Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009589

Physical Location & Seq

Genomic Coordinates Reverse (-)

6524018 .. 6526735

Gene Structure 2718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G19370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTTTAGAGTGACCGGAACTCTCTCGGCGGCATCATCTCCAGCGGTGGCGGCGGCGTCTTTCTCCGCCGCTCTAAGACTTTCCATAACTCCCACTCTCGCTATCGCCTCTCCTCCCCATCTCCGTTGGTTCTCGAAGTTTTCTCGTCAATTTCTCGGCGGACGCATCTCTTCACTCCGACCACGCATTCCTTCTCCGTGCCCGATTCGACTCTCTGGTTTCCCGGCTCTCAAAATGAGAGCTTCGTTTAGCAGTGGGAGTAGTGGAAGTAGTGCAAGTAGAGAGATTCTGGTGCAGCATTTGCTTGTTAAGAATAATGATGTTGAGCTCTTTGCCGAACTCCAAAAGAAATTCTTGGATGGAGAGGAGATGAGTGATCTTGCGGCTGAGTATTCGATTTGTCCTTCCAAAAAGGACGGTGGTATACTTGGATGGGTAAAACTGGGTCAAATGGTACCAGAGTTTGAGGAAGCTGCGTTTAAAGCAGAGCTGAATCAGGTGGTGAGGTGTAGAACCCAATTTGGCTTGCACTTATTGCAAGTTCTATCTGAGAGAGAACCGGTGAAAGATATCCAGGTAGAGGAGCTGCATTCCAAAATGCAAGATCCAGTTTTCATGGATGAGGCTCAGTTAATTGATGTCAGAGAACCCAATGAGATAGAGATAGCATCCTTGCCAGGATTCAAAGTGTTCCCACTCCGCCAATTTGGAACATGGGCACCAGACATCACTTCAAAGCTGAACCCTGAGAAGGATACATTTGTCTTGTGCAAGGTTGGTGGCAGGTCAATGCAGGTTGCCAACTGGTTACAGTCTCAGGGCTTCAAGAGTGTGTACAACATTACTGGTGGGATACAAGCTTATTCTCTCAAGGTTGACCCATCAATTCCTACTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese Rotamase_3

Protein Analysis

299

Amino Acids

32.98

Weight (kDa)

