Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0016620

Physical Location & Seq

Genomic Coordinates Reverse (-)

15371415 .. 15373976

Gene Structure 2562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001419

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2562 bp

ATGCTTCATATTTTGTTTGGTCCAAAACCCTCCCTTAAACCCTTCACCACCAAAATCACCAAAGCCTTCTTCTCCACTACACCATCCTCCACACCAACATTACTTCTAAAACAATGCAAGTCCCTACTCCAAGTCAACCTCGTCCACCAACACATCCTCGTCCGCGGCGTCTCCCACTCCCTCACCGACCTGATTGCCGCCTACGTAGCCTGCAATGCTCCTTCACAAGCCTTGTCTGTCCTCGAACGCCTCGCCCCACCGTGCCGCGCCACCGTTTACTGGTGGAACGTGCTTATCCGGAGCGCCGTGCGTTCTGGGTTTCTCGAAGACGTGCTCTGTCTCTACCGGAGAATGCAGAGACTTGGGTGGAAGCCTGACCATTATACTTACCCTTTTGTCTTCAAAGCCTGCGGCGAGCTTGGCTCGTTCTGGCGAGGCGCCTCGGTTCATGGGGCTGTGTGTGCGGCTGGGTTTGAGTCGAATGTGTTTGTTTGCAATGCGGTGGTGGCAATGTACGGCAGGTGTGGGGCTTTGGGGGATGCACGGAAGGTGTTCGACGAAATGCTTGAGAGAGGGATTGGGGATGTTGTGTCGTGGAATTCGATTACGGCGGTTTATGCTCAGAGTGGGGATTCCAAGAATGCGGTTGGAATGTTTGAATTGATGACTGGTGATTTTCGTGTGCAGCCAGATGCTGTTAGCTTGGTTAATGTTCTTCCTTCATGCGCTTTGCTTTGGGAACCGAAGTGGGGGATGCAGATTCACGGTTATGCTGTTAAGAGTGGGTTGGCTGAGGATGTGTTTGTGGGGAATGCGGTTATTGATATGTATGCCAAGTGTGGGATGATGGACGAGGCAAACAATGTATTTAATGGGATGAAGGTTAAGGATGTGGTTTCATGGAATGCTGTGGTAACTGGGTATTCTCAGGTTGGTAGATTTGAGAATGTTATTGGTTTATTTGAAAAGATGAGGGAGGCAAAGATTGAGTTGAATGTTGTCACTTGGAGTGCTGTGATTGCAGGGTATGCGCAGAGGGGACATGGTTACCAAGCACTGGATGTGTTTCGGCAAATGATGGCTTGTGGCTCTGAGCCAAATGTTGTGACACTTGTGTCTCTTCTTTCGGGTTGTGCCTCTGCAGGAGCACTAAATCGTGGCAGAGAAACTCACGGTTATGCAATTAAATGGATGCTGAACTTGGAAGGAAATGACCCTGGAAATGATATTATGGTAATTAATGGTTTGATTGACATGTATACTAAATGCAAGAGTGCCAATGTTGCTCGAACGATTTTTGATTCTCTATCACCAGACACAAAAAATGTGGTGACTTGGACGGTGATGATTGGCGGGTATGCCCAGCATGGTGAAGCAAATGAGGCACTTGAACTTTTCTACCAGATGCTAAGACAGAATTTTCCCTTAAAGCCAAATGGTTTTACTATATCTTGTGCCCTGATGGCCTGTGCTCGTCTGGGTGCATTGAGGTCTGGTAAACAAATTCATGCTTATGTACTACGCAATCAGTATGATTCTATGAAGCTGTTTGTGGCCAATTGCCTTATTGATATGTATTCCAAATCTGGAGACGTTGATGCTGCTAGAGTTGTGTTTGATAACCTGGAGCATCGGAATGAAGTTTCTTGGACTTCACTAATGACAGGTTATGGAATGCATGGTCGTGGTGAAGAAGCTCTACAAATTTTCGATGAGATGCAGAGACTGGGCCTGGTGCCTGATGCTGTAACATTTCTTGTTGTTCTCTATGCTTGCAGCCATTCTGGAATGATTGATGAGGGAATGAGATACTTCAATGGCATGAGCAAGAACTCTGGGGTTGTTCCTGGGCCAGAGCACTATGCTTGCATGGCTGACCTCTTGGGGCGTGCTGGTCGCTTGGATGACGCTATGAACCTGATCAAAAGCATGCCTATGGAACCGACCCCAATTGTATGGGTGGCCTTGCTCAGTGCTTGCAGGATCCATGGCAATGTTGAGCTTGGGGAATACGCTGCAGATCGGTTAACAGAGTTGGACTCAGAGAATGATGGTTCGTATACATTGCTTTCAAACATATACGCCAATGCCAAGCGTTGGAAAGATGTTTCGAGGATCAGATTGTTAATGAAACATACAGGCATCAAGAAGAGGCCGGGTTGCAGTTGGGTGCAAGGAAAGAAAGGTACAACAACCTTCTTTGTGGGTGATAGGACTGATCCACAGTCTGAAAAAATATATGAGATCCTTGCAGATTTGATAAAGCGCATCAAAGTCATGGGGTATGTTCCTGAGACAAGCTTTGCACTTCATGATGTTGATGATGAGGAGAAAGGAGATCTTCTCTTTGAACACAGTGAGAAGTTAGCTCTGGCCTATGCAATCCTAACGACCCCACCAGGTGTGCCTATCCGGATTACCAAGAACTTGCGTGTTTGTGGTGATTGCCACACTGCAATGAAGTACATATCCATGATTATTGAGCATGAAATCATATTGAGAGATTCAAGTCGCTTTCATCATTTCAAGAAAGGATCCTGCTCATGCCGAGGCTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

854

Amino Acids

94.61

Weight (kDa)

7.91

Isoelectric Point (pI)

36.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	92 - 137	1.5e-07	PPR repeat family
PPR_2	PF13041	296 - 337	2e-08	PPR repeat family
PPR	PF01535	299 - 328	9.8e-06	PPR repeat
PPR_3	PF13812	320 - 378	4.7e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	332 - 379	3.7e-10	PPR repeat family
PPR_2	PF13041	441 - 492	3.1e-09	PPR repeat family
PPR	PF01535	444 - 473	3.9e-08	PPR repeat
PPR_2	PF13041	546 - 593	8.8e-12	PPR repeat family
PPR	PF01535	548 - 578	6.3e-09	PPR repeat
E_motif	PF20431	663 - 725	1.1e-31	E motif
Eplus_motif	PF20430	730 - 757	1.7e-07	E+ motif
DYW_deaminase	PF14432	761 - 853	2.5e-46	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16860
fragaria_vesca	FvH4_5g33150
malus_domestica	MD06G1234400.v1.1
prunus_persica	Prupe.7G002900_v2.0.a1
pyrus_communis	pycom06g20910
rosa_chinensis	RchiOBHm_Chr7g0231411
rosa_laevigata	RLG00000001419
rosa_multiflora	Rmu_sc0003396.1_g000030 Rmu_sc0010066.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229340
rosa_rugosa	Rorug07G0266400
rosa_samantha	Rh7BG395100 Rh7CG440800
rosa_wichuraiana	Rw7G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	510
AasI	GACNNNNNNGTC	1 cut(s)	1114
Acc16I	TGCGCA	1 cut(s)	1032
Acc36I	ACCTGC	1 cut(s)	510
AccB1I	GGYRCC	2 cut(s)	437, 1735
AccB7I	CCANNNNNTGG	2 cut(s)	1057, 2097
AccI	GTMKAC	2 cut(s)	1259, 2060
AccII	CGCG	2 cut(s)	165, 267
AccIII	TCCGGA	2 cut(s)	297, 2412
AclWI	GGATC	7 cut(s)	1978, 1991, 2123, 2213, 2239, 2529, 2542
AcoI	YGGCCR	1 cut(s)	1554
AcsI	RAATTY	4 cut(s)	598, 1417, 1503, 1704
AcyI	GRCGYC	2 cut(s)	168, 438
AdeI	CACNNNGTG	1 cut(s)	2402
AfaI	GTAC	4 cut(s)	515, 1518, 2188, 2465
