MD13G1177700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0012443
Physical Location & Seq
Forward (+)
14757315 .. 14758013
699 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1177700.v1.1.491

Sequence Viewer

Length: 234 bp
ATGGACCATTCCCAGTCCCACCCGAATCCAAAACAAAGCAACCCGTCACCGCCGCAACCACCACCTCTCCACGCAGACGTAGAAGGCGACGACGACAATGTAAAACAGCTCAACCAATGCTCTGTTCTCTACCTCTCCTTACAGGATTGCCTTGTTAAGACCGACAGGAATTGGAAATCTTGTCAACCAGAAGTTCAGGCCTTGAAGGCATGCAACGAGAGGAGGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
CHCH

Protein Analysis

78

Amino Acids

8.73

Weight (kDa)

6.8

Isoelectric Point (pI)

74.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 50, 53
AgsI TTSAA 1 cut(s) 205
AjuI GAANNNNNNNTTGG 2 cut(s) 108, 140
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
AoxI GGCC 1 cut(s) 198
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 39
AvaII GGWCC 1 cut(s) 4
BglI GCCNNNNNGGC 1 cut(s) 206
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmrI ACTGGG 1 cut(s) 7
BmuI ACTGGG 1 cut(s) 7
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bse1I ACTGG 1 cut(s) 13
BseNI ACTGG 1 cut(s) 13
BshFI GGCC 1 cut(s) 200
BsnI GGCC 1 cut(s) 200
BspACI CCGC 2 cut(s) 50, 53
BspANI GGCC 1 cut(s) 200
BsrI ACTGG 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 213
BsuRI GGCC 1 cut(s) 200
Cac8I GCNNGC 1 cut(s) 211
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 1 cut(s) 210
CviJI RGCY 2 cut(s) 109, 200
CviKI_1 RGCY 2 cut(s) 109, 200
Eco147I AGGCCT 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 4
FaeI CATG 1 cut(s) 213
FaiI YATR 1 cut(s) 211
FatI CATG 1 cut(s) 209
Fnu4HI GCNGC 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 53
GluI GCNGC 1 cut(s) 53
HaeIII GGCC 1 cut(s) 200
Hin1II CATG 1 cut(s) 213
HincII GTYRAC 1 cut(s) 185
HindII GTYRAC 1 cut(s) 185
HinfI GANTC 1 cut(s) 25
HphI GGTGA 1 cut(s) 39
Hpy166II GTNNAC 1 cut(s) 185
Hpy8I GTNNAC 1 cut(s) 185
Hpy99I CGWCG 2 cut(s) 92, 95
HpyAV CCTTC 2 cut(s) 77, 199
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 1 cut(s) 213
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 1 cut(s) 213
LpnPI CCDG 5 cut(s) 26, 128, 151, 182, 201
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 45
MluCI AATT 1 cut(s) 169
MnlI CCTC 4 cut(s) 75, 143, 213, 216
MseI TTAA 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 206
NlaIII CATG 1 cut(s) 213
NmuCI GTSAC 1 cut(s) 45
NspI RCATGY 1 cut(s) 213
PaeI GCATGC 1 cut(s) 213
PceI AGGCCT 1 cut(s) 200
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 1 cut(s) 53
Sau96I GGNCC 1 cut(s) 4
SetI ASST 4 cut(s) 67, 81, 111, 135
SinI GGWCC 1 cut(s) 4
SphI GCATGC 1 cut(s) 213
Sse9I AATT 1 cut(s) 169
SseBI AGGCCT 1 cut(s) 200
SsiI CCGC 2 cut(s) 50, 53
StuI AGGCCT 1 cut(s) 200
TaiI ACGT 1 cut(s) 81
TaqII GACCGA 1 cut(s) 176
TasI AATT 1 cut(s) 169
TauI GCSGC 1 cut(s) 55
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseFI GTSAC 1 cut(s) 45
Tsp45I GTSAC 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 4
XceI RCATGY 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.