RLG00000009363

protein disulfide oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0013893
Physical Location & Seq
Reverse (-)
51581112 .. 51582413
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009363

Sequence Viewer

Length: 420 bp
ATGGCTTCATTCAAGACGGTGTTATCGGTAATTGCAGCAACTGTGTTACTCACCTCTCTTCTTTGGAAACTCACATCTTCATCCTCATCTTCTTCCGCCGAGTCTATCGATTTCATCAAGAAGACCATCTCCTCCAACAAGATCGCCATCTTCTCCAAGTCCTATTGCCCATACTGTAAAAGGGCAAAGGCTGTTTTCAAAGAGTTGAAACAAGTGCCCTATGTGGTTGAGCTTGATGAGAGAGCTGATGGTCCGGACATCCAAGATGCTCTACGTGAGCTTATTGGAAGGCGTACTGTTCCACAGGTGTTTGTAAATGGAAAGTACATTGGGGGATCTGATGATACTGTTGCAGCATATGAAAGTGGAGAACTGGCTAAGCTTCTGGGCCTTGAGGTTGGGCATAAGGATGATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

140

Amino Acids

15.15

Weight (kDa)

7.71

Isoelectric Point (pI)

33.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 48 - 110 3.2e-19 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17280 AT5G20500
fragaria_vesca FvH4_4g06520
malus_domestica MD16G1241300.v1.1
prunus_persica Prupe.1G068000_v2.0.a1
pyrus_communis pycom16g20210
rosa_chinensis RchiOBHm_Chr4g0398351
rosa_laevigata RLG00000009363
rosa_multiflora Rmu_sc0004094.1_g000041 Rmu_ssc0000240.1_g000046
rosa_roxburghii Rroxscaffold_5G00343350
rosa_rugosa Rorug04G0007900
rosa_samantha Rh4AG085700 Rh4BG082700 Rh4CG093400 Rh4DG077600
rosa_wichuraiana Rw4G007150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 253
AciI CCGC 1 cut(s) 96
AclWI GGATC 1 cut(s) 343
AfaI GTAC 2 cut(s) 295, 326
AgsI TTSAA 3 cut(s) 13, 199, 208
AluBI AGCT 4 cut(s) 232, 245, 280, 382
AluI AGCT 4 cut(s) 232, 245, 280, 382
AlwI GGATC 1 cut(s) 343
AlwNI CAGNNNCTG 1 cut(s) 41
Aor13HI TCCGGA 1 cut(s) 253
AoxI GGCC 1 cut(s) 388
ApeKI GCWGC 2 cut(s) 35, 353
AspS9I GGNCC 2 cut(s) 251, 388
AsuHPI GGTGA 1 cut(s) 43
AvaII GGWCC 1 cut(s) 251
BaeGI GKGCMC 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 128
BbvI GCAGC 2 cut(s) 47, 365
BccI CCATC 3 cut(s) 134, 155, 242
BisI GCNGC 2 cut(s) 36, 354
BlpI GCTNAGC 1 cut(s) 378
BlsI GCNGC 2 cut(s) 37, 355
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 2 cut(s) 251, 388
BmsI GCATC 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 128
Bpu1102I GCTNAGC 1 cut(s) 378
BpuEI CTTGAG 1 cut(s) 413
Bsa29I ATCGAT 1 cut(s) 108
BsaAI YACGTR 1 cut(s) 275
BsaBI GATNNNNATC 1 cut(s) 146
BsaWI WCCGGW 1 cut(s) 253
Bse1I ACTGG 1 cut(s) 378
Bse8I GATNNNNATC 1 cut(s) 146
BseAI TCCGGA 1 cut(s) 253
BseCI ATCGAT 1 cut(s) 108
BseGI GGATG 3 cut(s) 80, 258, 415
BseJI GATNNNNATC 1 cut(s) 146
BseNI ACTGG 1 cut(s) 378
BseRI GAGGAG 1 cut(s) 121
BseSI GKGCMC 1 cut(s) 219
BseXI GCAGC 2 cut(s) 47, 365
BshFI GGCC 1 cut(s) 390
BshVI ATCGAT 1 cut(s) 108
BsiSI CCGG 1 cut(s) 254
BsnI GGCC 1 cut(s) 390
Bsp1286I GDGCHC 1 cut(s) 219
Bsp13I TCCGGA 1 cut(s) 253
Bsp143I GATC 3 cut(s) 141, 335, 412
Bsp1720I GCTNAGC 1 cut(s) 378
BspACI CCGC 1 cut(s) 96
BspANI GGCC 1 cut(s) 390
BspDI ATCGAT 1 cut(s) 108
BspEI TCCGGA 1 cut(s) 253
BspPI GGATC 1 cut(s) 343
BsrI ACTGG 1 cut(s) 378
BssMI GATC 3 cut(s) 141, 335, 412
Bst4CI ACNGT 5 cut(s) 19, 43, 176, 298, 349
Bst6I CTCTTC 1 cut(s) 63