AfiI	CCNNNNNNNGG	5 cut(s)	279, 749, 840, 1057, 2097
AflIII	ACRYGT	1 cut(s)	1254
AjiI	CACGTC	1 cut(s)	331
AjnI	CCWGG	5 cut(s)	1216, 1623, 1731, 1846, 2398
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	7 cut(s)	418, 702, 1546, 1697, 2002, 2301, 2369
AluI	AGCT	7 cut(s)	418, 702, 1546, 1697, 2002, 2301, 2369
Alw21I	GWGCWC	4 cut(s)	336, 1150, 1474, 1860
Alw26I	GTCTC	7 cut(s)	175, 344, 352, 1122, 1584, 1717, 2288
AlwI	GGATC	7 cut(s)	1978, 1991, 2123, 2213, 2239, 2529, 2542
AlwNI	CAGNNNCTG	2 cut(s)	695, 1726
Aor13HI	TCCGGA	2 cut(s)	297, 2412
AoxI	GGCC	7 cut(s)	1464, 1554, 1729, 1850, 1962, 2153, 2373
ApeKI	GCWGC	4 cut(s)	685, 1601, 1776, 2015
ApoI	RAATTY	4 cut(s)	598, 1417, 1503, 1704
AseI	ATTAAT	1 cut(s)	1239
Asp700I	GAANNNNTTC	1 cut(s)	551
AspLEI	GCGC	6 cut(s)	269, 305, 440, 728, 1033, 2268
AspS9I	GGNCC	3 cut(s)	20, 1729, 1850
AsuC2I	CCSGG	1 cut(s)	2157
AvaII	GGWCC	1 cut(s)	20
BaeGI	GKGCMC	1 cut(s)	1459
BalI	TGGCCA	1 cut(s)	1556
BamHI	GGATCC	2 cut(s)	1983, 2534
BanI	GGYRCC	2 cut(s)	437, 1735
BarI	GAAGNNNNNNTAC	2 cut(s)	1683, 1715
BbsI	GAAGAC	2 cut(s)	333, 391
Bbv12I	GWGCWC	4 cut(s)	336, 1150, 1474, 1860
BbvCI	CCTCAGC	1 cut(s)	792
BbvI	GCAGC	4 cut(s)	697, 1588, 1788, 2002
BccI	CCATC	5 cut(s)	91, 841, 1072, 1456, 2045
BceAI	ACGGC	3 cut(s)	290, 532, 624
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	5 cut(s)	1218, 1625, 1733, 1848, 2400
BclI	TGATCA	1 cut(s)	1920
BcnI	CCSGG	1 cut(s)	2157
BcoDI	GTCTC	7 cut(s)	175, 344, 352, 1122, 1584, 1717, 2288
BfaI	CTAG	1 cut(s)	1605
BfmI	CTRYAG	2 cut(s)	1140, 2016
BfoI	RGCGCY	2 cut(s)	306, 441
BfuAI	ACCTGC	1 cut(s)	510
BglI	GCCNNNNNGGC	1 cut(s)	1463
BglII	AGATCT	1 cut(s)	2338
BisI	GCNGC	9 cut(s)	166, 198, 265, 412, 465, 686, 1602, 1777, 2016
BlsI	GCNGC	9 cut(s)	167, 199, 266, 413, 466, 687, 1603, 1778, 2017
Bme1390I	CCNGG	6 cut(s)	1218, 1625, 1733, 1848, 2157, 2400
Bme18I	GGWCC	1 cut(s)	20
BmgBI	CACGTC	1 cut(s)	331
BmgT120I	GGNCC	3 cut(s)	20, 1729, 1850
BmiI	GGNNCC	6 cut(s)	439, 741, 1737, 1941, 1985, 2536
BmrFI	CCNGG	6 cut(s)	1218, 1625, 1733, 1848, 2157, 2400
BmrI	ACTGGG	2 cut(s)	927, 1736
BmuI	ACTGGG	2 cut(s)	927, 1736
BpiI	GAAGAC	2 cut(s)	333, 391
BplI	GAGNNNNNCTC	6 cut(s)	407, 439, 2024, 2056, 2328, 2360
BpmI	CTGGAG	2 cut(s)	1608, 1646
Bpu10I	CCTNAGC	1 cut(s)	792
BpuEI	CTTGAG	1 cut(s)	587
BpuMI	CCSGG	1 cut(s)	2157
