Rroxscaffold_5G00343350

protein disulfide oxidoreductase activity

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
12796686 .. 12798271
1586 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00343350.1

Sequence Viewer

Length: 420 bp
ATGGCTTCATCCAAGACGGTGTTATCGGTAATTGCAGCAACTGTGTTACTCACCTCTCTTCTCTGGAAACTCACATCTTCATCCTCATCTTCTTCCGCCGAGTCTATCGATTTCATCAAGAAGACCATCTCCTCCAACAAGATCGCCATCTTCTCCAAGTCCTATTGCCCATACTGTAGGAGGGCAAAGGCAGTTTTCAAAGAGTTGAAACAAGTGCCCTATGTGGTTGAGCTTGATGAGAGAGCTGATGGCCGGGACATCCAAGATGCTCTAAGTGAGCTTATTGGGAGGCGTACTGTTCCACAGGTGTTTGTAAATGGAAAGTACATTGGGGGATCTGATGATACTGTTGCAGCATATGAAAGTGGAGAACTGGCTAAGCTTCTAGGCCTTGAGGTCAGCCAGAAGGATGATCTGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

139

Amino Acids

15.13

Weight (kDa)

7.69

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 48 - 110 2.1e-18 Glutaredoxin
GST_N_2 PF13409 55 - 117 5.6e-06 Glutathione S-transferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17280 AT5G20500
fragaria_vesca FvH4_4g06520
malus_domestica MD16G1241300.v1.1
prunus_persica Prupe.1G068000_v2.0.a1
pyrus_communis pycom16g20210
rosa_chinensis RchiOBHm_Chr4g0398351
rosa_laevigata RLG00000009363
rosa_multiflora Rmu_sc0004094.1_g000041 Rmu_ssc0000240.1_g000046
rosa_roxburghii Rroxscaffold_5G00343350
rosa_rugosa Rorug04G0007900
rosa_samantha Rh4AG085700 Rh4BG082700 Rh4CG093400 Rh4DG077600
rosa_wichuraiana Rw4G007150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 96
AclWI GGATC 1 cut(s) 343
AcoI YGGCCR 1 cut(s) 250
AfaI GTAC 2 cut(s) 295, 326
AgsI TTSAA 2 cut(s) 199, 208
AluBI AGCT 4 cut(s) 232, 245, 280, 382
AluI AGCT 4 cut(s) 232, 245, 280, 382
AlwI GGATC 1 cut(s) 343
AlwNI CAGNNNCTG 1 cut(s) 41
AoxI GGCC 2 cut(s) 250, 388
ApeKI GCWGC 2 cut(s) 35, 353
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 43
BaeGI GKGCMC 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 128
BbvI GCAGC 2 cut(s) 47, 365
BccI CCATC 3 cut(s) 134, 155, 242
BcnI CCSGG 1 cut(s) 254
BfaI CTAG 1 cut(s) 386
BfmI CTRYAG 1 cut(s) 175
BisI GCNGC 2 cut(s) 36, 354
BlpI GCTNAGC 1 cut(s) 378
BlsI GCNGC 2 cut(s) 37, 355
Bme1390I CCNGG 1 cut(s) 254
BmrFI CCNGG 1 cut(s) 254
BmsI GCATC 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 128
Bpu1102I GCTNAGC 1 cut(s) 378
BpuEI CTTGAG 1 cut(s) 413
BpuMI CCSGG 1 cut(s) 254
Bsa29I ATCGAT 1 cut(s) 108
BsaBI GATNNNNATC 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 378
Bse8I GATNNNNATC 1 cut(s) 146
BseCI ATCGAT 1 cut(s) 108
BseGI GGATG 4 cut(s) 8, 80, 258, 415
BseJI GATNNNNATC 1 cut(s) 146
BseNI ACTGG 1 cut(s) 378
BseRI GAGGAG 1 cut(s) 121
BseSI GKGCMC 1 cut(s) 219
BseXI GCAGC 2 cut(s) 47, 365
BshFI GGCC 2 cut(s) 252, 390
BshVI ATCGAT 1 cut(s) 108
BsiSI CCGG 1 cut(s) 253
BslFI GGGAC 1 cut(s) 269
BsmFI GGGAC 1 cut(s) 269
BsnI GGCC 2 cut(s) 252, 390
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 3 cut(s) 141, 335, 412
Bsp1720I GCTNAGC 1 cut(s) 378
BspACI CCGC 1 cut(s) 96
BspANI GGCC 2 cut(s) 252, 390
BspDI ATCGAT 1 cut(s) 108
BspPI GGATC 1 cut(s) 343
BsrI ACTGG 1 cut(s) 378
BssMI GATC 3 cut(s) 141, 335, 412
Bst4CI ACNGT 5 cut(s) 19, 43, 176, 298, 349
