AT5G20500

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013893
Physical Location & Seq
Forward (+)
6938417 .. 6939848
1432 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G20500.1

Sequence Viewer

Length: 408 bp
ATGACAATGTTTAGATCTATCTCCATGGTAATGCTGCTCGTCGCACTAGTTACATTCATTTCTATGGTTTCTTCTGCTGCTTCGTCCCCAGAAGCCGACTTTGTTAAGAAGACTATCTCTTCCCATAAGATCGTCATTTTCTCCAAATCCTACTGCCCCTACTGCAAGAAAGCTAAATCAGTGTTCAGAGAGCTGGATCAAGTTCCTTATGTTGTCGAGCTTGATGAAAGAGAAGATGGTTGGAGCATCCAGACTGCACTTGGAGAGATTGTTGGAAGGCGAACAGTACCGCAAGTCTTCATTAACGGAAAACATCTCGGAGGATCAGATGATACCGTAGATGCGTATGAGAGCGGTGAACTCGCCAAGCTTCTTGGTGTTTCCGGGAACAAAGAAGCTGAACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

135

Amino Acids

14.83

Weight (kDa)

5.68

Isoelectric Point (pI)

29.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 44 - 105 6.8e-19 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17280 AT5G20500
fragaria_vesca FvH4_4g06520
malus_domestica MD16G1241300.v1.1
prunus_persica Prupe.1G068000_v2.0.a1
pyrus_communis pycom16g20210
rosa_chinensis RchiOBHm_Chr4g0398351
rosa_laevigata RLG00000009363
rosa_multiflora Rmu_sc0004094.1_g000041 Rmu_ssc0000240.1_g000046
rosa_roxburghii Rroxscaffold_5G00343350
rosa_rugosa Rorug04G0007900
rosa_samantha Rh4AG085700 Rh4BG082700 Rh4CG093400 Rh4DG077600
rosa_wichuraiana Rw4G007150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 354
AciI CCGC 2 cut(s) 290, 354
AclWI GGATC 2 cut(s) 204, 331
AfaI GTAC 1 cut(s) 288
AhlI ACTAGT 1 cut(s) 46
AluBI AGCT 5 cut(s) 173, 193, 220, 370, 398
AluI AGCT 5 cut(s) 173, 193, 220, 370, 398
AlwI GGATC 2 cut(s) 204, 331
ApeKI GCWGC 2 cut(s) 34, 77
AsuC2I CCSGG 1 cut(s) 385
AsuHPI GGTGA 1 cut(s) 368
BbsI GAAGAC 2 cut(s) 116, 289
BbvI GCAGC 2 cut(s) 21, 64
BccI CCATC 1 cut(s) 230
BcnI CCSGG 1 cut(s) 385
BcuI ACTAGT 1 cut(s) 46
BfaI CTAG 2 cut(s) 47, 406
BglII AGATCT 1 cut(s) 14
BisI GCNGC 2 cut(s) 35, 78
BlsI GCNGC 2 cut(s) 36, 79
Bme1390I CCNGG 1 cut(s) 385
BmrFI CCNGG 1 cut(s) 385
BmsI GCATC 2 cut(s) 255, 331
BpiI GAAGAC 2 cut(s) 116, 289
BpuMI CCSGG 1 cut(s) 385
BsaJI CCNNGG 1 cut(s) 24
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 246
BseXI GCAGC 2 cut(s) 21, 64
BsgI GTGCAG 1 cut(s) 240
BsiSI CCGG 1 cut(s) 384
BslFI GGGAC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 70
Bsp143I GATC 4 cut(s) 14, 129, 196, 323
Bsp19I CCATGG 1 cut(s) 24
BspACI CCGC 2 cut(s) 290, 354
BspPI GGATC 2 cut(s) 204, 331
BsrBI CCGCTC 1 cut(s) 354
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 4 cut(s) 14, 129, 196, 323
BssT1I CCWWGG 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 286, 337
Bst6I CTCTTC 1 cut(s) 124
BstDSI CCRYGG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 246
BstKTI GATC 4 cut(s) 17, 132, 199, 326
BstMBI GATC 4 cut(s) 14, 129, 196, 323
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 383
BstV1I GCAGC 2 cut(s) 21, 64
BstV2I GAAGAC 2 cut(s) 116, 289