BsaAI	YACGTR	1 cut(s)	205
BsaHI	GRCGYC	2 cut(s)	168, 438
BsaJI	CCNNGG	6 cut(s)	163, 441, 1216, 1847, 1987, 2548
BsaWI	WCCGGW	3 cut(s)	297, 345, 2412
Bsc4I	CCNNNNNNNGG	5 cut(s)	279, 749, 840, 1057, 2097
Bse1I	ACTGG	5 cut(s)	284, 673, 922, 1062, 1731
Bse3DI	GCAATG	6 cut(s)	220, 502, 516, 1999, 2063, 2463
BseAI	TCCGGA	2 cut(s)	297, 2412
BseBI	CCWGG	5 cut(s)	1218, 1625, 1733, 1848, 2400
BseDI	CCNNGG	6 cut(s)	163, 441, 1216, 1847, 1987, 2548
BseLI	CCNNNNNNNGG	5 cut(s)	279, 749, 840, 1057, 2097
BseMI	GCAATG	6 cut(s)	220, 502, 516, 1999, 2063, 2463
BseMII	CTCAG	7 cut(s)	635, 783, 941, 1083, 1984, 2055, 2283
BseNI	ACTGG	5 cut(s)	284, 673, 922, 1062, 1731
BseRI	GAGGAG	1 cut(s)	2342
BseSI	GKGCMC	1 cut(s)	1459
BseXI	GCAGC	4 cut(s)	697, 1588, 1788, 2002
BseYI	CCCAGC	2 cut(s)	467, 1362
BsgI	GTGCAG	1 cut(s)	704
Bsh1236I	CGCG	2 cut(s)	165, 267
BshFI	GGCC	7 cut(s)	1466, 1556, 1731, 1852, 1964, 2155, 2375
BshNI	GGYRCC	2 cut(s)	437, 1735
BsiHKAI	GWGCWC	4 cut(s)	336, 1150, 1474, 1860
BsiSI	CCGG	4 cut(s)	298, 346, 2156, 2413
BslFI	GGGAC	2 cut(s)	106, 1053
BslI	CCNNNNNNNGG	5 cut(s)	279, 749, 840, 1057, 2097
BsmAI	GTCTC	7 cut(s)	175, 344, 352, 1122, 1584, 1717, 2288
BsmBI	CGTCTC	2 cut(s)	175, 1584
BsmFI	GGGAC	2 cut(s)	106, 1053
BsmI	GAATGC	5 cut(s)	357, 646, 817, 910, 1680
BsnI	GGCC	7 cut(s)	1466, 1556, 1731, 1852, 1964, 2155, 2375
Bsp1286I	GDGCHC	5 cut(s)	336, 1150, 1459, 1474, 1860
Bsp13I	TCCGGA	2 cut(s)	297, 2412
Bsp143I	GATC	8 cut(s)	1920, 1983, 2020, 2115, 2218, 2244, 2338, 2534
Bsp19I	CCATGG	1 cut(s)	1987
BspANI	GGCC	7 cut(s)	1466, 1556, 1731, 1852, 1964, 2155, 2375
BspCNI	CTCAG	7 cut(s)	634, 784, 940, 1084, 1983, 2054, 2284
BspEI	TCCGGA	2 cut(s)	297, 2412
BspFNI	CGCG	2 cut(s)	165, 267
BspHI	TCATGA	1 cut(s)	2311
BspLI	GGNNCC	6 cut(s)	439, 741, 1737, 1941, 1985, 2536
BspMAI	CTGCAG	2 cut(s)	1144, 2020
BspMI	ACCTGC	1 cut(s)	510
BspPI	GGATC	7 cut(s)	1978, 1991, 2123, 2213, 2239, 2529, 2542
BspT107I	GGYRCC	2 cut(s)	437, 1735
BsrDI	GCAATG	6 cut(s)	220, 502, 516, 1999, 2063, 2463
BsrI	ACTGG	5 cut(s)	284, 673, 922, 1062, 1731
BssECI	CCNNGG	6 cut(s)	163, 441, 1216, 1847, 1987, 2548
BssMI	GATC	8 cut(s)	1920, 1983, 2020, 2115, 2218, 2244, 2338, 2534
BssNAI	GTATAC	2 cut(s)	1260, 2061
BssNI	GRCGYC	2 cut(s)	168, 438
BssT1I	CCWWGG	1 cut(s)	1987
Bst1107I	GTATAC	2 cut(s)	1260, 2061
