Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0016620

Physical Location & Seq

Genomic Coordinates Forward (+)

23938686 .. 23941465

Gene Structure 2780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g33150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2553 bp

ATGCTTCACAGTCTTCCTAAACCCTCCCTTAAACCCTTGACCACCAAAATCACCAAAGCCTTCTTCTCCACCACACCAACACCAACACTTCTTCTCAAACAATGCAAGTCCTTACTCCAAGTCAAGCTCCTCCACCAGCACATCCTCGTCTGCGGCGGCGTCTCCCACTCTCTGACCCACCTCATCGCCGCCTACTTATCCTTCAACGCTCCCTCACACGCCTTGTCCCTCCTCGAACGCCTCGCCACGCCGCGCCCCGCCGCCGTTTACTGGTGGAACGTCCTCATCCGTAGCGCCGTGCGTTCCGGGTTTCTTGAACACGTGCTCTCTCTCTATTCTAGAATGCAGAGACTTGGCTGGAAGCCGGATCATTACACTTACCCTTTTGTTTTCAAAGCCTGCGGCGAGCTGGGCTCGCTCCGGCGAGGCGAGGCGGCTCACGGGGCGGTGTGTGTTGGTGGGTTTGAGTCGAATGTGTTTGTTTGCAATGCGATGGTGGCAATGTATGGGAGATGTGGGGGTTTGGGAGATGCACGGAAGGTGTTTGATGAAATGCTTGAGAGAGGGGTAGAGGATATTGTGTCGTGGAATTCGATTATGGCGGTTTATGCGCAGAGTGGGGATTCGGGGAATGCGGTTGAGGTTTTTGGTTTGATGGTGGGTGGGTTTGGTGTGAACCCGGATGCAGTTAGCTTGGTTAATGTACTTCCTTTGTGCGCGTCGCTTGGGGAAGTGAAGTGGGGGATGCAGATTCATGGTTATGGTGTTAAGAGCGGGTTGGTGGAGGATGTGTTTGTGGGGAATTCGGTTATTGATATGTATGCAAAGTGTGGGATGATGGATGAGGCGAACAATGTGTTTGATAGGATGAGGATTAAGGATGTGGTTTCGTGGAATGCTATGGTTACGGGGTATTCTCAGATTGGTAGGTTTGAGAATGCTATTGGTTTGTTTGAAAAGATGAGGGAGGAGAAGATTGAGTTGAATGTTGTCACTTGGAGTGCTGTGATTGCAGGGTATGCGCAGAGGGGACATGGTTATCAAGCAGTGGATGTGTTTCGGGAAATGATGGCTTGTGGGTCTGAGCCGAATGTTGTCACCCTTGTGTCTCTTCTTTCAGGTTGTGCCTCTGCAGGAGCGCTAAATCTTGGTAGAGAAACTCACGGTTATGCAATTAAATGGATGCTGGAGTTGGAAGGAAATGACCCTGGAAATGATATGATGGTAATTAATGGTTTGATTGACATGTATACTAAATGCAAGAGTGTCAAACTTGCTAGAACGATTTTTGATTCTCTTTCACCAGATACAAAAAGTGTGGTGACTTGGACAGTGATGATCGGTGGGTATGCCCAGCACGGTGAAGCAAATGAGGCACTTGAACTTTTCTACCAGATGCTAAGACAGGATTTCAACTTAAAGCCAAATGGTTTTACTATATGTTGTGCCCTGATGTCCTGTGCTCGTCTTGGCGCACTGAGGTCTGGTAAAGAAATTCATGCTTATATACTACGCAATCAATATGATTCTATGAAGTTGTATGTGGCCAATTGCCTTATTGATATGTATTCTAAATCCGGAGACGTTGATGCTGCTAGAGTTGTGTTTGATAACCTGGAGCATCGGAATGAAGTTTCTTGGACTTCACTAATGACTGGTTATGGAATGCATGGTCGTGGTGAAGAAGCTCTACAAATTTTTGATGAGATGCAGAGACTGGGCCTGGTGCCTGATGCTGTAACATATCTTGTTGTTCTCTATGCTTGCAGCCATTCTGGAATGATTGACGAGGGAATGAGATACTTCAATGGCATGAGCAAGAACTCTGGGGTTGTACCTGGGCCAGAGCATTATGCTTGCATGGCTGACCTCTTAGGTCGTGCTGGTCGCTTGGATGATGCTATGAACCTGATCAAAAGCATGCCTATGGAACCGACCACAATTGTATGGGTGGCCTTGCTCAGTGCTTGCAGGATCCATGGCAATATTGAGCTTGGGGAATATGCTGCAGATCGGTTAGCAGCGTTAGACTCAGAAAATGATGGTTCGTATACATTACTCTCAAACATATACGCCAATGCCAAGCGTTGGAAAGATGTTTCCAGGATTAGATTGTTAATGAAACATGCGGGAATCCAGAAGAGGCCGGGTTGCAGTTGGGTGCAAGGAAAGAAAGGCACAACAACCTTCTTTGTGGGTGATAGGACTCATCCACAGTCTGAAAAAATATATCAGATCCTTGTAGATTTGATACAGCGCATCAAAGGCATGGGGTATGTCCCTGAGACAAGCTTTGCACTTCATGATGTTGATGATGAGGAGAAAGGAGATCTTCTTTCTGAACACAGTGAGAAGTTAGCTCTCGCATATGCAATCTTAACTACCCCACCAGGCACCCCTATCCGGATCACCAAGAACTTGCGTGTTTGTGGTGATTGCCACACTGCGATGAAGTACATATCCATGATTATTGAGCATGAAATCATATTGAGAGATTCAAGTCGCTTCCATCATTTCAAGAAAGGATCCTGCTCATGCCGAGGCTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

851

Amino Acids

94.1

Weight (kDa)

6.96

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	89 - 134	1.6e-07	PPR repeat family
PPR_2	PF13041	293 - 334	8.5e-10	PPR repeat family
PPR	PF01535	296 - 325	2e-07	PPR repeat
PPR_2	PF13041	329 - 376	1.6e-10	PPR repeat family
PPR_2	PF13041	439 - 488	7.5e-08	PPR repeat family
PPR	PF01535	441 - 469	5.8e-08	PPR repeat
PPR_2	PF13041	543 - 590	1.9e-12	PPR repeat family
PPR	PF01535	545 - 575	6.3e-09	PPR repeat
E_motif	PF20431	660 - 722	7.2e-29	E motif
Eplus_motif	PF20430	727 - 754	9.6e-11	E+ motif
DYW_deaminase	PF14432	758 - 850	2.3e-46	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16860
fragaria_vesca	FvH4_5g33150
malus_domestica	MD06G1234400.v1.1
prunus_persica	Prupe.7G002900_v2.0.a1
pyrus_communis	pycom06g20910
rosa_chinensis	RchiOBHm_Chr7g0231411
rosa_laevigata	RLG00000001419
rosa_multiflora	Rmu_sc0003396.1_g000030 Rmu_sc0010066.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229340
rosa_rugosa	Rorug07G0266400
rosa_samantha	Rh7BG395100 Rh7CG440800
rosa_wichuraiana	Rw7G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	612, 1023
AccB1I	GGYRCC	2 cut(s)	1726, 2393
AccB7I	CCANNNNNTGG	1 cut(s)	2088
AccBSI	CCGCTC	1 cut(s)	774
AccI	GTMKAC	2 cut(s)	1250, 2051
AccII	CGCG	2 cut(s)	253, 719
AccIII	TCCGGA	2 cut(s)	1577, 2403
AclWI	GGATC	7 cut(s)	375, 1969, 1982, 2230, 2414, 2520, 2533
AcoI	YGGCCR	1 cut(s)	1545
AcsI	RAATTY	4 cut(s)	589, 802, 1494, 1695
