AT5G17280

Oxidoreductase-like protein, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013893
Physical Location & Seq
Forward (+)
5686299 .. 5686895
597 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17280.1

Sequence Viewer

Length: 408 bp
ATGGTTGTTGTGTCTCTTCTTCCTCGAATCTCGATCGTTACATCACCGGGTTCTAGCCTTCACGATGTGCTTTTGAGCATGAGATTTGGTTTGACGCGACATCTCCCTCTCAAACGATCTTTCTCCAATTATTCAATCACTTCCGTATCTCCAGAACAACAGCTCAAATCTCCGGTGACCATGGCGACGACCGAGAGCAAGAATCTTGTAGAAGCTTCCAAGGAGGAGACAAACAAGAAGGAGACAGAAGATAAGAAGGAGGTGGGAGTTTCGGTTCCTCCACCGCCAGAGAAACCAGAGCCTGGCGATTGTTGCGGTAGCGGTTGCGTCCGATGCGTTTGGGATGTTTATTACGATGAGCTCGAAGATTACAACAAGCAGCTTTCTGGAGAAACTAAATCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxidored-like

Protein Analysis

135

Amino Acids

14.92

Weight (kDa)

5.43

Isoelectric Point (pI)

55.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored-like PF09791 88 - 129 2e-17 Oxidoreductase-like protein, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17280 AT5G20500
fragaria_vesca FvH4_4g06520
malus_domestica MD16G1241300.v1.1
prunus_persica Prupe.1G068000_v2.0.a1
pyrus_communis pycom16g20210
rosa_chinensis RchiOBHm_Chr4g0398351
rosa_laevigata RLG00000009363
rosa_multiflora Rmu_sc0004094.1_g000041 Rmu_ssc0000240.1_g000046
rosa_roxburghii Rroxscaffold_5G00343350
rosa_rugosa Rorug04G0007900
rosa_samantha Rh4AG085700 Rh4BG082700 Rh4CG093400 Rh4DG077600
rosa_wichuraiana Rw4G007150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 302
AccII CGCG 1 cut(s) 97
AciI CCGC 3 cut(s) 284, 315, 321
AdeI CACNNNGTG 1 cut(s) 67
AfiI CCNNNNNNNGG 1 cut(s) 302
AgsI TTSAA 1 cut(s) 135
AjnI CCWGG 1 cut(s) 301
AloI GAACNNNNNNTCC 2 cut(s) 258, 290
AluBI AGCT 4 cut(s) 163, 215, 361, 382
AluI AGCT 4 cut(s) 163, 215, 361, 382
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 3 cut(s) 18, 221, 236
AlwNI CAGNNNCTG 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 379
AsuC2I CCSGG 1 cut(s) 48
AsuHPI GGTGA 2 cut(s) 36, 187
BaeI ACNNNNGTAYC 2 cut(s) 129, 162
BanII GRGCYC 1 cut(s) 363
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 1 cut(s) 391
BciT130I CCWGG 1 cut(s) 303
BcnI CCSGG 1 cut(s) 48
BcoDI GTCTC 3 cut(s) 18, 221, 236
BfaI CTAG 1 cut(s) 54
BisI GCNGC 1 cut(s) 380
BlsI GCNGC 1 cut(s) 381
Bme1390I CCNGG 2 cut(s) 48, 303
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 2 cut(s) 48, 303
BmsI GCATC 1 cut(s) 323
BpmI CTGGAG 2 cut(s) 135, 408
BpuMI CCSGG 1 cut(s) 48
BsaJI CCNNGG 2 cut(s) 180, 219
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bsc4I CCNNNNNNNGG 1 cut(s) 302
BseBI CCWGG 1 cut(s) 303
BseDI CCNNGG 2 cut(s) 180, 219
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 1 cut(s) 302
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 1 cut(s) 391
Bsh1236I CGCG 1 cut(s) 97
Bsh1285I CGRYCG 2 cut(s) 36, 192
BsiEI CGRYCG 2 cut(s) 36, 192
BsiHKAI GWGCWC 1 cut(s) 363
BsiSI CCGG 2 cut(s) 47, 173
BslI CCNNNNNNNGG 1 cut(s) 302
BsmAI GTCTC 3 cut(s) 18, 221, 236
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 2 cut(s) 33, 116
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 3 cut(s) 284, 315, 321
BspFNI CGCG 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 276
BssECI CCNNGG 2 cut(s) 180, 219
BssMI GATC 2 cut(s) 33, 116
BssT1I CCWWGG 2 cut(s) 180, 219
Bst2UI CCWGG 1 cut(s) 303
Bst6I CTCTTC 1 cut(s) 21
BstDSI CCRYGG 1 cut(s) 180
BstEII GGTNACC 1 cut(s) 175
BstF5I GGATG 1 cut(s) 349
BstFNI CGCG 1 cut(s) 97
BstKTI GATC 2 cut(s) 36, 119
BstMAI GTCTC 3 cut(s) 18, 221, 236
