Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0016620

Physical Location & Seq

Genomic Coordinates Reverse (-)

13812913 .. 13816065

Gene Structure 3153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00229340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2349 bp

ATGCTCCTTCACAAGCCTTGTCTGTCCTCGAACGCCTCGCCCCGCCGTGCCCCGCCACCGTTTACTGGTGGAACGTGCTTATCCGGAGCGCCGTGCGCTCTGGGTTTCTCGAAGACGTGCTCTGTCTCTACCGTAGAATGCGGAGACTTGGATGGAAGCCTGACCATTATTCTTACCCTTTTGTCTTCAAAGCCTGCGGCGAGCTTGGCTCGTTCCGGCGAGGCGCCTCGGTCCATGGGGCTGTGTGTGCGAGTGGGTTTGAGTCGAATGTGTTTGTTTGCAATGCGGTGGTGGCAATGTACGGCAGGTGTGGGGCTTTGGGGGATGCACGGAAGGTGTTCGACGAAATGCTTGAGAGAGGGACTGGGGATGTTGTGTCGTGGAAATTCGATTACGGCGGTTTATGCTCAGAGTGGGGATTCCGAGAATGCCGTTGGAATGTTTGAATTGATGACTGGTGGTTTTCGTGTGCAGCCGGATGCTGTTAGCTTGGTTAATGTTCTTCCTTCTTGCGCTTCGCTTGGGGAACCGAAGTGGGGGATGCAGATTCACGGTTATGCTGTTAAGAGTGGGTTGGCTGAGGATGTGTTTGTGGGGAATGCGGTTATTGATATGTATGCCAAGTGTGGGGTGATGGACGAGGCAAACAATGTGTTTGATGGGATGAAGGTTAAGGATGTGGTTTCGTGGAATGCTGTGGTAACTGGGTATTCTCAGGTTGGTAGATTTGAGAATGTTATTGGTTTATTTGAAAAGATGAGGGAGGCGAAGATTGAGTTGAATGTTGTCACTTGGAGTGCTGTGATTGCAGGGTATGCGCAGAGGGGACATGGTTACCAAGCACTGGATGTGTTTCGACAAATGATGGCTTGTGGCTCTGAGCCAAATGTTGTGACACTTGTGTCTCTTCTTTCGGGTTGTGCCTCTGCAGGAGCACTAAATCGTGGCAGAGAAACTCACAGTTATGCAATTAAATGGATGCTGAACTTGGAAGGAAATGACCCTGGAAATGATGTTATGGTAATTAATGGTTTGATTGACATGTATACTAAATGCAAGAGTGCCAAAGTTGCTCGAACGATTTTTGATTCTCTATCACCGGACACAAAAAATGTGGTGACTTGGACGGTGATGATTGGCGGGTATGCCCAGCATGGTGAAGCAAATGAGGCACTTGAACTTTTCTACCAGATGCTAAGGCAGAATTTTCCCTTAAAGCCAAATGGTTTTACTATATCTTGTGCCCTGATTGCCTGTGCTCGTCTGGGTGCACTGAGGTCTGGTAAGCAAATTCATGCTTATGTACTACGCAATCAGTATGATTCTATGAAGCTGTTTGTGGCCAATTGCCTTATTGATATGTATTCCAAATCTGGAGACGTTGATGCTGCTAGAGTTGTGTTTGATAACCTGGAGCATCGGAATGAAGTTTCTTGGACTTCACTAATGACTGGTTATGGAATGCATGGTCGTGGTGAAGAAGCTCTACAGATTTTTGATGAGATGCAGAGACTGGGCCTGGTGCCTGATGCTGTAACATTTCTTGTTGTTCTCTATGCTTGCAGCCATTCTGGAATGATTGATGAGGGAATGAGATACTTCAATGGCATGAGCAAGAACTCTGGGGTTGTTCCTGGGCCAGAGCACTATGCTTGCATGGCTGACCTCTTGGGGCGTGCTGGTCGCTTGGATGACGCTATGAACCTGATCAAAAGCATGCCTATGAAACCGACCCCAATTGTATGGGTGGCCTTGCTCAGTGCTTGCAGGATCCATGGCAATGTTGAGCTTGGGGAATATGCTGCAGATCGGTTAACAGAGTTGGACTCAGAGAATGATGGTTCGTATACATTGCTTTCAAACATATATGCCAATGCCAAGCGTTGGAAAGATGTTTCCAGGATTAGATTGTTAATGAAACATACGGGCATCAAGAAGAGGCCGGGTTGCAGTTGGGTGCAAGGAAAGAAAGGCACAACAACCTTCTTTGTGGGTGATAGGACTCATCCAGAGTCTGAAAAAATATATGAGATCCTTGCAGATTTGATAAAGCGCATCAAAGGCATGGGGTATGTTCCTGAGACAAGCTTTGCACTTCATGATGTTGATGATGAGGAGAAAGGGGATCTTCTCTTTGAACACAGTGAGAAGTTAGCTCTGGCCTATGCAATCCTAACCACCCCACCAGGTGCGCCAATCCGGATTACCAAGAACTTGCGTGTTTGTGGTGATTGCCACACTGCAATGAAGTACATATCCATGATTATTGAGCATGAAATCATATTAAGAGATTCAAGTCGCTTCCATCATTTCAAGAAAGGATCCTGCTCATGCCGAGGCTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

782

Amino Acids

85.69

Weight (kDa)

8.03

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	225 - 266	1.8e-08	PPR repeat family
PPR	PF01535	228 - 257	8.8e-06	PPR repeat
PPR_3	PF13812	249 - 307	4.3e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	261 - 308	3.3e-10	PPR repeat family
PPR_2	PF13041	370 - 421	3e-09	PPR repeat family
PPR	PF01535	373 - 402	3.5e-08	PPR repeat
PPR_2	PF13041	475 - 522	7.9e-12	PPR repeat family
PPR	PF01535	477 - 507	5.7e-09	PPR repeat
E_motif	PF20431	592 - 654	1e-31	E motif
Eplus_motif	PF20430	659 - 686	1.1e-10	E+ motif
DYW_deaminase	PF14432	690 - 782	8.6e-47	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16860
fragaria_vesca	FvH4_5g33150
malus_domestica	MD06G1234400.v1.1
prunus_persica	Prupe.7G002900_v2.0.a1
pyrus_communis	pycom06g20910
rosa_chinensis	RchiOBHm_Chr7g0231411
rosa_laevigata	RLG00000001419
rosa_multiflora	Rmu_sc0003396.1_g000030 Rmu_sc0010066.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229340
rosa_rugosa	Rorug07G0266400
rosa_samantha	Rh7BG395100 Rh7CG440800
rosa_wichuraiana	Rw7G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	296
AasI	GACNNNNNNGTC	1 cut(s)	901
Acc16I	TGCGCA	1 cut(s)	819
Acc36I	ACCTGC	1 cut(s)	296
AccB1I	GGYRCC	2 cut(s)	223, 1522
AccB7I	CCANNNNNTGG	2 cut(s)	844, 1884
AccI	GTMKAC	2 cut(s)	1046, 1847
AccIII	TCCGGA	2 cut(s)	83, 2199
AciI	CCGC	8 cut(s)	43, 53, 141, 197, 286, 398, 602, 1140
AclWI	GGATC	6 cut(s)	1765, 1778, 2026, 2133, 2316, 2329
AcoI	YGGCCR	1 cut(s)	1341
AcsI	RAATTY	3 cut(s)	385, 1204, 1290
AcyI	GRCGYC	1 cut(s)	224
AdeI	CACNNNGTG	1 cut(s)	2189
AfaI	GTAC	3 cut(s)	301, 1305, 2252
AfiI	CCNNNNNNNGG	5 cut(s)	65, 536, 627, 844, 1884
AflIII	ACRYGT	1 cut(s)	1041
AjiI	CACGTC	1 cut(s)	117
AjnI	CCWGG	6 cut(s)	1003, 1410, 1518, 1633, 1898, 2185