AcvI	CACGTG	1 cut(s)	322
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	3 cut(s)	705, 1836, 2456
AfeI	AGCGCT	1 cut(s)	1140
AfiI	CCNNNNNNNGG	3 cut(s)	270, 2088, 2403
AflIII	ACRYGT	2 cut(s)	319, 1245
AjnI	CCWGG	6 cut(s)	1207, 1614, 1722, 1837, 2102, 2389
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AleI	CACNNNNGTG	1 cut(s)	1103
AluBI	AGCT	7 cut(s)	127, 409, 693, 1688, 1993, 2292, 2360
AluI	AGCT	7 cut(s)	127, 409, 693, 1688, 1993, 2292, 2360
Alw21I	GWGCWC	2 cut(s)	327, 1465
Alw26I	GTCTC	6 cut(s)	166, 343, 1113, 1575, 1708, 2279
AlwI	GGATC	7 cut(s)	375, 1969, 1982, 2230, 2414, 2520, 2533
AlwNI	CAGNNNCTG	1 cut(s)	1717
Aor13HI	TCCGGA	2 cut(s)	1577, 2403
Aor51HI	AGCGCT	1 cut(s)	1140
AoxI	GGCC	5 cut(s)	1545, 1720, 1841, 1953, 2144
ApeKI	GCWGC	4 cut(s)	1592, 1767, 2006, 2021
ApoI	RAATTY	4 cut(s)	589, 802, 1494, 1695
AseI	ATTAAT	1 cut(s)	1230
AspLEI	GCGC	8 cut(s)	255, 296, 613, 719, 1024, 1141, 1475, 2259
AspS9I	GGNCC	2 cut(s)	1720, 1841
AsuC2I	CCSGG	3 cut(s)	307, 680, 2148
AsuHPI	GGTGA	9 cut(s)	43, 1090, 1293, 1333, 1373, 1691, 2210, 2401, 2444
BaeGI	GKGCMC	1 cut(s)	1450
BalI	TGGCCA	1 cut(s)	1547
BamHI	GGATCC	2 cut(s)	1974, 2525
BanI	GGYRCC	2 cut(s)	1726, 2393
BanII	GRGCYC	1 cut(s)	416
BarI	GAAGNNNNNNTAC	2 cut(s)	1674, 1706
BbrPI	CACGTG	1 cut(s)	322
BbsI	GAAGAC	1 cut(s)	5
Bbv12I	GWGCWC	2 cut(s)	327, 1465
BbvI	GCAGC	4 cut(s)	1579, 1779, 1993, 2033
BccI	CCATC	7 cut(s)	487, 649, 832, 1063, 1216, 2036, 2517
BceAI	ACGGC	2 cut(s)	248, 281
BciT130I	CCWGG	6 cut(s)	1209, 1616, 1724, 1839, 2104, 2391
BclI	TGATCA	1 cut(s)	1911
BcnI	CCSGG	3 cut(s)	307, 680, 2148
BcoDI	GTCTC	6 cut(s)	166, 343, 1113, 1575, 1708, 2279
BfaI	CTAG	3 cut(s)	339, 1278, 1596
BfmI	CTRYAG	2 cut(s)	1131, 2007
BfoI	RGCGCY	2 cut(s)	297, 1142
BglII	AGATCT	1 cut(s)	2329
Bme1390I	CCNGG	9 cut(s)	307, 680, 1209, 1616, 1724, 1839, 2104, 2148, 2391
BmgT120I	GGNCC	2 cut(s)	1720, 1841
BmiI	GGNNCC	5 cut(s)	1728, 1932, 1976, 2395, 2527
BmrFI	CCNGG	9 cut(s)	307, 680, 1209, 1616, 1724, 1839, 2104, 2148, 2391
BmrI	ACTGGG	1 cut(s)	1727
BmuI	ACTGGG	1 cut(s)	1727
BpiI	GAAGAC	1 cut(s)	5
BplI	GAGNNNNNCTC	2 cut(s)	398, 430
BpmI	CTGGAG	2 cut(s)	1208, 1637
BpuEI	CTTGAG	1 cut(s)	578