8.62

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rotamase	PF00639	111 - 181	2.1e-12	PPIC-type PPIASE domain
Rotamase_3	PF13616	112 - 183	3.2e-13	PPIC-type PPIASE domain
Rhodanese	PF00581	194 - 289	4.2e-11	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19370
fragaria_vesca	FvH4_3g27810 FvH4_3g27810
malus_domestica	MD11G1184200.v1.1
prunus_persica	Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1
pyrus_communis	pycom12g08850
rosa_chinensis	RchiOBHm_Chr5g0050451
rosa_laevigata	RLG00000034703
rosa_multiflora	Rmu_sc0003202.1_g000006
rosa_roxburghii	Rroxscaffold_1G00030420
rosa_rugosa	Rorug05G0261100
rosa_samantha	Rh5AG332800 Rh5BG343000 Rh5CG370100 Rh5DG355600
rosa_wichuraiana	Rw5G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	774, 784
Acc65I	GGTACC	1 cut(s)	454
AccB1I	GGYRCC	2 cut(s)	454, 718
AccBSI	CCGCTC	1 cut(s)	71
AccI	GTMKAC	1 cut(s)	424
AciI	CCGC	9 cut(s)	29, 44, 50, 53, 66, 69, 159, 383, 700
AclWI	GGATC	1 cut(s)	599
AcsI	RAATTY	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	2 cut(s)	456, 836
AfiI	CCNNNNNNNGG	2 cut(s)	580, 751
AgeI	ACCGGT	1 cut(s)	559
AgsI	TTSAA	3 cut(s)	685, 735, 826
AjnI	CCWGG	2 cut(s)	573, 676
AluBI	AGCT	7 cut(s)	242, 328, 473, 490, 586, 739, 860
AluI	AGCT	7 cut(s)	242, 328, 473, 490, 586, 739, 860
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	1 cut(s)	819
AlwI	GGATC	1 cut(s)	599
ApeKI	GCWGC	3 cut(s)	295, 473, 586
ApoI	RAATTY	1 cut(s)	350
AsiGI	ACCGGT	1 cut(s)	559
Asp718I	GGTACC	1 cut(s)	454
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	2 cut(s)	514, 574
BaeGI	GKGCMC	2 cut(s)	203, 721
BaeI	ACNNNNGTAYC	4 cut(s)	446, 479, 747, 780
BanI	GGYRCC	2 cut(s)	454, 718
BanII	GRGCYC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	3 cut(s)	307, 460, 573
BccI	CCATC	4 cut(s)	126, 353, 426, 889
BciT130I	CCWGG	2 cut(s)	575, 678
BciVI	GTATCC	2 cut(s)	748, 846
BcnI	CCSGG	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	819
BfuAI	ACCTGC	2 cut(s)	774, 784
BfuI	GTATCC	2 cut(s)	748, 846
BisI	GCNGC	8 cut(s)	30, 51, 54, 69, 296, 384, 474, 587
BlsI	GCNGC	8 cut(s)	31, 52, 55, 70, 297, 385, 475, 588
Bme1390I	CCNGG	3 cut(s)	224, 575, 678
BmiI	GGNNCC	2 cut(s)	456, 720
BmrFI	CCNGG	3 cut(s)	224, 575, 678
BmrI	ACTGGG	1 cut(s)	452
BmsI	GCATC	3 cut(s)	41, 174, 677
BmuI	ACTGGG	1 cut(s)	452
BpmI	CTGGAG	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	854
BpuMI	CCSGG	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	56
BsaWI	WCCGGW	2 cut(s)	14, 559
Bsc4I	CCNNNNNNNGG	2 cut(s)	580, 751
Bse118I	RCCGGY	1 cut(s)	559
Bse1I	ACTGG	4 cut(s)	447, 608, 809, 850
BseBI	CCWGG	2 cut(s)	575, 678
BseGI	GGATG	4 cut(s)	364, 437, 625, 668
BseLI	CCNNNNNNNGG	2 cut(s)	580, 751
BseMII	CTCAG	5 cut(s)	378, 540, 641, 738, 830
BseNI	ACTGG	4 cut(s)	447, 608, 809, 850
BseRI	GAGGAG	3 cut(s)	102, 380, 596
BseSI	GKGCMC	2 cut(s)	203, 721
BseXI	GCAGC	3 cut(s)	307, 460, 573
BsgI	GTGCAG	1 cut(s)	314
BshNI	GGYRCC	2 cut(s)	454, 718
BshTI	ACCGGT	1 cut(s)	559
BsiHKAI	GWGCWC	1 cut(s)	330