AluBI	AGCT	7 cut(s)	204, 489, 1333, 1484, 1789, 2088, 2156
AluI	AGCT	7 cut(s)	204, 489, 1333, 1484, 1789, 2088, 2156
Alw21I	GWGCWC	5 cut(s)	122, 937, 1261, 1273, 1647
Alw26I	GTCTC	6 cut(s)	130, 138, 909, 1371, 1504, 2075
Alw44I	GTGCAC	1 cut(s)	1269
AlwI	GGATC	6 cut(s)	1765, 1778, 2026, 2133, 2316, 2329
AlwNI	CAGNNNCTG	2 cut(s)	1513, 2015
Aor13HI	TCCGGA	2 cut(s)	83, 2199
AoxI	GGCC	6 cut(s)	1341, 1516, 1637, 1749, 1940, 2160
ApaLI	GTGCAC	1 cut(s)	1269
ApeKI	GCWGC	4 cut(s)	472, 1388, 1563, 1802
ApoI	RAATTY	3 cut(s)	385, 1204, 1290
AseI	ATTAAT	1 cut(s)	1026
Asp700I	GAANNNNTTC	1 cut(s)	337
AspLEI	GCGC	7 cut(s)	91, 98, 226, 515, 820, 2055, 2194
AspS9I	GGNCC	3 cut(s)	231, 1516, 1637
AsuC2I	CCSGG	1 cut(s)	1944
AsuHPI	GGTGA	8 cut(s)	643, 1089, 1129, 1141, 1169, 1487, 2006, 2240
AvaII	GGWCC	1 cut(s)	231
BaeGI	GKGCMC	3 cut(s)	52, 1246, 1273
BalI	TGGCCA	1 cut(s)	1343
BamHI	GGATCC	2 cut(s)	1770, 2321
BanI	GGYRCC	2 cut(s)	223, 1522
BarI	GAAGNNNNNNTAC	2 cut(s)	1470, 1502
BbsI	GAAGAC	2 cut(s)	119, 177
Bbv12I	GWGCWC	5 cut(s)	122, 937, 1261, 1273, 1647
BbvCI	CCTCAGC	1 cut(s)	579
BbvI	GCAGC	4 cut(s)	484, 1375, 1575, 1789
BccI	CCATC	6 cut(s)	146, 628, 653, 859, 1832, 2313
BceAI	ACGGC	5 cut(s)	30, 76, 318, 411, 416
BciT130I	CCWGG	6 cut(s)	1005, 1412, 1520, 1635, 1900, 2187
BclI	TGATCA	1 cut(s)	1707
BcnI	CCSGG	1 cut(s)	1944
BcoDI	GTCTC	6 cut(s)	130, 138, 909, 1371, 1504, 2075
BfaI	CTAG	1 cut(s)	1392
BfmI	CTRYAG	3 cut(s)	927, 1487, 1803
BfoI	RGCGCY	2 cut(s)	92, 227
BfuAI	ACCTGC	1 cut(s)	296
BisI	GCNGC	5 cut(s)	198, 473, 1389, 1564, 1803
BlsI	GCNGC	5 cut(s)	199, 474, 1390, 1565, 1804
Bme1390I	CCNGG	7 cut(s)	1005, 1412, 1520, 1635, 1900, 1944, 2187
Bme18I	GGWCC	1 cut(s)	231
BmgBI	CACGTC	1 cut(s)	117
BmgT120I	GGNCC	3 cut(s)	231, 1516, 1637
BmiI	GGNNCC	5 cut(s)	225, 528, 1524, 1772, 2323
BmrFI	CCNGG	7 cut(s)	1005, 1412, 1520, 1635, 1900, 1944, 2187
BmrI	ACTGGG	3 cut(s)	374, 714, 1523
BmuI	ACTGGG	3 cut(s)	374, 714, 1523
BpiI	GAAGAC	2 cut(s)	119, 177
BplI	GAGNNNNNCTC	4 cut(s)	193, 225, 1811, 1843
BpmI	CTGGAG	2 cut(s)	1395, 1433
Bpu10I	CCTNAGC	2 cut(s)	579, 1196
BpuEI	CTTGAG	1 cut(s)	373
BpuMI	CCSGG	1 cut(s)	1944
BsaHI	GRCGYC	1 cut(s)	224
BsaJI	CCNNGG	6 cut(s)	227, 234, 1003, 1634, 1774, 2335