BpuMI	CCSGG	3 cut(s)	307, 680, 2148
BsaAI	YACGTR	1 cut(s)	322
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	4 cut(s)	1207, 1838, 1978, 2539
BsaWI	WCCGGW	2 cut(s)	1577, 2403
BsaXI	ACNNNNNCTCC	2 cut(s)	776, 806
Bsc4I	CCNNNNNNNGG	3 cut(s)	270, 2088, 2403
Bse1I	ACTGG	3 cut(s)	275, 1660, 1722
Bse3DI	GCAATG	2 cut(s)	493, 507
BseAI	TCCGGA	2 cut(s)	1577, 2403
BseBI	CCWGG	6 cut(s)	1209, 1616, 1724, 1839, 2104, 2391
BseDI	CCNNGG	4 cut(s)	1207, 1838, 1978, 2539
BseLI	CCNNNNNNNGG	3 cut(s)	270, 2088, 2403
BseMI	GCAATG	2 cut(s)	493, 507
BseMII	CTCAG	6 cut(s)	932, 1074, 1469, 1975, 2046, 2274
BseNI	ACTGG	3 cut(s)	275, 1660, 1722
BseRI	GAGGAG	4 cut(s)	119, 221, 983, 2333
BseSI	GKGCMC	1 cut(s)	1450
BseXI	GCAGC	4 cut(s)	1579, 1779, 1993, 2033
BseYI	CCCAGC	2 cut(s)	409, 1353
Bsh1236I	CGCG	2 cut(s)	253, 719
BshFI	GGCC	5 cut(s)	1547, 1722, 1843, 1955, 2146
BshNI	GGYRCC	2 cut(s)	1726, 2393
BsiHKAI	GWGCWC	2 cut(s)	327, 1465
BsiSI	CCGG	7 cut(s)	306, 365, 421, 680, 1578, 2147, 2404
BslFI	GGGAC	3 cut(s)	211, 1044, 2264
BslI	CCNNNNNNNGG	3 cut(s)	270, 2088, 2403
BsmAI	GTCTC	6 cut(s)	166, 343, 1113, 1575, 1708, 2279
BsmBI	CGTCTC	2 cut(s)	166, 1575
BsmFI	GGGAC	3 cut(s)	211, 1044, 2264
BsmI	GAATGC	5 cut(s)	348, 637, 901, 943, 1671
BsnI	GGCC	5 cut(s)	1547, 1722, 1843, 1955, 2146
Bsp1286I	GDGCHC	4 cut(s)	327, 416, 1450, 1465
Bsp13I	TCCGGA	2 cut(s)	1577, 2403
Bsp143I	GATC	9 cut(s)	367, 1338, 1911, 1974, 2011, 2235, 2329, 2406, 2525
Bsp19I	CCATGG	1 cut(s)	1978
BspANI	GGCC	5 cut(s)	1547, 1722, 1843, 1955, 2146
BspCNI	CTCAG	6 cut(s)	931, 1075, 1470, 1974, 2045, 2275
BspEI	TCCGGA	2 cut(s)	1577, 2403
BspFNI	CGCG	2 cut(s)	253, 719
BspHI	TCATGA	1 cut(s)	2302
BspLI	GGNNCC	5 cut(s)	1728, 1932, 1976, 2395, 2527
BspMAI	CTGCAG	2 cut(s)	1135, 2011
BspPI	GGATC	7 cut(s)	375, 1969, 1982, 2230, 2414, 2520, 2533
BspT107I	GGYRCC	2 cut(s)	1726, 2393
BsrBI	CCGCTC	1 cut(s)	774
BsrDI	GCAATG	2 cut(s)	493, 507
BsrI	ACTGG	3 cut(s)	275, 1660, 1722
BssECI	CCNNGG	4 cut(s)	1207, 1838, 1978, 2539
BssMI	GATC	9 cut(s)	367, 1338, 1911, 1974, 2011, 2235, 2329, 2406, 2525
BssNAI	GTATAC	2 cut(s)	1251, 2052
BssNI	GRCGYC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	1978