Bst6I CTCTTC 1 cut(s) 63
BstDEI CTNAG 2 cut(s) 272, 378
BstF5I GGATG 4 cut(s) 8, 80, 258, 415
BstKTI GATC 3 cut(s) 144, 338, 415
BstMBI GATC 3 cut(s) 141, 335, 412
BstSCI CCNGG 1 cut(s) 252
BstSFI CTRYAG 1 cut(s) 175
BstSLI GKGCMC 1 cut(s) 219
BstV1I GCAGC 2 cut(s) 47, 365
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 335
BstYI RGATCY 1 cut(s) 335
Bsu15I ATCGAT 1 cut(s) 108
BsuRI GGCC 2 cut(s) 252, 390
BsuTUI ATCGAT 1 cut(s) 108
BtsCI GGATG 4 cut(s) 8, 80, 258, 415
CaiI CAGNNNCTG 1 cut(s) 41
ClaI ATCGAT 1 cut(s) 108
Csp6I GTAC 2 cut(s) 294, 325
CviJI RGCY 9 cut(s) 5, 232, 245, 252, 280, 377, 382, 390, 402
CviKI_1 RGCY 9 cut(s) 5, 232, 245, 252, 280, 377, 382, 390, 402
CviQI GTAC 2 cut(s) 294, 325
DdeI CTNAG 2 cut(s) 272, 378
DpnI GATC 3 cut(s) 143, 337, 414
DpnII GATC 3 cut(s) 141, 335, 412
EaeI YGGCCR 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
EciI GGCGGA 1 cut(s) 85
Eco147I AGGCCT 1 cut(s) 390
FaiI YATR 4 cut(s) 172, 222, 358, 360
FaqI GGGAC 1 cut(s) 269
FauNDI CATATG 1 cut(s) 358
Fnu4HI GCNGC 2 cut(s) 36, 354
FokI GGATG 2 cut(s) 67, 245
Fsp4HI GCNGC 2 cut(s) 36, 354
FspBI CTAG 1 cut(s) 386
GluI GCNGC 2 cut(s) 36, 354
HaeIII GGCC 2 cut(s) 252, 390
HapII CCGG 1 cut(s) 253
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 1 cut(s) 101
HpaII CCGG 1 cut(s) 253
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 340
Hpy188III TCNNGA 2 cut(s) 64, 118
HpyAV CCTTC 1 cut(s) 400
HpyCH4III ACNGT 5 cut(s) 19, 43, 176, 298, 349
HpyCH4V TGCA 2 cut(s) 35, 353
HpyF3I CTNAG 2 cut(s) 272, 378
Kzo9I GATC 3 cut(s) 141, 335, 412
LpnPI CCDG 5 cut(s) 49, 266, 290, 359, 416
Lsp1109I GCAGC 2 cut(s) 47, 365
LweI GCATC 1 cut(s) 256
MaeI CTAG 1 cut(s) 386
MaeIII GTNAC 1 cut(s) 45
MalI GATC 3 cut(s) 143, 337, 414
MboI GATC 3 cut(s) 141, 335, 412
MboII GAAGA 6 cut(s) 50, 69, 81, 84, 133, 142
MflI RGATCY 1 cut(s) 335
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 1 cut(s) 30
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 6 cut(s) 64, 94, 142, 174, 282, 388
MspI CCGG 1 cut(s) 253
MspR9I CCNGG 1 cut(s) 254
NciI CCSGG 1 cut(s) 254
NdeI CATATG 1 cut(s) 358
NdeII GATC 3 cut(s) 141, 335, 412
NmeAIII GCCGAG 1 cut(s) 124
PceI AGGCCT 1 cut(s) 390
PkrI GCNGC 2 cut(s) 37, 355
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PstNI CAGNNNCTG 1 cut(s) 41
PsuI RGATCY 1 cut(s) 335
RsaI GTAC 2 cut(s) 295, 326
RsaNI GTAC 2 cut(s) 294, 325
SatI GCNGC 2 cut(s) 36, 354
Sau3AI GATC 3 cut(s) 141, 335, 412
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 254
SduI GDGCHC 1 cut(s) 219
SetI ASST 7 cut(s) 56, 234, 247, 282, 309, 384, 399
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 1 cut(s) 175
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
Sse9I AATT 1 cut(s) 30
SseBI AGGCCT 1 cut(s) 390
SsiI CCGC 1 cut(s) 96
SspMI CTAG 1 cut(s) 386
StuI AGGCCT 1 cut(s) 390
StyD4I CCNGG 1 cut(s) 252
TaaI ACNGT 5 cut(s) 19, 43, 176, 298, 349
TaqI TCGA 1 cut(s) 108
TasI AATT 1 cut(s) 30
TatI WGTACW 1 cut(s) 324
TseI GCWGC 2 cut(s) 35, 353
TspDTI ATGAA 3 cut(s) 69, 103, 375
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.