BsiSI	CCGG	3 cut(s)	15, 224, 560
BslI	CCNNNNNNNGG	2 cut(s)	580, 751
BsmAI	GTCTC	1 cut(s)	819
BsmI	GAATGC	2 cut(s)	186, 589
Bsp1286I	GDGCHC	3 cut(s)	203, 330, 721
Bsp1407I	TGTACA	1 cut(s)	834
Bsp143I	GATC	2 cut(s)	376, 604
BspACI	CCGC	9 cut(s)	29, 44, 50, 53, 66, 69, 159, 383, 700
BspCNI	CTCAG	5 cut(s)	379, 541, 640, 739, 829
BspLI	GGNNCC	2 cut(s)	456, 720
BspMI	ACCTGC	2 cut(s)	774, 784
BspPI	GGATC	1 cut(s)	599
BspT107I	GGYRCC	2 cut(s)	454, 718
BsrBI	CCGCTC	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	559
BsrGI	TGTACA	1 cut(s)	834
BsrI	ACTGG	4 cut(s)	447, 608, 809, 850
BssAI	RCCGGY	1 cut(s)	559
BssMI	GATC	2 cut(s)	376, 604
BssNAI	GTATAC	1 cut(s)	425
BssNI	GRCGYC	1 cut(s)	56
Bst1107I	GTATAC	1 cut(s)	425
Bst2UI	CCWGG	2 cut(s)	575, 678
Bst4CI	ACNGT	2 cut(s)	419, 813
Bst6I	CTCTTC	1 cut(s)	175
BstACI	GRCGYC	1 cut(s)	56
BstAPI	GCANNNNNTGC	2 cut(s)	301, 535
BstAUI	TGTACA	1 cut(s)	834
BstC8I	GCNNGC	1 cut(s)	527
BstDEI	CTNAG	6 cut(s)	74, 387, 549, 627, 747, 816
BstF5I	GGATG	4 cut(s)	364, 437, 625, 668
BstKTI	GATC	2 cut(s)	379, 607
BstMAI	GTCTC	1 cut(s)	819
BstMBI	GATC	2 cut(s)	376, 604
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 301, 482, 535
BstNI	CCWGG	2 cut(s)	575, 678
BstSCI	CCNGG	3 cut(s)	222, 573, 676
BstSLI	GKGCMC	2 cut(s)	203, 721
BstV1I	GCAGC	3 cut(s)	307, 460, 573
BstX2I	RGATCY	1 cut(s)	604
BstYI	RGATCY	1 cut(s)	604
BstZ17I	GTATAC	1 cut(s)	425
BsuI	GTATCC	2 cut(s)	748, 846
BtsCI	GGATG	4 cut(s)	364, 437, 625, 668
BtsI	GCAGTG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	259
BveI	ACCTGC	2 cut(s)	774, 784
Cac8I	GCNNGC	1 cut(s)	527
Cfr10I	RCCGGY	1 cut(s)	559
CseI	GACGC	2 cut(s)	45, 171
Csp6I	GTAC	2 cut(s)	455, 835
CspAI	ACCGGT	1 cut(s)	559
CspCI	CAANNNNNGTGG	2 cut(s)	760, 795
CviAII	CATG	2 cut(s)	616, 714
CviQI	GTAC	2 cut(s)	455, 835
DdeI	CTNAG	6 cut(s)	74, 387, 549, 627, 747, 816
DpnI	GATC	2 cut(s)	378, 606
DpnII	GATC	2 cut(s)	376, 604
DraI	TTTAAA	1 cut(s)	481
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
EciI	GGCGGA	3 cut(s)	55, 174, 689
Ecl136II	GAGCTC	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	330
Eco32I	GATATC	1 cut(s)	571
Eco53kI	GAGCTC	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	328
EcoRII	CCWGG	2 cut(s)	573, 676
EcoRV	GATATC	1 cut(s)	571
EcoT38I	GRGCYC	1 cut(s)	330
FaeI	CATG	2 cut(s)	619, 717
FaiI	YATR	4 cut(s)	86, 425, 617, 715
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FatI	CATG	2 cut(s)	615, 713
FblI	GTMKAC	1 cut(s)	424
Fnu4HI	GCNGC	8 cut(s)	30, 51, 54, 69, 296, 384, 474, 587
FokI	GGATG	4 cut(s)	371, 444, 632, 655
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	8 cut(s)	30, 51, 54, 69, 296, 384, 474, 587
GluI	GCNGC	8 cut(s)	30, 51, 54, 69, 296, 384, 474, 587
GsuI	CTGGAG	1 cut(s)	24
HapII	CCGG	3 cut(s)	15, 224, 560
HgaI	GACGC	2 cut(s)	45, 171
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	2 cut(s)	619, 717
HincII	GTYRAC	1 cut(s)	877
HindII	GTYRAC	1 cut(s)	877
HindIII	AAGCTT	1 cut(s)	858