BsaWI	WCCGGW	3 cut(s)	83, 1099, 2199
Bsc4I	CCNNNNNNNGG	5 cut(s)	65, 536, 627, 844, 1884
Bse1I	ACTGG	7 cut(s)	70, 369, 460, 709, 849, 1456, 1518
Bse3DI	GCAATG	5 cut(s)	288, 302, 1786, 1850, 2250
BseAI	TCCGGA	2 cut(s)	83, 2199
BseBI	CCWGG	6 cut(s)	1005, 1412, 1520, 1635, 1900, 2187
BseDI	CCNNGG	6 cut(s)	227, 234, 1003, 1634, 1774, 2335
BseLI	CCNNNNNNNGG	5 cut(s)	65, 536, 627, 844, 1884
BseMI	GCAATG	5 cut(s)	288, 302, 1786, 1850, 2250
BseMII	CTCAG	8 cut(s)	422, 570, 728, 870, 1265, 1771, 1842, 2070
BseNI	ACTGG	7 cut(s)	70, 369, 460, 709, 849, 1456, 1518
BseRI	GAGGAG	1 cut(s)	2129
BseSI	GKGCMC	3 cut(s)	52, 1246, 1273
BseXI	GCAGC	4 cut(s)	484, 1375, 1575, 1789
BseYI	CCCAGC	1 cut(s)	1149
BsgI	GTGCAG	1 cut(s)	491
BshFI	GGCC	6 cut(s)	1343, 1518, 1639, 1751, 1942, 2162
BshNI	GGYRCC	2 cut(s)	223, 1522
BsiHKAI	GWGCWC	5 cut(s)	122, 937, 1261, 1273, 1647
BsiSI	CCGG	6 cut(s)	84, 216, 476, 1100, 1943, 2200
BslFI	GGGAC	2 cut(s)	375, 840
BslI	CCNNNNNNNGG	5 cut(s)	65, 536, 627, 844, 1884
BsmAI	GTCTC	6 cut(s)	130, 138, 909, 1371, 1504, 2075
BsmBI	CGTCTC	1 cut(s)	1371
BsmFI	GGGAC	2 cut(s)	375, 840
BsmI	GAATGC	5 cut(s)	143, 433, 604, 697, 1467
BsnI	GGCC	6 cut(s)	1343, 1518, 1639, 1751, 1942, 2162
Bsp1286I	GDGCHC	7 cut(s)	52, 122, 937, 1246, 1261, 1273, 1647
Bsp13I	TCCGGA	2 cut(s)	83, 2199
Bsp143I	GATC	6 cut(s)	1707, 1770, 1807, 2031, 2125, 2321
Bsp19I	CCATGG	2 cut(s)	234, 1774
BspACI	CCGC	8 cut(s)	43, 53, 141, 197, 286, 398, 602, 1140
BspANI	GGCC	6 cut(s)	1343, 1518, 1639, 1751, 1942, 2162
BspCNI	CTCAG	8 cut(s)	421, 571, 727, 871, 1266, 1770, 1841, 2071
BspEI	TCCGGA	2 cut(s)	83, 2199
BspHI	TCATGA	1 cut(s)	2098
BspLI	GGNNCC	5 cut(s)	225, 528, 1524, 1772, 2323
BspMAI	CTGCAG	2 cut(s)	931, 1807
BspMI	ACCTGC	1 cut(s)	296
BspPI	GGATC	6 cut(s)	1765, 1778, 2026, 2133, 2316, 2329
BspT107I	GGYRCC	2 cut(s)	223, 1522
BsrDI	GCAATG	5 cut(s)	288, 302, 1786, 1850, 2250
BsrI	ACTGG	7 cut(s)	70, 369, 460, 709, 849, 1456, 1518
BssECI	CCNNGG	6 cut(s)	227, 234, 1003, 1634, 1774, 2335
BssMI	GATC	6 cut(s)	1707, 1770, 1807, 2031, 2125, 2321
BssNAI	GTATAC	2 cut(s)	1047, 1848
BssNI	GRCGYC	1 cut(s)	224
BssT1I	CCWWGG	2 cut(s)	234, 1774
Bst1107I	GTATAC	2 cut(s)	1047, 1848
Bst2UI	CCWGG	6 cut(s)	1005, 1412, 1520, 1635, 1900, 2187
