FvH4_4g06520

protein disulfide oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013893
Physical Location & Seq
Forward (+)
5798395 .. 5800283
1889 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06520.t1

Sequence Viewer

Length: 420 bp
ATGGCTTCAGCCAAGACGGTGCTATCGGTAATCGCAGCAACAGTGTTACTCACCTCTCTAGTCTGGAAACTCACATCTGCATCCTCCGCTTCTTCCGCCGACTCTGTCGATTTCATTAAGAAGACCATATCCTCCAACAAGATCGCCATCTTCTCCAAGTCCTACTGCCCATACTGTAGAAGGGCAAAGGCGGTTTTCAAAGAGTTGAAACAGGTGCCGTATGTGGTTGAGCTTGATGAGAGAGTTGATGGCAGGGACATCCAAGATGCTTTAAGTGAGATTATTGGGAGGCGTACTGTACCACAGGTGTTTGTAAATGGAAAGTATATTGGAGGATCTGATGATACTGTTGCAGCATATGAAAGTGGAGAACTGGCTAAGCTTCTAGGCCTTGAGGTCAGGCGTAAGGATGATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

140

Amino Acids

15.16

Weight (kDa)

8.87

Isoelectric Point (pI)

31.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 48 - 110 9.2e-18 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17280 AT5G20500
fragaria_vesca FvH4_4g06520
malus_domestica MD16G1241300.v1.1
prunus_persica Prupe.1G068000_v2.0.a1
pyrus_communis pycom16g20210
rosa_chinensis RchiOBHm_Chr4g0398351
rosa_laevigata RLG00000009363
rosa_multiflora Rmu_sc0004094.1_g000041 Rmu_ssc0000240.1_g000046
rosa_roxburghii Rroxscaffold_5G00343350
rosa_rugosa Rorug04G0007900
rosa_samantha Rh4AG085700 Rh4BG082700 Rh4CG093400 Rh4DG077600
rosa_wichuraiana Rw4G007150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 214
AciI CCGC 3 cut(s) 87, 96, 191
AclWI GGATC 1 cut(s) 343
AfaI GTAC 2 cut(s) 295, 300
AgsI TTSAA 2 cut(s) 199, 208
AluBI AGCT 2 cut(s) 232, 382
AluI AGCT 2 cut(s) 232, 382
AlwI GGATC 1 cut(s) 343
AoxI GGCC 1 cut(s) 388
ApeKI GCWGC 2 cut(s) 35, 353
AsuHPI GGTGA 1 cut(s) 43
BanI GGYRCC 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 128
BbvI GCAGC 2 cut(s) 47, 365
BccI CCATC 2 cut(s) 155, 242
BceAI ACGGC 1 cut(s) 202
BfaI CTAG 2 cut(s) 59, 386
BfmI CTRYAG 1 cut(s) 175
BisI GCNGC 2 cut(s) 36, 354
BlpI GCTNAGC 1 cut(s) 378
BlsI GCNGC 2 cut(s) 37, 355
BmiI GGNNCC 1 cut(s) 216
BmsI GCATC 2 cut(s) 89, 256
BpiI GAAGAC 1 cut(s) 128
Bpu1102I GCTNAGC 1 cut(s) 378
BpuEI CTTGAG 1 cut(s) 413
BsaBI GATNNNNATC 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 378
Bse8I GATNNNNATC 1 cut(s) 146
BseGI GGATG 3 cut(s) 80, 258, 415
BseJI GATNNNNATC 1 cut(s) 146
BseNI ACTGG 1 cut(s) 378
BseXI GCAGC 2 cut(s) 47, 365
BshFI GGCC 1 cut(s) 390
BshNI GGYRCC 1 cut(s) 214
BslFI GGGAC 1 cut(s) 269
BsmFI GGGAC 1 cut(s) 269
BsnI GGCC 1 cut(s) 390
Bsp143I GATC 3 cut(s) 141, 335, 412
Bsp1720I GCTNAGC 1 cut(s) 378
BspACI CCGC 3 cut(s) 87, 96, 191
BspANI GGCC 1 cut(s) 390
BspLI GGNNCC 1 cut(s) 216
BspPI GGATC 1 cut(s) 343
BspT107I GGYRCC 1 cut(s) 214
BsrI ACTGG 1 cut(s) 378
BssMI GATC 3 cut(s) 141, 335, 412
Bst4CI ACNGT 5 cut(s) 19, 43, 176, 298, 349
BstDEI CTNAG 1 cut(s) 378