Bst1107I	GTATAC	2 cut(s)	1251, 2052
Bst2UI	CCWGG	6 cut(s)	1209, 1616, 1724, 1839, 2104, 2391
Bst4CI	ACNGT	6 cut(s)	11, 1166, 1333, 1361, 2217, 2348
Bst6I	CTCTTC	2 cut(s)	1116, 2135
BstACI	GRCGYC	1 cut(s)	159
BstAPI	GCANNNNNTGC	1 cut(s)	1019
BstBAI	YACGTR	1 cut(s)	322
BstC8I	GCNNGC	7 cut(s)	400, 407, 416, 1765, 1858, 1922, 1969
BstDEI	CTNAG	8 cut(s)	918, 1083, 1400, 1478, 1873, 1961, 2032, 2283
BstDSI	CCRYGG	1 cut(s)	1978
BstFNI	CGCG	2 cut(s)	253, 719
BstH2I	RGCGCY	2 cut(s)	297, 1142
BstHHI	GCGC	8 cut(s)	255, 296, 613, 719, 1024, 1141, 1475, 2259
BstKTI	GATC	9 cut(s)	370, 1341, 1914, 1977, 2014, 2238, 2332, 2409, 2528
BstMAI	GTCTC	6 cut(s)	166, 343, 1113, 1575, 1708, 2279
BstMBI	GATC	9 cut(s)	367, 1338, 1911, 1974, 2011, 2235, 2329, 2406, 2525
BstNI	CCWGG	6 cut(s)	1209, 1616, 1724, 1839, 2104, 2391
BstNSI	RCATGY	3 cut(s)	1249, 1924, 2129
BstSCI	CCNGG	9 cut(s)	305, 678, 1207, 1614, 1722, 1837, 2102, 2146, 2389
BstSFI	CTRYAG	2 cut(s)	1131, 2007
BstSLI	GKGCMC	1 cut(s)	1450
BstUI	CGCG	2 cut(s)	253, 719
BstV1I	GCAGC	4 cut(s)	1579, 1779, 1993, 2033
BstV2I	GAAGAC	1 cut(s)	5
BstX2I	RGATCY	4 cut(s)	1974, 2235, 2329, 2525
BstYI	RGATCY	4 cut(s)	1974, 2235, 2329, 2525
BstZ17I	GTATAC	2 cut(s)	1251, 2052
BsuRI	GGCC	5 cut(s)	1547, 1722, 1843, 1955, 2146
BtgI	CCRYGG	1 cut(s)	1978
BtgZI	GCGATG	3 cut(s)	169, 506, 2462
BtsI	GCAGTG	2 cut(s)	1053, 2442
BtsIMutI	CAGTG	6 cut(s)	1053, 1338, 1475, 1969, 2353, 2442
Cac8I	GCNNGC	7 cut(s)	400, 407, 416, 1765, 1858, 1922, 1969
CaiI	CAGNNNCTG	1 cut(s)	1717
CciI	TCATGA	1 cut(s)	2302
CfoI	GCGC	8 cut(s)	255, 296, 613, 719, 1024, 1141, 1475, 2259
Cfr13I	GGNCC	2 cut(s)	1720, 1841
CseI	GACGC	2 cut(s)	148, 708
Csp6I	GTAC	3 cut(s)	704, 1835, 2455
CspCI	CAANNNNNGTGG	2 cut(s)	1299, 1334
CviQI	GTAC	3 cut(s)	704, 1835, 2455
DdeI	CTNAG	8 cut(s)	918, 1083, 1400, 1478, 1873, 1961, 2032, 2283
DpnI	GATC	9 cut(s)	369, 1340, 1913, 1976, 2013, 2237, 2331, 2408, 2527
DpnII	GATC	9 cut(s)	367, 1338, 1911, 1974, 2011, 2235, 2329, 2406, 2525
EaeI	YGGCCR	1 cut(s)	1545
Eam1104I	CTCTTC	2 cut(s)	1116, 2135
EarI	CTCTTC	2 cut(s)	1116, 2135
Eco130I	CCWWGG	1 cut(s)	1978
Eco24I	GRGCYC	1 cut(s)	416
Eco47III	AGCGCT	1 cut(s)	1140