BstMBI GATC 2 cut(s) 33, 116
BstMCI CGRYCG 2 cut(s) 36, 192
BstMWI GCNNNNNNNGC 2 cut(s) 312, 333
BstNI CCWGG 1 cut(s) 303
BstPI GGTNACC 1 cut(s) 175
BstSCI CCNGG 2 cut(s) 46, 301
BstUI CGCG 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 391
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 1 cut(s) 349
CaiI CAGNNNCTG 1 cut(s) 302
CseI GACGC 2 cut(s) 103, 316
CviAII CATG 2 cut(s) 79, 181
CviJI RGCY 6 cut(s) 57, 163, 215, 301, 361, 382
CviKI_1 RGCY 6 cut(s) 57, 163, 215, 301, 361, 382
DpnI GATC 2 cut(s) 35, 118
DpnII GATC 2 cut(s) 33, 116
DraIII CACNNNGTG 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Ecl136II GAGCTC 1 cut(s) 361
Eco130I CCWWGG 2 cut(s) 180, 219
Eco24I GRGCYC 1 cut(s) 363
Eco53kI GAGCTC 1 cut(s) 361
Eco91I GGTNACC 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 361
EcoO65I GGTNACC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 301
EcoT14I CCWWGG 2 cut(s) 180, 219
EcoT38I GRGCYC 1 cut(s) 363
ErhI CCWWGG 2 cut(s) 180, 219
FaeI CATG 2 cut(s) 82, 184
FaiI YATR 2 cut(s) 80, 182
FatI CATG 2 cut(s) 78, 180
Fnu4HI GCNGC 1 cut(s) 380
FokI GGATG 1 cut(s) 356
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 1 cut(s) 380
FspBI CTAG 1 cut(s) 54
GluI GCNGC 1 cut(s) 380
GsuI CTGGAG 2 cut(s) 135, 408
HapII CCGG 2 cut(s) 47, 173
HgaI GACGC 2 cut(s) 103, 316
Hin1II CATG 2 cut(s) 82, 184
HindIII AAGCTT 1 cut(s) 213
HinfI GANTC 2 cut(s) 27, 202
HpaII CCGG 2 cut(s) 47, 173
HphI GGTGA 2 cut(s) 36, 187
Hpy188I TCNGA 1 cut(s) 332
Hpy188III TCNNGA 4 cut(s) 31, 62, 152, 387
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 3 cut(s) 68, 232, 250
HpyF10VI GCNNNNNNNGC 2 cut(s) 312, 333
Hsp92II CATG 2 cut(s) 82, 184
Kzo9I GATC 2 cut(s) 33, 116
LpnPI CCDG 8 cut(s) 60, 165, 186, 288, 300, 309, 315, 372
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 1 cut(s) 323
MaeI CTAG 1 cut(s) 54
MaeIII GTNAC 2 cut(s) 37, 175
MalI GATC 2 cut(s) 35, 118
MboI GATC 2 cut(s) 33, 116
MboII GAAGA 4 cut(s) 8, 11, 260, 377
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 2 cut(s) 127, 402
MnlI CCTC 5 cut(s) 33, 117, 217, 253, 288
MspI CCGG 2 cut(s) 47, 173
MspR9I CCNGG 2 cut(s) 48, 303
MvaI CCWGG 1 cut(s) 303
MvnI CGCG 1 cut(s) 97
MwoI GCNNNNNNNGC 2 cut(s) 312, 333
NciI CCSGG 1 cut(s) 48
NcoI CCATGG 1 cut(s) 180
NdeII GATC 2 cut(s) 33, 116
NlaIII CATG 2 cut(s) 82, 184
NlaIV GGNNCC 1 cut(s) 276
NmuCI GTSAC 1 cut(s) 175
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PfeI GAWTC 2 cut(s) 27, 202
PflMI CCANNNNNTGG 1 cut(s) 302
PkrI GCNGC 1 cut(s) 381
Ple19I CGATCG 1 cut(s) 36
Psp124BI GAGCTC 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 301
PspEI GGTNACC 1 cut(s) 175
PspGI CCWGG 1 cut(s) 301
PspN4I GGNNCC 1 cut(s) 276
PstNI CAGNNNCTG 1 cut(s) 302
PvuI CGATCG 1 cut(s) 36
SacI GAGCTC 1 cut(s) 363
SatI GCNGC 1 cut(s) 380
Sau3AI GATC 2 cut(s) 33, 116
ScrFI CCNGG 2 cut(s) 48, 303
SduI GDGCHC 1 cut(s) 363
SetI ASST 5 cut(s) 165, 217, 264, 363, 384
SfaNI GCATC 1 cut(s) 323
Sse9I AATT 2 cut(s) 127, 402
SsiI CCGC 3 cut(s) 284, 315, 321
SspMI CTAG 1 cut(s) 54
SstI GAGCTC 1 cut(s) 363
StyD4I CCNGG 2 cut(s) 46, 301
StyI CCWWGG 2 cut(s) 180, 219
TaqI TCGA 3 cut(s) 25, 32, 363
TaqII GACCGA 1 cut(s) 206
TasI AATT 2 cut(s) 127, 402
TfiI GAWTC 2 cut(s) 27, 202
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 1 cut(s) 379
Tsp45I GTSAC 1 cut(s) 175
TspGWI ACGGA 1 cut(s) 133
Van91I CCANNNNNTGG 1 cut(s) 302
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.