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BtgI CCRYGG 1 cut(s) 24
BtsCI GGATG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 186
Csp6I GTAC 1 cut(s) 287
CviAII CATG 1 cut(s) 25
CviJI RGCY 6 cut(s) 95, 173, 193, 220, 370, 398
CviKI_1 RGCY 6 cut(s) 95, 173, 193, 220, 370, 398
CviQI GTAC 1 cut(s) 287
DpnI GATC 4 cut(s) 16, 131, 198, 325
DpnII GATC 4 cut(s) 14, 129, 196, 323
Eam1104I CTCTTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 124
Eco130I CCWWGG 1 cut(s) 24
EcoT14I CCWWGG 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 1 cut(s) 28
FaiI YATR 5 cut(s) 26, 65, 126, 210, 348
FaqI GGGAC 1 cut(s) 70
FatI CATG 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 35, 78
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 2 cut(s) 35, 78
FspBI CTAG 2 cut(s) 47, 406
GluI GCNGC 2 cut(s) 35, 78
HapII CCGG 1 cut(s) 384
Hin1II CATG 1 cut(s) 28
HindIII AAGCTT 1 cut(s) 368
HpaII CCGG 1 cut(s) 384
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 1 cut(s) 359
Hpy188I TCNGA 3 cut(s) 188, 320, 328
Hpy188III TCNNGA 1 cut(s) 250
Hpy8I GTNNAC 1 cut(s) 359
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 270
HpyCH4III ACNGT 2 cut(s) 286, 337
HpyCH4V TGCA 2 cut(s) 165, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
Hsp92II CATG 1 cut(s) 28
Kzo9I GATC 4 cut(s) 14, 129, 196, 323
LmnI GCTCC 1 cut(s) 243
LpnPI CCDG 4 cut(s) 102, 179, 263, 397
Lsp1109I GCAGC 2 cut(s) 21, 64
LweI GCATC 2 cut(s) 255, 331
MaeI CTAG 2 cut(s) 47, 406
MaeIII GTNAC 1 cut(s) 49
MalI GATC 4 cut(s) 16, 131, 198, 325
MbiI CCGCTC 1 cut(s) 354
MboI GATC 4 cut(s) 14, 129, 196, 323
MboII GAAGA 5 cut(s) 63, 111, 121, 245, 289
MflI RGATCY 1 cut(s) 14
MmeI TCCRAC 2 cut(s) 221, 253
MnlI CCTC 1 cut(s) 314
MseI TTAA 2 cut(s) 105, 303
MslI CAYNNNNRTG 2 cut(s) 29, 62
MspI CCGG 1 cut(s) 384
MspR9I CCNGG 1 cut(s) 385
MwoI GCNNNNNNNGC 1 cut(s) 162
NciI CCSGG 1 cut(s) 385
NcoI CCATGG 1 cut(s) 24
NdeII GATC 4 cut(s) 14, 129, 196, 323
NlaIII CATG 1 cut(s) 28
PfoI TCCNGGA 1 cut(s) 383
PkrI GCNGC 2 cut(s) 36, 79
PsuI RGATCY 1 cut(s) 14
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
RseI CAYNNNNRTG 2 cut(s) 29, 62
SaqAI TTAA 2 cut(s) 105, 303
SatI GCNGC 2 cut(s) 35, 78
Sau3AI GATC 4 cut(s) 14, 129, 196, 323
ScrFI CCNGG 1 cut(s) 385
SetI ASST 5 cut(s) 175, 195, 222, 372, 400
SfaNI GCATC 2 cut(s) 255, 331
SmiMI CAYNNNNRTG 2 cut(s) 29, 62
SpeI ACTAGT 1 cut(s) 46
SsiI CCGC 2 cut(s) 290, 354
SspMI CTAG 2 cut(s) 47, 406
StyD4I CCNGG 1 cut(s) 383
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 2 cut(s) 286, 337
TaqI TCGA 1 cut(s) 216
Tru1I TTAA 2 cut(s) 105, 303
Tru9I TTAA 2 cut(s) 105, 303
TscAI CASTG 1 cut(s) 186
TseI GCWGC 2 cut(s) 34, 77
TspDTI ATGAA 3 cut(s) 46, 240, 289
TspGWI ACGGA 1 cut(s) 321
TspRI CASTG 1 cut(s) 186
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XspI CTAG 2 cut(s) 47, 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.