 306, 972, 2071, 2082, 2262, 2292, 2442
Hsp92I	GRCGYC	1 cut(s)	2292
HspAI	GCGC	4 cut(s)	9, 661, 1031, 2282
Kpn2I	TCCGGA	2 cut(s)	1562, 2388
KroI	GCCGGC	1 cut(s)	2371
KroNI	GCCGGC	1 cut(s)	2373
Ksp22I	TGATCA	1 cut(s)	1896
Kzo9I	GATC	9 cut(s)	413, 634, 1167, 1323, 1896, 2030, 2235, 2391, 2510
LmnI	GCTCC	7 cut(s)	120, 202, 225, 1070, 1121, 2458, 2522
Lsp1109I	GCAGC	4 cut(s)	485, 1564, 1764, 1978
LweI	GCATC	8 cut(s)	318, 505, 658, 913, 1371, 1564, 2127, 2253
MaeI	CTAG	2 cut(s)	1581, 1979
MaeII	ACGT	8 cut(s)	183, 306, 972, 2071, 2082, 2262, 2292, 2442
MaeIII	GTNAC	6 cut(s)	889, 976, 1022, 1081, 1723, 1871
MalI	GATC	9 cut(s)	415, 636, 1169, 1325, 1898, 2032, 2237, 2393, 2512
MboI	GATC	9 cut(s)	413, 634, 1167, 1323, 1896, 2030, 2235, 2391, 2510
MboII	GAAGA	9 cut(s)	52, 683, 782, 839, 955, 1088, 1679, 1903, 2137
MfeI	CAATTG	2 cut(s)	1534, 1926
MflI	RGATCY	2 cut(s)	1167, 2510
MhlI	GDGCHC	4 cut(s)	242, 1435, 1450, 1462
MlsI	TGGCCA	2 cut(s)	1532, 2087
MluCI	AATT	8 cut(s)	536, 574, 1212, 1411, 1479, 1534, 1926, 2231
MluI	ACGCGT	2 cut(s)	1884, 2407
MluNI	TGGCCA	2 cut(s)	1532, 2087
MlyI	GAGTC	5 cut(s)	461, 1258, 2024, 2185, 2474
MmeI	TCCRAC	2 cut(s)	247, 2054
Mox20I	TGGCCA	2 cut(s)	1532, 2087
MroI	TCCGGA	2 cut(s)	1562, 2388
MroNI	GCCGGC	1 cut(s)	2371
MscI	TGGCCA	2 cut(s)	1532, 2087
MseI	TTAA	6 cut(s)	83, 312, 624, 684, 1215, 2102
MslI	CAYNNNNRTG	6 cut(s)	744, 1152, 1659, 1910, 1968, 2453
Msp20I	TGGCCA	2 cut(s)	1532, 2087
MspA1I	CMGCKG	2 cut(s)	498, 1999
MspI	CCGG	6 cut(s)	894, 1563, 2095, 2133, 2372, 2389
MspR9I	CCNGG	8 cut(s)	134, 212, 895, 1172, 1194, 1805, 1824, 2133
MunI	CAATTG	2 cut(s)	1534, 1926
Mva1269I	GAATGC	2 cut(s)	886, 1656
MvaI	CCWGG	6 cut(s)	134, 212, 1172, 1194, 1805, 1824
MvnI	CGCG	2 cut(s)	1886, 2409
NaeI	GCCGGC	1 cut(s)	2373
NciI	CCSGG	2 cut(s)	895, 2133
NdeII	GATC	9 cut(s)	413, 634, 1167, 1323, 1896, 2030, 2235, 2391, 2510
NgoMIV	GCCGGC	1 cut(s)	2371
NlaIV	GGNNCC	3 cut(s)	1169, 1713, 2512
NmeAIII	GCCGAG	1 cut(s)	2293
NmuCI	GTSAC	2 cut(s)	976, 1871
NspI	RCATGY	3 cut(s)	1234, 1603, 1909
NspV	TTCGAA	1 cut(s)	2048
OliI	CACNNNNGTG	1 cut(s)	1659
PagI	TCATGA	2 cut(s)	301, 1635
PasI	CCCWGGG	1 cut(s)	211
PciI	ACATGT	1 cut(s)	1230
PcsI	WCGNNNNNNNCGW	3 cut(s)	162, 575, 2331
PctI	GAATGC	2 cut(s)	886, 1656
PdiI	GCCGGC	1 cut(s)	2373
PfeI	GAWTC	4 cut(s)	608, 736, 1129, 1511
PflMI	CCANNNNNTGG	1 cut(s)	2073
PfoI	TCCNGGA	1 cut(s)	1170
PleI	GAGTC	5 cut(s)	460, 1257, 2023, 2185, 2474