Bst4CI	ACNGT	6 cut(s)	60, 133, 554, 962, 1129, 2144
Bst6I	CTCTTC	2 cut(s)	912, 1931
BstACI	GRCGYC	1 cut(s)	224
BstAPI	GCANNNNNTGC	1 cut(s)	815
BstC8I	GCNNGC	7 cut(s)	195, 202, 1561, 1654, 1677, 1718, 1765
BstDEI	CTNAG	9 cut(s)	408, 579, 714, 879, 1196, 1274, 1757, 1828, 2079
BstDSI	CCRYGG	2 cut(s)	234, 1774
BstEII	GGTNACC	1 cut(s)	833
BstH2I	RGCGCY	2 cut(s)	92, 227
BstHHI	GCGC	7 cut(s)	91, 98, 226, 515, 820, 2055, 2194
BstKTI	GATC	6 cut(s)	1710, 1773, 1810, 2034, 2128, 2324
BstMAI	GTCTC	6 cut(s)	130, 138, 909, 1371, 1504, 2075
BstMBI	GATC	6 cut(s)	1707, 1770, 1807, 2031, 2125, 2321
BstNI	CCWGG	6 cut(s)	1005, 1412, 1520, 1635, 1900, 2187
BstNSI	RCATGY	2 cut(s)	1045, 1720
BstPI	GGTNACC	1 cut(s)	833
BstSCI	CCNGG	7 cut(s)	1003, 1410, 1518, 1633, 1898, 1942, 2185
BstSFI	CTRYAG	3 cut(s)	927, 1487, 1803
BstSLI	GKGCMC	3 cut(s)	52, 1246, 1273
BstV1I	GCAGC	4 cut(s)	484, 1375, 1575, 1789
BstV2I	GAAGAC	2 cut(s)	119, 177
BstX2I	RGATCY	4 cut(s)	1770, 2031, 2125, 2321
BstXI	CCANNNNNNTGG	1 cut(s)	1743
BstYI	RGATCY	4 cut(s)	1770, 2031, 2125, 2321
BstZ17I	GTATAC	2 cut(s)	1047, 1848
BsuRI	GGCC	6 cut(s)	1343, 1518, 1639, 1751, 1942, 2162
BtgI	CCRYGG	2 cut(s)	234, 1774
BtrI	CACGTC	1 cut(s)	117
BtsI	GCAGTG	1 cut(s)	2238
BtsIMutI	CAGTG	5 cut(s)	842, 1271, 1765, 2149, 2238
BveI	ACCTGC	1 cut(s)	296
Cac8I	GCNNGC	7 cut(s)	195, 202, 1561, 1654, 1677, 1718, 1765
CaiI	CAGNNNCTG	2 cut(s)	1513, 2015
CciI	TCATGA	1 cut(s)	2098
CfoI	GCGC	7 cut(s)	91, 98, 226, 515, 820, 2055, 2194
Cfr13I	GGNCC	3 cut(s)	231, 1516, 1637
CseI	GACGC	1 cut(s)	1703
CsiI	ACCWGGT	1 cut(s)	2185
Csp6I	GTAC	3 cut(s)	300, 1304, 2251
CspCI	CAANNNNNGTGG	2 cut(s)	1095, 1130
CviQI	GTAC	3 cut(s)	300, 1304, 2251
DdeI	CTNAG	9 cut(s)	408, 579, 714, 879, 1196, 1274, 1757, 1828, 2079
DinI	GGCGCC	1 cut(s)	225
DpnI	GATC	6 cut(s)	1709, 1772, 1809, 2033, 2127, 2323
DpnII	GATC	6 cut(s)	1707, 1770, 1807, 2031, 2125, 2321
DraIII	CACNNNGTG	1 cut(s)	2189
DrdI	GACNNNNNNGTC	1 cut(s)	901
DseDI	GACNNNNNNGTC	1 cut(s)	901
EaeI	YGGCCR	1 cut(s)	1341
Eam1104I	CTCTTC	2 cut(s)	912, 1931
EarI	CTCTTC	2 cut(s)	912, 1931
Eco130I	CCWWGG	2 cut(s)	234, 1774
Eco47I	GGWCC	1 cut(s)	231
Eco91I	GGTNACC	1 cut(s)	833
EcoO65I	GGTNACC	1 cut(s)	833