Bst2UI	CCWGG	5 cut(s)	1218, 1625, 1733, 1848, 2400
Bst4CI	ACNGT	7 cut(s)	261, 274, 767, 1175, 1342, 2226, 2357
Bst6I	CTCTTC	2 cut(s)	1125, 2144
BstACI	GRCGYC	2 cut(s)	168, 438
BstAPI	GCANNNNNTGC	1 cut(s)	1028
BstBAI	YACGTR	1 cut(s)	205
BstC8I	GCNNGC	8 cut(s)	211, 409, 416, 1774, 1867, 1890, 1931, 1978
BstDEI	CTNAG	8 cut(s)	621, 792, 927, 1092, 1409, 1970, 2041, 2292
BstDSI	CCRYGG	2 cut(s)	163, 1987
BstEII	GGTNACC	1 cut(s)	1046
BstFNI	CGCG	2 cut(s)	165, 267
BstH2I	RGCGCY	2 cut(s)	306, 441
BstHHI	GCGC	6 cut(s)	269, 305, 440, 728, 1033, 2268
BstKTI	GATC	8 cut(s)	1923, 1986, 2023, 2118, 2221, 2247, 2341, 2537
BstMAI	GTCTC	7 cut(s)	175, 344, 352, 1122, 1584, 1717, 2288
BstMBI	GATC	8 cut(s)	1920, 1983, 2020, 2115, 2218, 2244, 2338, 2534
BstNI	CCWGG	5 cut(s)	1218, 1625, 1733, 1848, 2400
BstNSI	RCATGY	2 cut(s)	1258, 1933
BstPI	GGTNACC	1 cut(s)	1046
BstSCI	CCNGG	6 cut(s)	1216, 1623, 1731, 1846, 2155, 2398
BstSFI	CTRYAG	2 cut(s)	1140, 2016
BstSLI	GKGCMC	1 cut(s)	1459
BstSNI	TACGTA	1 cut(s)	205
BstUI	CGCG	2 cut(s)	165, 267
BstV1I	GCAGC	4 cut(s)	697, 1588, 1788, 2002
BstV2I	GAAGAC	2 cut(s)	333, 391
BstX2I	RGATCY	4 cut(s)	1983, 2244, 2338, 2534
BstXI	CCANNNNNNTGG	1 cut(s)	1956
BstYI	RGATCY	4 cut(s)	1983, 2244, 2338, 2534
BstZ17I	GTATAC	2 cut(s)	1260, 2061
BsuRI	GGCC	7 cut(s)	1466, 1556, 1731, 1852, 1964, 2155, 2375
BtgI	CCRYGG	2 cut(s)	163, 1987
BtrI	CACGTC	1 cut(s)	331
BtsI	GCAGTG	1 cut(s)	2451
BtsIMutI	CAGTG	4 cut(s)	1055, 1978, 2362, 2451
BveI	ACCTGC	1 cut(s)	510
Cac8I	GCNNGC	8 cut(s)	211, 409, 416, 1774, 1867, 1890, 1931, 1978
CaiI	CAGNNNCTG	2 cut(s)	695, 1726
CciI	TCATGA	1 cut(s)	2311
CfoI	GCGC	6 cut(s)	269, 305, 440, 728, 1033, 2268
Cfr13I	GGNCC	3 cut(s)	20, 1729, 1850
Cfr42I	CCGCGG	1 cut(s)	166
CseI	GACGC	2 cut(s)	157, 1916
CsiI	ACCWGGT	1 cut(s)	2398
Csp6I	GTAC	4 cut(s)	514, 1517, 2187, 2464
CspCI	CAANNNNNGTGG	2 cut(s)	1308, 1343
CviQI	GTAC	4 cut(s)	514, 1517, 2187, 2464
DdeI	CTNAG	8 cut(s)	621, 792, 927, 1092, 1409, 1970, 2041, 2292
DinI	GGCGCC	1 cut(s)	439
DpnI	GATC	8 cut(s)	1922, 1985, 2022, 2117, 2220, 2246, 2340, 2536
DpnII	GATC	8 cut(s)	1920, 1983, 2020, 2115, 2218, 2244, 2338, 2534
DraIII	CACNNNGTG	1 cut(s)	2402
DrdI	GACNNNNNNGTC	1 cut(s)	1114
DseDI	GACNNNNNNGTC	1 cut(s)	1114
EaeI	YGGCCR	1 cut(s)	1554
Eam1104I	CTCTTC	2 cut(s)	1125, 2144