BstF5I GGATG 3 cut(s) 80, 258, 415
BstKTI GATC 3 cut(s) 144, 338, 415
BstMBI GATC 3 cut(s) 141, 335, 412
BstMWI GCNNNNNNNGC 2 cut(s) 86, 95
BstSFI CTRYAG 1 cut(s) 175
BstV1I GCAGC 2 cut(s) 47, 365
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 335
BstYI RGATCY 1 cut(s) 335
BsuRI GGCC 1 cut(s) 390
BtsCI GGATG 3 cut(s) 80, 258, 415
BtsIMutI CAGTG 1 cut(s) 48
Csp6I GTAC 2 cut(s) 294, 299
CviJI RGCY 6 cut(s) 5, 11, 232, 377, 382, 390
CviKI_1 RGCY 6 cut(s) 5, 11, 232, 377, 382, 390
CviQI GTAC 2 cut(s) 294, 299
DdeI CTNAG 1 cut(s) 378
DpnI GATC 3 cut(s) 143, 337, 414
DpnII GATC 3 cut(s) 141, 335, 412
EciI GGCGGA 1 cut(s) 85
Eco147I AGGCCT 1 cut(s) 390
FaiI YATR 6 cut(s) 128, 172, 222, 327, 358, 360
FaqI GGGAC 1 cut(s) 269
FauNDI CATATG 1 cut(s) 358
Fnu4HI GCNGC 2 cut(s) 36, 354
FokI GGATG 2 cut(s) 67, 245
Fsp4HI GCNGC 2 cut(s) 36, 354
FspBI CTAG 2 cut(s) 59, 386
GluI GCNGC 2 cut(s) 36, 354
HaeIII GGCC 1 cut(s) 390
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 1 cut(s) 101
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 340
Hpy188III TCNNGA 1 cut(s) 64
HpyAV CCTTC 1 cut(s) 174
HpyCH4III ACNGT 5 cut(s) 19, 43, 176, 298, 349
HpyCH4V TGCA 2 cut(s) 80, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 95
HpyF3I CTNAG 1 cut(s) 378
Kzo9I GATC 3 cut(s) 141, 335, 412
LpnPI CCDG 6 cut(s) 49, 197, 238, 290, 359, 385
Lsp1109I GCAGC 2 cut(s) 47, 365
LweI GCATC 2 cut(s) 89, 256
MaeI CTAG 2 cut(s) 59, 386
MaeIII GTNAC 1 cut(s) 45
MalI GATC 3 cut(s) 143, 337, 414
MboI GATC 3 cut(s) 141, 335, 412
MboII GAAGA 3 cut(s) 84, 133, 142
MflI RGATCY 1 cut(s) 335
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 6 cut(s) 64, 94, 142, 282, 326, 388
MseI TTAA 2 cut(s) 117, 272
MwoI GCNNNNNNNGC 2 cut(s) 86, 95
NdeI CATATG 1 cut(s) 358
NdeII GATC 3 cut(s) 141, 335, 412
NlaIV GGNNCC 1 cut(s) 216
PceI AGGCCT 1 cut(s) 390
PflFI GACNNNGTC 1 cut(s) 104
PkrI GCNGC 2 cut(s) 37, 355
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 216
PsuI RGATCY 1 cut(s) 335
PsyI GACNNNGTC 1 cut(s) 104
RsaI GTAC 2 cut(s) 295, 300
RsaNI GTAC 2 cut(s) 294, 299
SaqAI TTAA 2 cut(s) 117, 272
SatI GCNGC 2 cut(s) 36, 354
Sau3AI GATC 3 cut(s) 141, 335, 412
SchI GAGTC 1 cut(s) 95
SetI ASST 6 cut(s) 56, 216, 234, 309, 384, 399
SfaNI GCATC 2 cut(s) 89, 256
SfcI CTRYAG 1 cut(s) 175
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
SseBI AGGCCT 1 cut(s) 390
SsiI CCGC 3 cut(s) 87, 96, 191
SspMI CTAG 2 cut(s) 59, 386
StuI AGGCCT 1 cut(s) 390
TaaI ACNGT 5 cut(s) 19, 43, 176, 298, 349
TaqI TCGA 1 cut(s) 108
Tru1I TTAA 2 cut(s) 117, 272
Tru9I TTAA 2 cut(s) 117, 272
TscAI CASTG 1 cut(s) 48
TseI GCWGC 2 cut(s) 35, 353
TspDTI ATGAA 2 cut(s) 103, 375
TspRI CASTG 1 cut(s) 48
Tth111I GACNNNGTC 1 cut(s) 104
XspI CTAG 2 cut(s) 59, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.