HinfI	GANTC	5 cut(s)	205, 210, 286, 493, 681
HpaII	CCGG	3 cut(s)	15, 224, 560
HphI	GGTGA	2 cut(s)	514, 574
Hpy166II	GTNNAC	3 cut(s)	425, 835, 877
Hpy188I	TCNGA	3 cut(s)	179, 550, 644
Hpy188III	TCNNGA	2 cut(s)	133, 826
Hpy8I	GTNNAC	3 cut(s)	425, 835, 877
HpyAV	CCTTC	3 cut(s)	201, 414, 745
HpyCH4III	ACNGT	2 cut(s)	419, 813
HpyCH4V	TGCA	8 cut(s)	275, 295, 529, 538, 589, 601, 771, 793
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 301, 482, 535
HpyF3I	CTNAG	6 cut(s)	74, 387, 549, 627, 747, 816
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	2 cut(s)	619, 717
KpnI	GGTACC	1 cut(s)	458
Kzo9I	GATC	2 cut(s)	376, 604
LmnI	GCTCC	1 cut(s)	583
Lsp1109I	GCAGC	3 cut(s)	307, 460, 573
LweI	GCATC	3 cut(s)	41, 174, 677
MaeIII	GTNAC	2 cut(s)	10, 807
MalI	GATC	2 cut(s)	378, 606
MbiI	CCGCTC	1 cut(s)	71
MboI	GATC	2 cut(s)	376, 604
MboII	GAAGA	1 cut(s)	162
MflI	RGATCY	1 cut(s)	604
MhlI	GDGCHC	3 cut(s)	203, 330, 721
MluCI	AATT	6 cut(s)	149, 350, 518, 633, 704, 885
MlyI	GAGTC	1 cut(s)	204
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	7 cut(s)	118, 123, 358, 460, 498, 574, 616
MseI	TTAA	3 cut(s)	309, 480, 632
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	3 cut(s)	15, 224, 560
MspR9I	CCNGG	3 cut(s)	224, 575, 678
Mva1269I	GAATGC	2 cut(s)	186, 589
MvaI	CCWGG	2 cut(s)	575, 678
MwoI	GCNNNNNNNGC	4 cut(s)	50, 301, 482, 535
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	2 cut(s)	376, 604
NlaIII	CATG	2 cut(s)	619, 717
NlaIV	GGNNCC	2 cut(s)	456, 720
NmeAIII	GCCGAG	2 cut(s)	5, 135
NmuCI	GTSAC	1 cut(s)	10
PctI	GAATGC	2 cut(s)	186, 589
PfeI	GAWTC	4 cut(s)	205, 286, 493, 681
PinAI	ACCGGT	1 cut(s)	559
PkrI	GCNGC	8 cut(s)	31, 52, 55, 70, 297, 385, 475, 588
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	330
Psp6I	CCWGG	2 cut(s)	573, 676
PspGI	CCWGG	2 cut(s)	573, 676
PspN4I	GGNNCC	2 cut(s)	456, 720
PsuI	RGATCY	1 cut(s)	604
RsaI	GTAC	2 cut(s)	456, 836
RsaNI	GTAC	2 cut(s)	455, 835
SacI	GAGCTC	1 cut(s)	330
SaqAI	TTAA	3 cut(s)	309, 480, 632
SatI	GCNGC	8 cut(s)	30, 51, 54, 69, 296, 384, 474, 587
Sau3AI	GATC	2 cut(s)	376, 604
SchI	GAGTC	1 cut(s)	204
ScrFI	CCNGG	3 cut(s)	224, 575, 678
SduI	GDGCHC	3 cut(s)	203, 330, 721
SfaNI	GCATC	3 cut(s)	41, 174, 677
SmlI	CTYRAG	1 cut(s)	869
SmoI	CTYRAG	1 cut(s)	869
Sse9I	AATT	6 cut(s)	149, 350, 518, 633, 704, 885
SsiI	CCGC	9 cut(s)	29, 44, 50, 53, 66, 69, 159, 383, 700
SstI	GAGCTC	1 cut(s)	330
StyD4I	CCNGG	3 cut(s)	222, 573, 676
TaaI	ACNGT	2 cut(s)	419, 813
TaqI	TCGA	3 cut(s)	134, 208, 395
TasI	AATT	6 cut(s)	149, 350, 518, 633, 704, 885
TatI	WGTACW	1 cut(s)	834
TauI	GCSGC	5 cut(s)	32, 53, 56, 71, 386
TfiI	GAWTC	4 cut(s)	205, 286, 493, 681
Tru1I	TTAA	3 cut(s)	309, 480, 632
Tru9I	TTAA	3 cut(s)	309, 480, 632
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	3 cut(s)	295, 473, 586
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	604
TspGWI	ACGGA	2 cut(s)	113, 186
TspRI	CASTG	1 cut(s)	259
XapI	RAATTY	1 cut(s)	350
XmiI	GTMKAC	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.