AT5G18920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012443
Physical Location & Seq
Forward (+)
6310058 .. 6311136
1079 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G18920.1

Sequence Viewer

Length: 234 bp
ATGGAGAAAGTGACGGAGAATCCCAATTCCGAGACGCAACCTTCTCCTCCTCCTCCGCCGAATCATCAAATGGATGCAGACGACGATGACGAGAATGTGAAACAGCTCAAGGAGTGTTCTTCTCTCTATTTATCTTTACAGGATTGTCTTGTTGATAGTAATAGGGACTGGAAATCTTGCCAAAAACATGTTCAAGCTTTGAAGGAATGTCATGAAAGGAGAATGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
CHCH

Protein Analysis

77

Amino Acids

8.95

Weight (kDa)

5.24

Isoelectric Point (pI)

70.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHCH PF06747 39 - 72 8.3e-07 CHCH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 56
AflIII ACRYGT 1 cut(s) 187
AgsI TTSAA 2 cut(s) 194, 202
AjuI GAANNNNNNNTTGG 2 cut(s) 174, 206
AluBI AGCT 2 cut(s) 106, 197
AluI AGCT 2 cut(s) 106, 197
Alw26I GTCTC 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 26
BmsI GCATC 1 cut(s) 64
BpuEI CTTGAG 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 173
BseGI GGATG 1 cut(s) 79
BseNI ACTGG 1 cut(s) 173
BseRI GAGGAG 3 cut(s) 36, 39, 42
BslFI GGGAC 1 cut(s) 179
BsmAI GTCTC 1 cut(s) 26
BsmBI CGTCTC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 179
BspACI CCGC 1 cut(s) 56
BspHI TCATGA 1 cut(s) 211
BsrI ACTGG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 79
BstMAI GTCTC 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 191
BtsCI GGATG 1 cut(s) 79
CciI TCATGA 1 cut(s) 211
CseI GACGC 1 cut(s) 43
CviAII CATG 2 cut(s) 188, 212
CviJI RGCY 2 cut(s) 106, 197
CviKI_1 RGCY 2 cut(s) 106, 197
EciI GGCGGA 1 cut(s) 45
Esp3I CGTCTC 1 cut(s) 26
FaeI CATG 2 cut(s) 191, 215
FaiI YATR 2 cut(s) 189, 213
FaqI GGGAC 1 cut(s) 179
FatI CATG 2 cut(s) 187, 211
FokI GGATG 1 cut(s) 86
HgaI GACGC 1 cut(s) 43
Hin1II CATG 2 cut(s) 191, 215
HindIII AAGCTT 1 cut(s) 195
HinfI GANTC 2 cut(s) 19, 61
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 1 cut(s) 212
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 2 cut(s) 51, 196
HpyCH4V TGCA 1 cut(s) 77
Hsp92II CATG 2 cut(s) 191, 215
LpnPI CCDG 2 cut(s) 125, 154
LweI GCATC 1 cut(s) 64
MaeIII GTNAC 1 cut(s) 10
MboII GAAGA 1 cut(s) 111
MluCI AATT 1 cut(s) 25
MnlI CCTC 3 cut(s) 57, 60, 63
NlaIII CATG 2 cut(s) 191, 215
NmuCI GTSAC 1 cut(s) 10
NspI RCATGY 1 cut(s) 191
PagI TCATGA 1 cut(s) 211
PciI ACATGT 1 cut(s) 187
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfeI GAWTC 2 cut(s) 19, 61
PscI ACATGT 1 cut(s) 187
SetI ASST 3 cut(s) 43, 108, 199
SfaNI GCATC 1 cut(s) 64
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 1 cut(s) 25
SsiI CCGC 1 cut(s) 56
TasI AATT 1 cut(s) 25
TfiI GAWTC 2 cut(s) 19, 61
TseFI GTSAC 1 cut(s) 10
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 1 cut(s) 228
TspGWI ACGGA 1 cut(s) 29
XceI RCATGY 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.