EarI	CTCTTC	2 cut(s)	1125, 2144
Eco105I	TACGTA	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	1987
Eco47I	GGWCC	1 cut(s)	20
Eco91I	GGTNACC	1 cut(s)	1046
EcoO65I	GGTNACC	1 cut(s)	1046
EcoRI	GAATTC	1 cut(s)	598
EcoRII	CCWGG	5 cut(s)	1216, 1623, 1731, 1846, 2398
EcoT14I	CCWWGG	1 cut(s)	1987
EcoT22I	ATGCAT	1 cut(s)	1680
EgeI	GGCGCC	1 cut(s)	439
EheI	GGCGCC	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	1987
Esp3I	CGTCTC	2 cut(s)	175, 1584
FalI	AAGNNNNNCTT	2 cut(s)	2325, 2357
FaqI	GGGAC	2 cut(s)	106, 1053
FauI	CCCGC	1 cut(s)	1346
FbaI	TGATCA	1 cut(s)	1920
FblI	GTMKAC	2 cut(s)	1259, 2060
Fnu4HI	GCNGC	9 cut(s)	166, 198, 265, 412, 465, 686, 1602, 1777, 2016
Fsp4HI	GCNGC	9 cut(s)	166, 198, 265, 412, 465, 686, 1602, 1777, 2016
FspBI	CTAG	1 cut(s)	1605
FspI	TGCGCA	1 cut(s)	1032
GlaI	GCGC	6 cut(s)	268, 304, 439, 727, 1032, 2267
GluI	GCNGC	9 cut(s)	166, 198, 265, 412, 465, 686, 1602, 1777, 2016
GsaI	CCCAGC	2 cut(s)	471, 1366
GsuI	CTGGAG	2 cut(s)	1608, 1646
HaeII	RGCGCY	2 cut(s)	306, 441
HaeIII	GGCC	7 cut(s)	1466, 1556, 1731, 1852, 1964, 2155, 2375
HapII	CCGG	4 cut(s)	298, 346, 2156, 2413
HgaI	GACGC	2 cut(s)	157, 1916
HhaI	GCGC	6 cut(s)	269, 305, 440, 728, 1033, 2268
Hin1I	GRCGYC	2 cut(s)	168, 438
Hin6I	GCGC	6 cut(s)	267, 303, 438, 726, 1031, 2266
HinP1I	GCGC	6 cut(s)	267, 303, 438, 726, 1031, 2266
HincII	GTYRAC	2 cut(s)	136, 2028
HindII	GTYRAC	2 cut(s)	136, 2028
HindIII	AAGCTT	1 cut(s)	2299
HinfI	GANTC	7 cut(s)	476, 632, 760, 1301, 1535, 2039, 2504
HpaI	GTTAAC	1 cut(s)	2028
HpaII	CCGG	4 cut(s)	298, 346, 2156, 2413
Hpy166II	GTNNAC	7 cut(s)	136, 145, 277, 1260, 1499, 2028, 2061
Hpy188I	TCNGA	6 cut(s)	624, 1093, 1635, 2044, 2120, 2230
Hpy188III	TCNNGA	9 cut(s)	298, 323, 1587, 1785, 2146, 2291, 2312, 2413, 2527
Hpy8I	GTNNAC	7 cut(s)	136, 145, 277, 1260, 1499, 2028, 2061
Hpy99I	CGWCG	1 cut(s)	560
HpyAV	CCTTC	8 cut(s)	52, 76, 231, 541, 729, 874, 1199, 2206
HpyCH4III	ACNGT	7 cut(s)	261, 274, 767, 1175, 1342, 2226, 2357
HpyCH4IV	ACGT	4 cut(s)	204, 288, 330, 1593
HpyF3I	CTNAG	8 cut(s)	621, 792, 927, 1092, 1409, 1970, 2041, 2292
HpySE526I	ACGT	4 cut(s)	204, 288, 330, 1593
Hsp92I	GRCGYC	2 cut(s)	168, 438
HspAI	GCGC	6 cut(s)	267, 303, 438, 726, 1031, 2266
KasI	GGCGCC	1 cut(s)	437
Kpn2I	TCCGGA	2 cut(s)	297, 2412
Ksp22I	TGATCA	1 cut(s)	1920
KspAI	GTTAAC	1 cut(s)	2028