EcoRII	CCWGG	6 cut(s)	1003, 1410, 1518, 1633, 1898, 2185
EcoT14I	CCWWGG	2 cut(s)	234, 1774
EcoT22I	ATGCAT	1 cut(s)	1467
EgeI	GGCGCC	1 cut(s)	225
EheI	GGCGCC	1 cut(s)	225
ErhI	CCWWGG	2 cut(s)	234, 1774
Esp3I	CGTCTC	1 cut(s)	1371
FalI	AAGNNNNNCTT	2 cut(s)	2112, 2144
FaqI	GGGAC	2 cut(s)	375, 840
FauI	CCCGC	3 cut(s)	50, 60, 1133
FbaI	TGATCA	1 cut(s)	1707
FblI	GTMKAC	2 cut(s)	1046, 1847
Fnu4HI	GCNGC	5 cut(s)	198, 473, 1389, 1564, 1803
Fsp4HI	GCNGC	5 cut(s)	198, 473, 1389, 1564, 1803
FspBI	CTAG	1 cut(s)	1392
FspI	TGCGCA	1 cut(s)	819
GlaI	GCGC	7 cut(s)	90, 97, 225, 514, 819, 2054, 2193
GluI	GCNGC	5 cut(s)	198, 473, 1389, 1564, 1803
GsaI	CCCAGC	1 cut(s)	1153
GsuI	CTGGAG	2 cut(s)	1395, 1433
HaeII	RGCGCY	2 cut(s)	92, 227
HaeIII	GGCC	6 cut(s)	1343, 1518, 1639, 1751, 1942, 2162
HapII	CCGG	6 cut(s)	84, 216, 476, 1100, 1943, 2200
HgaI	GACGC	1 cut(s)	1703
HhaI	GCGC	7 cut(s)	91, 98, 226, 515, 820, 2055, 2194
Hin1I	GRCGYC	1 cut(s)	224
Hin6I	GCGC	7 cut(s)	89, 96, 224, 513, 818, 2053, 2192
HinP1I	GCGC	7 cut(s)	89, 96, 224, 513, 818, 2053, 2192
HincII	GTYRAC	1 cut(s)	1815
HindII	GTYRAC	1 cut(s)	1815
HindIII	AAGCTT	1 cut(s)	2086
HinfI	GANTC	9 cut(s)	262, 419, 547, 1088, 1322, 1826, 2002, 2012, 2291
HpaI	GTTAAC	1 cut(s)	1815
HpaII	CCGG	6 cut(s)	84, 216, 476, 1100, 1943, 2200
HphI	GGTGA	8 cut(s)	643, 1089, 1129, 1141, 1169, 1487, 2006, 2240
Hpy166II	GTNNAC	5 cut(s)	63, 1047, 1271, 1815, 1848
Hpy188I	TCNGA	6 cut(s)	411, 424, 880, 1422, 1831, 2017
Hpy8I	GTNNAC	5 cut(s)	63, 1047, 1271, 1815, 1848
Hpy99I	CGWCG	1 cut(s)	346
HpyAV	CCTTC	6 cut(s)	17, 327, 516, 661, 986, 1993
HpyCH4III	ACNGT	6 cut(s)	60, 133, 554, 962, 1129, 2144
HpyCH4IV	ACGT	3 cut(s)	74, 116, 1380
HpyF3I	CTNAG	9 cut(s)	408, 579, 714, 879, 1196, 1274, 1757, 1828, 2079
HpySE526I	ACGT	3 cut(s)	74, 116, 1380
Hsp92I	GRCGYC	1 cut(s)	224
HspAI	GCGC	7 cut(s)	89, 96, 224, 513, 818, 2053, 2192
KasI	GGCGCC	1 cut(s)	223
Kpn2I	TCCGGA	2 cut(s)	83, 2199
Ksp22I	TGATCA	1 cut(s)	1707
KspAI	GTTAAC	1 cut(s)	1815
Kzo9I	GATC	6 cut(s)	1707, 1770, 1807, 2031, 2125, 2321
LmnI	GCTCC	4 cut(s)	9, 86, 932, 1414
Lsp1109I	GCAGC	4 cut(s)	484, 1375, 1575, 1789
MabI	ACCWGGT	1 cut(s)	2185
MaeI	CTAG	1 cut(s)	1392
MaeII	ACGT	3 cut(s)	74, 116, 1380
MaeIII	GTNAC	6 cut(s)	700, 787, 833, 892, 1117, 1534