BstBAI YACGTR 1 cut(s) 275
BstDEI CTNAG 1 cut(s) 378
BstF5I GGATG 3 cut(s) 80, 258, 415
BstKTI GATC 3 cut(s) 144, 338, 415
BstMBI GATC 3 cut(s) 141, 335, 412
BstSLI GKGCMC 1 cut(s) 219
BstV1I GCAGC 2 cut(s) 47, 365
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 335
BstYI RGATCY 1 cut(s) 335
Bsu15I ATCGAT 1 cut(s) 108
BsuRI GGCC 1 cut(s) 390
BsuTUI ATCGAT 1 cut(s) 108
BtsCI GGATG 3 cut(s) 80, 258, 415
CaiI CAGNNNCTG 1 cut(s) 41
Cfr13I GGNCC 2 cut(s) 251, 388
ClaI ATCGAT 1 cut(s) 108
Csp6I GTAC 2 cut(s) 294, 325
CviJI RGCY 8 cut(s) 5, 191, 232, 245, 280, 377, 382, 390
CviKI_1 RGCY 8 cut(s) 5, 191, 232, 245, 280, 377, 382, 390
CviQI GTAC 2 cut(s) 294, 325
DdeI CTNAG 1 cut(s) 378
DpnI GATC 3 cut(s) 143, 337, 414
DpnII GATC 3 cut(s) 141, 335, 412
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
EciI GGCGGA 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 251
FaiI YATR 5 cut(s) 172, 222, 358, 360, 405
FauNDI CATATG 1 cut(s) 358
Fnu4HI GCNGC 2 cut(s) 36, 354
FokI GGATG 2 cut(s) 67, 245
Fsp4HI GCNGC 2 cut(s) 36, 354
GluI GCNGC 2 cut(s) 36, 354
HaeIII GGCC 1 cut(s) 390
HapII CCGG 1 cut(s) 254
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 1 cut(s) 101
HpaII CCGG 1 cut(s) 254
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 340
Hpy188III TCNNGA 3 cut(s) 13, 118, 254
HpyAV CCTTC 1 cut(s) 282
HpyCH4III ACNGT 5 cut(s) 19, 43, 176, 298, 349
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 2 cut(s) 35, 353
HpyF3I CTNAG 1 cut(s) 378
HpySE526I ACGT 1 cut(s) 274
Kpn2I TCCGGA 1 cut(s) 253
Kzo9I GATC 3 cut(s) 141, 335, 412
LpnPI CCDG 4 cut(s) 267, 290, 359, 371
Lsp1109I GCAGC 2 cut(s) 47, 365
LweI GCATC 1 cut(s) 256
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 1 cut(s) 45
MalI GATC 3 cut(s) 143, 337, 414
MboI GATC 3 cut(s) 141, 335, 412
MboII GAAGA 6 cut(s) 50, 69, 81, 84, 133, 142
MflI RGATCY 1 cut(s) 335
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 1 cut(s) 30
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 4 cut(s) 64, 94, 142, 388
MroI TCCGGA 1 cut(s) 253
MslI CAYNNNNRTG 1 cut(s) 408
MspI CCGG 1 cut(s) 254
NdeI CATATG 1 cut(s) 358
NdeII GATC 3 cut(s) 141, 335, 412
NmeAIII GCCGAG 1 cut(s) 124
PkrI GCNGC 2 cut(s) 37, 355
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
Ppu21I YACGTR 1 cut(s) 275
PspPI GGNCC 2 cut(s) 251, 388
PstNI CAGNNNCTG 1 cut(s) 41
PsuI RGATCY 1 cut(s) 335
RsaI GTAC 2 cut(s) 295, 326
RsaNI GTAC 2 cut(s) 294, 325
RseI CAYNNNNRTG 1 cut(s) 408
SatI GCNGC 2 cut(s) 36, 354
Sau3AI GATC 3 cut(s) 141, 335, 412
Sau96I GGNCC 2 cut(s) 251, 388
SchI GAGTC 1 cut(s) 110
SduI GDGCHC 1 cut(s) 219
SetI ASST 8 cut(s) 56, 234, 247, 277, 282, 309, 384, 399
SfaNI GCATC 1 cut(s) 256
SinI GGWCC 1 cut(s) 251
SmiMI CAYNNNNRTG 1 cut(s) 408
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
Sse9I AATT 1 cut(s) 30
SsiI CCGC 1 cut(s) 96
TaaI ACNGT 5 cut(s) 19, 43, 176, 298, 349
TaiI ACGT 1 cut(s) 277
TaqI TCGA 1 cut(s) 108
TasI AATT 1 cut(s) 30
TatI WGTACW 1 cut(s) 324
TseI GCWGC 2 cut(s) 35, 353
TspDTI ATGAA 3 cut(s) 69, 103, 375
VpaK11BI GGWCC 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.