Eco72I	CACGTG	1 cut(s)	322
EcoRI	GAATTC	2 cut(s)	589, 802
EcoRII	CCWGG	6 cut(s)	1207, 1614, 1722, 1837, 2102, 2389
EcoT14I	CCWWGG	1 cut(s)	1978
EcoT22I	ATGCAT	1 cut(s)	1671
EcoT38I	GRGCYC	1 cut(s)	416
ErhI	CCWWGG	1 cut(s)	1978
Esp3I	CGTCTC	2 cut(s)	166, 1575
FalI	AAGNNNNNCTT	2 cut(s)	2316, 2348
FaqI	GGGAC	3 cut(s)	211, 1044, 2264
FauI	CCCGC	3 cut(s)	265, 767, 2122
FauNDI	CATATG	1 cut(s)	2368
FbaI	TGATCA	1 cut(s)	1911
FblI	GTMKAC	2 cut(s)	1250, 2051
FriOI	GRGCYC	1 cut(s)	416
FspBI	CTAG	3 cut(s)	339, 1278, 1596
FspI	TGCGCA	2 cut(s)	612, 1023
GlaI	GCGC	8 cut(s)	254, 295, 612, 718, 1023, 1140, 1474, 2258
GsaI	CCCAGC	2 cut(s)	413, 1357
GsuI	CTGGAG	2 cut(s)	1208, 1637
HaeII	RGCGCY	2 cut(s)	297, 1142
HaeIII	GGCC	5 cut(s)	1547, 1722, 1843, 1955, 2146
HapII	CCGG	7 cut(s)	306, 365, 421, 680, 1578, 2147, 2404
HgaI	GACGC	2 cut(s)	148, 708
HhaI	GCGC	8 cut(s)	255, 296, 613, 719, 1024, 1141, 1475, 2259
Hin1I	GRCGYC	1 cut(s)	159
Hin6I	GCGC	8 cut(s)	253, 294, 611, 717, 1022, 1139, 1473, 2257
HinP1I	GCGC	8 cut(s)	253, 294, 611, 717, 1022, 1139, 1473, 2257
HindIII	AAGCTT	1 cut(s)	2290
HinfI	GANTC	9 cut(s)	467, 623, 751, 1292, 1526, 2030, 2133, 2206, 2495
HpaII	CCGG	7 cut(s)	306, 365, 421, 680, 1578, 2147, 2404
HphI	GGTGA	9 cut(s)	43, 1090, 1293, 1333, 1373, 1691, 2210, 2401, 2444
Hpy166II	GTNNAC	4 cut(s)	268, 676, 1251, 2052
Hpy188I	TCNGA	8 cut(s)	174, 921, 1084, 1626, 2035, 2221, 2235, 2341
Hpy188III	TCNNGA	9 cut(s)	314, 339, 1061, 1578, 1776, 2137, 2303, 2404, 2518
Hpy8I	GTNNAC	4 cut(s)	268, 676, 1251, 2052
Hpy99I	CGWCG	1 cut(s)	724
HpyAV	CCTTC	5 cut(s)	70, 211, 532, 1190, 2197
HpyCH4III	ACNGT	6 cut(s)	11, 1166, 1333, 1361, 2217, 2348
HpyCH4IV	ACGT	3 cut(s)	279, 321, 1584
HpyF3I	CTNAG	8 cut(s)	918, 1083, 1400, 1478, 1873, 1961, 2032, 2283
HpySE526I	ACGT	3 cut(s)	279, 321, 1584
Hsp92I	GRCGYC	1 cut(s)	159
HspAI	GCGC	8 cut(s)	253, 294, 611, 717, 1022, 1139, 1473, 2257
Kpn2I	TCCGGA	2 cut(s)	1577, 2403
Ksp22I	TGATCA	1 cut(s)	1911
Kzo9I	GATC	9 cut(s)	367, 1338, 1911, 1974, 2011, 2235, 2329, 2406, 2525
LmnI	GCTCC	5 cut(s)	132, 214, 423, 1136, 1618
Lsp1109I	GCAGC	4 cut(s)	1579, 1779, 1993, 2033
MaeI	CTAG	3 cut(s)	339, 1278, 1596