KspI	CCGCGG	1 cut(s)	166
Kzo9I	GATC	8 cut(s)	1920, 1983, 2020, 2115, 2218, 2244, 2338, 2534
LmnI	GCTCC	4 cut(s)	223, 300, 1145, 1627
Lsp1109I	GCAGC	4 cut(s)	697, 1588, 1788, 2002
MabI	ACCWGGT	1 cut(s)	2398
MaeI	CTAG	1 cut(s)	1605
MaeII	ACGT	4 cut(s)	204, 288, 330, 1593
MaeIII	GTNAC	6 cut(s)	913, 1000, 1046, 1105, 1330, 1747
MalI	GATC	8 cut(s)	1922, 1985, 2022, 2117, 2220, 2246, 2340, 2536
MboI	GATC	8 cut(s)	1920, 1983, 2020, 2115, 2218, 2244, 2338, 2534
MboII	GAAGA	8 cut(s)	61, 338, 391, 707, 1112, 1703, 2161, 2333
MfeI	CAATTG	2 cut(s)	1558, 1950
MflI	RGATCY	4 cut(s)	1983, 2244, 2338, 2534
MhlI	GDGCHC	5 cut(s)	336, 1150, 1459, 1474, 1860
MlsI	TGGCCA	1 cut(s)	1556
MluCI	AATT	9 cut(s)	598, 659, 1182, 1236, 1417, 1503, 1558, 1704, 1950
MluNI	TGGCCA	1 cut(s)	1556
Mly113I	GGCGCC	1 cut(s)	438
MlyI	GAGTC	2 cut(s)	485, 2033
MmeI	TCCRAC	3 cut(s)	628, 2016, 2078
Mox20I	TGGCCA	1 cut(s)	1556
Mph1103I	ATGCAT	1 cut(s)	1680
MroI	TCCGGA	2 cut(s)	297, 2412
MroXI	GAANNNNTTC	1 cut(s)	551
MscI	TGGCCA	1 cut(s)	1556
MslI	CAYNNNNRTG	9 cut(s)	768, 1176, 1512, 1635, 1683, 1934, 1992, 2456, 2471
Msp20I	TGGCCA	1 cut(s)	1556
MspA1I	CMGCKG	1 cut(s)	165
MspI	CCGG	4 cut(s)	298, 346, 2156, 2413
MspR9I	CCNGG	6 cut(s)	1218, 1625, 1733, 1848, 2157, 2400
MunI	CAATTG	2 cut(s)	1558, 1950
Mva1269I	GAATGC	5 cut(s)	357, 646, 817, 910, 1680
MvaI	CCWGG	5 cut(s)	1218, 1625, 1733, 1848, 2400
MvnI	CGCG	2 cut(s)	165, 267
NarI	GGCGCC	1 cut(s)	438
NciI	CCSGG	1 cut(s)	2157
NcoI	CCATGG	1 cut(s)	1987
NdeII	GATC	8 cut(s)	1920, 1983, 2020, 2115, 2218, 2244, 2338, 2534
NlaIV	GGNNCC	6 cut(s)	439, 741, 1737, 1941, 1985, 2536
NmuCI	GTSAC	3 cut(s)	1000, 1105, 1330
NsbI	TGCGCA	1 cut(s)	1032
NsiI	ATGCAT	1 cut(s)	1680
NspI	RCATGY	2 cut(s)	1258, 1933
PaeI	GCATGC	1 cut(s)	1933
PagI	TCATGA	1 cut(s)	2311
PaqCI	CACCTGC	1 cut(s)	510
PciI	ACATGT	1 cut(s)	1254
PcsI	WCGNNNNNNNCGW	2 cut(s)	165, 599
PctI	GAATGC	5 cut(s)	357, 646, 817, 910, 1680
PdmI	GAANNNNTTC	1 cut(s)	551
PfeI	GAWTC	5 cut(s)	632, 760, 1301, 1535, 2504
PflMI	CCANNNNNTGG	2 cut(s)	1057, 2097
PkrI	GCNGC	9 cut(s)	167, 199, 266, 413, 466, 687, 1603, 1778, 2017
PleI	GAGTC	2 cut(s)	484, 2033
PluTI	GGCGCC	1 cut(s)	441
PpsI	GAGTC	2 cut(s)	484, 2033
Ppu21I	YACGTR	1 cut(s)	205
PscI	ACATGT	1 cut(s)	1254
PshBI	ATTAAT	1 cut(s)	1239
Psp6I	CCWGG	5 cut(s)	1216, 1623, 1731, 1846, 2398