PpsI	GAGTC	5 cut(s)	460, 1257, 2023, 2185, 2474
PscI	ACATGT	1 cut(s)	1230
PshAI	GACNNNNGTC	1 cut(s)	2484
PshBI	ATTAAT	1 cut(s)	1215
Psp1406I	AACGTT	1 cut(s)	972
Psp6I	CCWGG	6 cut(s)	132, 210, 1170, 1192, 1803, 1822
PspEI	GGTNACC	1 cut(s)	889
PspGI	CCWGG	6 cut(s)	132, 210, 1170, 1192, 1803, 1822
PspN4I	GGNNCC	3 cut(s)	1169, 1713, 2512
PspPI	GGNCC	4 cut(s)	136, 276, 399, 2130
PstI	CTGCAG	1 cut(s)	1120
PstNI	CAGNNNCTG	2 cut(s)	671, 1384
PsuI	RGATCY	2 cut(s)	1167, 2510
RsaI	GTAC	1 cut(s)	1497
RsaNI	GTAC	1 cut(s)	1496
RseI	CAYNNNNRTG	6 cut(s)	744, 1152, 1659, 1910, 1968, 2453
Rsr2I	CGGWCCG	1 cut(s)	276
RsrII	CGGWCCG	1 cut(s)	276
SaqAI	TTAA	6 cut(s)	83, 312, 624, 684, 1215, 2102
Sau3AI	GATC	9 cut(s)	413, 634, 1167, 1323, 1896, 2030, 2235, 2391, 2510
Sau96I	GGNCC	4 cut(s)	136, 276, 399, 2130
SchI	GAGTC	5 cut(s)	461, 1258, 2024, 2185, 2474
ScrFI	CCNGG	8 cut(s)	134, 212, 895, 1172, 1194, 1805, 1824, 2133
SduI	GDGCHC	4 cut(s)	242, 1435, 1450, 1462
SfaNI	GCATC	8 cut(s)	318, 505, 658, 913, 1371, 1564, 2127, 2253
SfcI	CTRYAG	2 cut(s)	101, 1116
SfuI	TTCGAA	1 cut(s)	2048
SinI	GGWCC	3 cut(s)	136, 276, 399
SmiMI	CAYNNNNRTG	6 cut(s)	744, 1152, 1659, 1910, 1968, 2453
SmlI	CTYRAG	3 cut(s)	377, 2205, 2482
SmoI	CTYRAG	3 cut(s)	377, 2205, 2482
Sse9I	AATT	8 cut(s)	536, 574, 1212, 1411, 1479, 1534, 1926, 2231
SspI	AATATT	2 cut(s)	961, 1282
SspMI	CTAG	2 cut(s)	1581, 1979
StyD4I	CCNGG	8 cut(s)	132, 210, 893, 1170, 1192, 1803, 1822, 2131
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	3 cut(s)	250, 1318, 1658
TaiI	ACGT	8 cut(s)	186, 309, 975, 2074, 2085, 2265, 2295, 2445
TaqII	GACCGA	1 cut(s)	387
TasI	AATT	8 cut(s)	536, 574, 1212, 1411, 1479, 1534, 1926, 2231
TauI	GCSGC	9 cut(s)	74, 77, 147, 161, 179, 349, 390, 498, 590
TfiI	GAWTC	4 cut(s)	608, 736, 1129, 1511
Tru1I	TTAA	6 cut(s)	83, 312, 624, 684, 1215, 2102
Tru9I	TTAA	6 cut(s)	83, 312, 624, 684, 1215, 2102
TscAI	CASTG	5 cut(s)	21, 73, 1467, 1511, 1954
TseFI	GTSAC	2 cut(s)	976, 1871
TseI	GCWGC	4 cut(s)	498, 1577, 1752, 1991
Tsp45I	GTSAC	2 cut(s)	976, 1871
TspGWI	ACGGA	1 cut(s)	289
TspRI	CASTG	5 cut(s)	21, 73, 1467, 1511, 1954
Van91I	CCANNNNNTGG	1 cut(s)	2073
VpaK11BI	GGWCC	3 cut(s)	136, 276, 399
VspI	ATTAAT	1 cut(s)	1215
XapI	RAATTY	3 cut(s)	574, 1411, 1479
XceI	RCATGY	3 cut(s)	1234, 1603, 1909
XmiI	GTMKAC	1 cut(s)	1235
XspI	CTAG	2 cut(s)	1581, 1979
ZraI	GACGTC	1 cut(s)	2293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.