MaeII	ACGT	3 cut(s)	279, 321, 1584
MaeIII	GTNAC	5 cut(s)	904, 991, 1096, 1321, 1738
MalI	GATC	9 cut(s)	369, 1340, 1913, 1976, 2013, 2237, 2331, 2408, 2527
MbiI	CCGCTC	1 cut(s)	774
MboI	GATC	9 cut(s)	367, 1338, 1911, 1974, 2011, 2235, 2329, 2406, 2525
MboII	GAAGA	8 cut(s)	5, 55, 83, 985, 1103, 1694, 2152, 2324
MfeI	CAATTG	2 cut(s)	1549, 1941
MflI	RGATCY	4 cut(s)	1974, 2235, 2329, 2525
MhlI	GDGCHC	4 cut(s)	327, 416, 1450, 1465
MlsI	TGGCCA	1 cut(s)	1547
MluCI	AATT	8 cut(s)	589, 802, 1173, 1227, 1494, 1549, 1695, 1941
MluNI	TGGCCA	1 cut(s)	1547
MlyI	GAGTC	3 cut(s)	476, 2024, 2200
MmeI	TCCRAC	2 cut(s)	1173, 2069
Mox20I	TGGCCA	1 cut(s)	1547
Mph1103I	ATGCAT	1 cut(s)	1671
MroI	TCCGGA	2 cut(s)	1577, 2403
MscI	TGGCCA	1 cut(s)	1547
MseI	TTAA	9 cut(s)	30, 699, 768, 876, 1176, 1230, 1418, 2117, 2378
MslI	CAYNNNNRTG	8 cut(s)	759, 1103, 1167, 1626, 1674, 1925, 2447, 2462
Msp20I	TGGCCA	1 cut(s)	1547
MspI	CCGG	7 cut(s)	306, 365, 421, 680, 1578, 2147, 2404
MspR9I	CCNGG	9 cut(s)	307, 680, 1209, 1616, 1724, 1839, 2104, 2148, 2391
MunI	CAATTG	2 cut(s)	1549, 1941
Mva1269I	GAATGC	5 cut(s)	348, 637, 901, 943, 1671
MvaI	CCWGG	6 cut(s)	1209, 1616, 1724, 1839, 2104, 2391
MvnI	CGCG	2 cut(s)	253, 719
NciI	CCSGG	3 cut(s)	307, 680, 2148
NcoI	CCATGG	1 cut(s)	1978
NdeI	CATATG	1 cut(s)	2368
NdeII	GATC	9 cut(s)	367, 1338, 1911, 1974, 2011, 2235, 2329, 2406, 2525
NlaIV	GGNNCC	5 cut(s)	1728, 1932, 1976, 2395, 2527
NmuCI	GTSAC	3 cut(s)	991, 1096, 1321
NsbI	TGCGCA	2 cut(s)	612, 1023
NsiI	ATGCAT	1 cut(s)	1671
NspI	RCATGY	3 cut(s)	1249, 1924, 2129
OliI	CACNNNNGTG	1 cut(s)	1103
PaeI	GCATGC	1 cut(s)	1924
PagI	TCATGA	1 cut(s)	2302
PciI	ACATGT	1 cut(s)	1245
PcsI	WCGNNNNNNNCGW	1 cut(s)	590
PctI	GAATGC	5 cut(s)	348, 637, 901, 943, 1671
PfeI	GAWTC	6 cut(s)	623, 751, 1292, 1526, 2133, 2495
PflMI	CCANNNNNTGG	1 cut(s)	2088
PfoI	TCCNGGA	1 cut(s)	2102
PleI	GAGTC	3 cut(s)	475, 2024, 2200
PmaCI	CACGTG	1 cut(s)	322
PmlI	CACGTG	1 cut(s)	322
PpsI	GAGTC	3 cut(s)	475, 2024, 2200
Ppu21I	YACGTR	1 cut(s)	322
PscI	ACATGT	1 cut(s)	1245
PshBI	ATTAAT	1 cut(s)	1230
Psp6I	CCWGG	6 cut(s)	1207, 1614, 1722, 1837, 2102, 2389
PspCI	CACGTG	1 cut(s)	322
PspFI	CCCAGC	2 cut(s)	409, 1353