PspEI	GGTNACC	1 cut(s)	1046
PspFI	CCCAGC	2 cut(s)	467, 1362
PspGI	CCWGG	5 cut(s)	1216, 1623, 1731, 1846, 2398
PspN4I	GGNNCC	6 cut(s)	439, 741, 1737, 1941, 1985, 2536
PspPI	GGNCC	3 cut(s)	20, 1729, 1850
PstI	CTGCAG	2 cut(s)	1144, 2020
PstNI	CAGNNNCTG	2 cut(s)	695, 1726
PsuI	RGATCY	4 cut(s)	1983, 2244, 2338, 2534
RsaI	GTAC	4 cut(s)	515, 1518, 2188, 2465
RsaNI	GTAC	4 cut(s)	514, 1517, 2187, 2464
RseI	CAYNNNNRTG	9 cut(s)	768, 1176, 1512, 1635, 1683, 1934, 1992, 2456, 2471
SacII	CCGCGG	1 cut(s)	166
SatI	GCNGC	9 cut(s)	166, 198, 265, 412, 465, 686, 1602, 1777, 2016
Sau3AI	GATC	8 cut(s)	1920, 1983, 2020, 2115, 2218, 2244, 2338, 2534
Sau96I	GGNCC	3 cut(s)	20, 1729, 1850
SchI	GAGTC	2 cut(s)	485, 2033
ScrFI	CCNGG	6 cut(s)	1218, 1625, 1733, 1848, 2157, 2400
SduI	GDGCHC	5 cut(s)	336, 1150, 1459, 1474, 1860
SexAI	ACCWGGT	1 cut(s)	2398
SfcI	CTRYAG	2 cut(s)	1140, 2016
SfoI	GGCGCC	1 cut(s)	439
Sfr303I	CCGCGG	1 cut(s)	166
SgrBI	CCGCGG	1 cut(s)	166
SinI	GGWCC	1 cut(s)	20
SmiMI	CAYNNNNRTG	9 cut(s)	768, 1176, 1512, 1635, 1683, 1934, 1992, 2456, 2471
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
SnaBI	TACGTA	1 cut(s)	205
SphI	GCATGC	1 cut(s)	1933
Sse9I	AATT	9 cut(s)	598, 659, 1182, 1236, 1417, 1503, 1558, 1704, 1950
SspDI	GGCGCC	1 cut(s)	437
SspMI	CTAG	1 cut(s)	1605
StyD4I	CCNGG	6 cut(s)	1216, 1623, 1731, 1846, 2155, 2398
StyI	CCWWGG	1 cut(s)	1987
TaaI	ACNGT	7 cut(s)	261, 274, 767, 1175, 1342, 2226, 2357
TaiI	ACGT	4 cut(s)	207, 291, 333, 1596
TaqI	TCGA	8 cut(s)	243, 324, 479, 555, 602, 1288, 1710, 2111
TasI	AATT	9 cut(s)	598, 659, 1182, 1236, 1417, 1503, 1558, 1704, 1950
TatI	WGTACW	2 cut(s)	1516, 2463
TauI	GCSGC	5 cut(s)	168, 200, 267, 414, 467
TfiI	GAWTC	5 cut(s)	632, 760, 1301, 1535, 2504
TscAI	CASTG	4 cut(s)	1062, 1978, 2362, 2458
TseFI	GTSAC	3 cut(s)	1000, 1105, 1330
TseI	GCWGC	4 cut(s)	685, 1601, 1776, 2015
Tsp45I	GTSAC	3 cut(s)	1000, 1105, 1330
TspGWI	ACGGA	1 cut(s)	559
TspRI	CASTG	4 cut(s)	1062, 1978, 2362, 2458
Van91I	CCANNNNNTGG	2 cut(s)	1057, 2097
VpaK11BI	GGWCC	1 cut(s)	20
VspI	ATTAAT	1 cut(s)	1239
XapI	RAATTY	4 cut(s)	598, 1417, 1503, 1704
XceI	RCATGY	2 cut(s)	1258, 1933
XmiI	GTMKAC	2 cut(s)	1259, 2060
XmnI	GAANNNNTTC	1 cut(s)	551
XspI	CTAG	1 cut(s)	1605
Zsp2I	ATGCAT	1 cut(s)	1680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.