MalI	GATC	6 cut(s)	1709, 1772, 1809, 2033, 2127, 2323
MboI	GATC	6 cut(s)	1707, 1770, 1807, 2031, 2125, 2321
MboII	GAAGA	8 cut(s)	124, 177, 494, 781, 899, 1490, 1948, 2120
MfeI	CAATTG	2 cut(s)	1345, 1737
MflI	RGATCY	4 cut(s)	1770, 2031, 2125, 2321
MhlI	GDGCHC	7 cut(s)	52, 122, 937, 1246, 1261, 1273, 1647
MlsI	TGGCCA	1 cut(s)	1343
MluCI	AATT	8 cut(s)	385, 446, 969, 1023, 1204, 1290, 1345, 1737
MluNI	TGGCCA	1 cut(s)	1343
Mly113I	GGCGCC	1 cut(s)	224
MlyI	GAGTC	4 cut(s)	271, 1820, 1996, 2021
MmeI	TCCRAC	3 cut(s)	415, 1803, 1865
Mox20I	TGGCCA	1 cut(s)	1343
Mph1103I	ATGCAT	1 cut(s)	1467
MroI	TCCGGA	2 cut(s)	83, 2199
MroXI	GAANNNNTTC	1 cut(s)	337
MscI	TGGCCA	1 cut(s)	1343
MseI	TTAA	9 cut(s)	495, 564, 672, 972, 1026, 1214, 1814, 1913, 2285
MslI	CAYNNNNRTG	9 cut(s)	555, 963, 1299, 1422, 1470, 1721, 1779, 2243, 2258
Msp20I	TGGCCA	1 cut(s)	1343
MspI	CCGG	6 cut(s)	84, 216, 476, 1100, 1943, 2200
MspR9I	CCNGG	7 cut(s)	1005, 1412, 1520, 1635, 1900, 1944, 2187
MunI	CAATTG	2 cut(s)	1345, 1737
Mva1269I	GAATGC	5 cut(s)	143, 433, 604, 697, 1467
MvaI	CCWGG	6 cut(s)	1005, 1412, 1520, 1635, 1900, 2187
NarI	GGCGCC	1 cut(s)	224
NciI	CCSGG	1 cut(s)	1944
NcoI	CCATGG	2 cut(s)	234, 1774
NdeII	GATC	6 cut(s)	1707, 1770, 1807, 2031, 2125, 2321
NlaIV	GGNNCC	5 cut(s)	225, 528, 1524, 1772, 2323
NmuCI	GTSAC	3 cut(s)	787, 892, 1117
NsbI	TGCGCA	1 cut(s)	819
NsiI	ATGCAT	1 cut(s)	1467
NspI	RCATGY	2 cut(s)	1045, 1720
PaeI	GCATGC	1 cut(s)	1720
PagI	TCATGA	1 cut(s)	2098
PaqCI	CACCTGC	1 cut(s)	296
PciI	ACATGT	1 cut(s)	1041
PctI	GAATGC	5 cut(s)	143, 433, 604, 697, 1467
PdmI	GAANNNNTTC	1 cut(s)	337
PfeI	GAWTC	5 cut(s)	419, 547, 1088, 1322, 2291
PflMI	CCANNNNNTGG	2 cut(s)	844, 1884
PfoI	TCCNGGA	1 cut(s)	1898
PkrI	GCNGC	5 cut(s)	199, 474, 1390, 1565, 1804
PleI	GAGTC	4 cut(s)	270, 1820, 1996, 2020
PluTI	GGCGCC	1 cut(s)	227
PpsI	GAGTC	4 cut(s)	270, 1820, 1996, 2020
PscI	ACATGT	1 cut(s)	1041
PshBI	ATTAAT	1 cut(s)	1026
Psp6I	CCWGG	6 cut(s)	1003, 1410, 1518, 1633, 1898, 2185
PspEI	GGTNACC	1 cut(s)	833
PspFI	CCCAGC	1 cut(s)	1149
PspGI	CCWGG	6 cut(s)	1003, 1410, 1518, 1633, 1898, 2185
PspN4I	GGNNCC	5 cut(s)	225, 528, 1524, 1772, 2323
PspPI	GGNCC	3 cut(s)	231, 1516, 1637
PstI	CTGCAG	2 cut(s)	931, 1807