PspGI	CCWGG	6 cut(s)	1207, 1614, 1722, 1837, 2102, 2389
PspN4I	GGNNCC	5 cut(s)	1728, 1932, 1976, 2395, 2527
PspPI	GGNCC	2 cut(s)	1720, 1841
PstI	CTGCAG	2 cut(s)	1135, 2011
PstNI	CAGNNNCTG	1 cut(s)	1717
PsuI	RGATCY	4 cut(s)	1974, 2235, 2329, 2525
RsaI	GTAC	3 cut(s)	705, 1836, 2456
RsaNI	GTAC	3 cut(s)	704, 1835, 2455
RseI	CAYNNNNRTG	8 cut(s)	759, 1103, 1167, 1626, 1674, 1925, 2447, 2462
SaqAI	TTAA	9 cut(s)	30, 699, 768, 876, 1176, 1230, 1418, 2117, 2378
Sau3AI	GATC	9 cut(s)	367, 1338, 1911, 1974, 2011, 2235, 2329, 2406, 2525
Sau96I	GGNCC	2 cut(s)	1720, 1841
SchI	GAGTC	3 cut(s)	476, 2024, 2200
ScrFI	CCNGG	9 cut(s)	307, 680, 1209, 1616, 1724, 1839, 2104, 2148, 2391
SduI	GDGCHC	4 cut(s)	327, 416, 1450, 1465
SfcI	CTRYAG	2 cut(s)	1131, 2007
SmiMI	CAYNNNNRTG	8 cut(s)	759, 1103, 1167, 1626, 1674, 1925, 2447, 2462
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
SphI	GCATGC	1 cut(s)	1924
Sse9I	AATT	8 cut(s)	589, 802, 1173, 1227, 1494, 1549, 1695, 1941
SspI	AATATT	1 cut(s)	1987
SspMI	CTAG	3 cut(s)	339, 1278, 1596
StyD4I	CCNGG	9 cut(s)	305, 678, 1207, 1614, 1722, 1837, 2102, 2146, 2389
StyI	CCWWGG	1 cut(s)	1978
TaaI	ACNGT	6 cut(s)	11, 1166, 1333, 1361, 2217, 2348
TaiI	ACGT	3 cut(s)	282, 324, 1587
TaqI	TCGA	3 cut(s)	234, 470, 593
TasI	AATT	8 cut(s)	589, 802, 1173, 1227, 1494, 1549, 1695, 1941
TatI	WGTACW	2 cut(s)	703, 2454
TauI	GCSGC	7 cut(s)	156, 159, 191, 253, 263, 405, 437
TfiI	GAWTC	6 cut(s)	623, 751, 1292, 1526, 2133, 2495
Tru1I	TTAA	9 cut(s)	30, 699, 768, 876, 1176, 1230, 1418, 2117, 2378
Tru9I	TTAA	9 cut(s)	30, 699, 768, 876, 1176, 1230, 1418, 2117, 2378
TscAI	CASTG	6 cut(s)	1053, 1338, 1482, 1969, 2353, 2449
TseFI	GTSAC	3 cut(s)	991, 1096, 1321
TseI	GCWGC	4 cut(s)	1592, 1767, 2006, 2021
Tsp45I	GTSAC	3 cut(s)	991, 1096, 1321
TspGWI	ACGGA	2 cut(s)	278, 550
TspRI	CASTG	6 cut(s)	1053, 1338, 1482, 1969, 2353, 2449
Van91I	CCANNNNNTGG	1 cut(s)	2088
VspI	ATTAAT	1 cut(s)	1230
XapI	RAATTY	4 cut(s)	589, 802, 1494, 1695
XbaI	TCTAGA	1 cut(s)	338
XceI	RCATGY	3 cut(s)	1249, 1924, 2129
XmiI	GTMKAC	2 cut(s)	1250, 2051
XspI	CTAG	3 cut(s)	339, 1278, 1596
Zsp2I	ATGCAT	1 cut(s)	1671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.