PstNI	CAGNNNCTG	2 cut(s)	1513, 2015
PsuI	RGATCY	4 cut(s)	1770, 2031, 2125, 2321
RsaI	GTAC	3 cut(s)	301, 1305, 2252
RsaNI	GTAC	3 cut(s)	300, 1304, 2251
RseI	CAYNNNNRTG	9 cut(s)	555, 963, 1299, 1422, 1470, 1721, 1779, 2243, 2258
SaqAI	TTAA	9 cut(s)	495, 564, 672, 972, 1026, 1214, 1814, 1913, 2285
SatI	GCNGC	5 cut(s)	198, 473, 1389, 1564, 1803
Sau3AI	GATC	6 cut(s)	1707, 1770, 1807, 2031, 2125, 2321
Sau96I	GGNCC	3 cut(s)	231, 1516, 1637
SchI	GAGTC	4 cut(s)	271, 1820, 1996, 2021
ScrFI	CCNGG	7 cut(s)	1005, 1412, 1520, 1635, 1900, 1944, 2187
SduI	GDGCHC	7 cut(s)	52, 122, 937, 1246, 1261, 1273, 1647
SexAI	ACCWGGT	1 cut(s)	2185
SfcI	CTRYAG	3 cut(s)	927, 1487, 1803
SfoI	GGCGCC	1 cut(s)	225
SinI	GGWCC	1 cut(s)	231
SmiMI	CAYNNNNRTG	9 cut(s)	555, 963, 1299, 1422, 1470, 1721, 1779, 2243, 2258
SmlI	CTYRAG	1 cut(s)	352
SmoI	CTYRAG	1 cut(s)	352
SphI	GCATGC	1 cut(s)	1720
Sse9I	AATT	8 cut(s)	385, 446, 969, 1023, 1204, 1290, 1345, 1737
SsiI	CCGC	8 cut(s)	43, 53, 141, 197, 286, 398, 602, 1140
SspDI	GGCGCC	1 cut(s)	223
SspMI	CTAG	1 cut(s)	1392
StyD4I	CCNGG	7 cut(s)	1003, 1410, 1518, 1633, 1898, 1942, 2185
StyI	CCWWGG	2 cut(s)	234, 1774
TaaI	ACNGT	6 cut(s)	60, 133, 554, 962, 1129, 2144
TaiI	ACGT	3 cut(s)	77, 119, 1383
TaqI	TCGA	7 cut(s)	29, 110, 265, 341, 389, 856, 1075
TaqII	GACCGA	1 cut(s)	219
TasI	AATT	8 cut(s)	385, 446, 969, 1023, 1204, 1290, 1345, 1737
TatI	WGTACW	2 cut(s)	1303, 2250
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	5 cut(s)	419, 547, 1088, 1322, 2291
Tru1I	TTAA	9 cut(s)	495, 564, 672, 972, 1026, 1214, 1814, 1913, 2285
Tru9I	TTAA	9 cut(s)	495, 564, 672, 972, 1026, 1214, 1814, 1913, 2285
TscAI	CASTG	5 cut(s)	849, 1278, 1765, 2149, 2245
TseFI	GTSAC	3 cut(s)	787, 892, 1117
TseI	GCWGC	4 cut(s)	472, 1388, 1563, 1802
Tsp45I	GTSAC	3 cut(s)	787, 892, 1117
TspGWI	ACGGA	1 cut(s)	345
TspRI	CASTG	5 cut(s)	849, 1278, 1765, 2149, 2245
Van91I	CCANNNNNTGG	2 cut(s)	844, 1884
VneI	GTGCAC	1 cut(s)	1269
VpaK11BI	GGWCC	1 cut(s)	231
VspI	ATTAAT	1 cut(s)	1026
XapI	RAATTY	3 cut(s)	385, 1204, 1290
XceI	RCATGY	2 cut(s)	1045, 1720
XmiI	GTMKAC	2 cut(s)	1046, 1847
XmnI	GAANNNNTTC	1 cut(s)	337
XspI	CTAG	1 cut(s)	1392
Zsp2I	ATGCAT	1 cut(s)	1467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.