Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009589

Physical Location & Seq

Genomic Coordinates Reverse (-)

29521808 .. 29522800

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0261100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGTTGTCAATCACTCCAGTGACATGACATCAATCCGGTCAGGAAAACTTCAATTCCTTCTTGCACTAAGACTGTATCTCTTGCATTTCAAAAAAAAAAAAAAAAAAAATAGACTGTATCTCTTGATCTTTCTCTTCTGCCCTTCTGCAACTCTACTAAGCTTTACTTTCCCGAATTTTAATCAAGATGATATTGTCAATATAACGCGAGAAGGAGACGCTTATATTGACAAGGAATTTCTCCACCTCACCAATAGCTCACAAGACCAGCGACCGGGTGGAATTGGTCGAGCCACGTACTACCAGCCCTTCCTGCTCCGAGAAAATACCACTGGAAAACTCGCCGATTTCACCACAAATTTTACATTCTCCATTTATGCGCCAAATTATGCCAATTTAACATGGGGTGCCGGTGATGGACTAGCCTTCTTCTTAGCGCCAGACAGGTCCGAACTCAACAACTCAGATGGCTTTGCTCTTGGCCTCCCCTTGTATCATCAGTACCCATTTGTGGCGGTGGAATTTGATATCTTCAAGAACTACGAAGCCATCCCCAACACAAATGAAACCGTCGACGACCCATCCGAAGATCATGTGGGTATCGACGTCAACTCTGTCAAGTCGCGGATTGCCGTCCCTTGGAATGGTAGTATTGTCAATGGACAAAACAATGATGTCCGGATCAGTTACAGTTCTAGCACAAAAAATCTTAGCATTGCCTTCACAACTTTTTTAATGAATGGTACCAAAAAGATGAGCTATTTTTCTTACACAGTTGATCTGAACAATGTCTTACCGGATTGGGTCATTGTTGGGTTCTCGGCTTCAACAGGTGAAGCTGCTTATGCTATATTTAAGATCGTCTCGTGGAGTTTTACTTCAACTCCTCTGGTTGATGAGAATGCCAGGGACAACACTCCGGTAAGTGTACTTTCTGCTCCTACGCCTAGCCCTATGGCTAGTTCTAGTCCCACCTCCAGGCTCCAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese Rotamase_3

Protein Analysis

330

Amino Acids

36.83

Weight (kDa)

5.96

Isoelectric Point (pI)

29.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	53 - 303	6.4e-60	Legume lectin domain
Lectin_L-type_dom	PF18483	72 - 280	7.2e-11	Legume lectin beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19370
fragaria_vesca	FvH4_3g27810 FvH4_3g27810
malus_domestica	MD11G1184200.v1.1
prunus_persica	Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1
pyrus_communis	pycom12g08850
rosa_chinensis	RchiOBHm_Chr5g0050451
rosa_laevigata	RLG00000034703
rosa_multiflora	Rmu_sc0003202.1_g000006
rosa_roxburghii	Rroxscaffold_1G00030420
rosa_rugosa	Rorug05G0261100
rosa_samantha	Rh5AG332800 Rh5BG343000 Rh5CG370100 Rh5DG355600
rosa_wichuraiana	Rw5G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	609
Acc65I	GGTACC	1 cut(s)	743
AccB1I	GGYRCC	2 cut(s)	407, 743
AccI	GTMKAC	1 cut(s)	573
AccII	CGCG	2 cut(s)	208, 625
AccIII	TCCGGA	1 cut(s)	678
AciI	CCGC	2 cut(s)	515, 625
AclWI	GGATC	1 cut(s)	689
AcsI	RAATTY	4 cut(s)	175, 236, 358, 521
AcyI	GRCGYC	1 cut(s)	606
AfaI	GTAC	4 cut(s)	299, 503, 745, 930
AfiI	CCNNNNNNNGG	5 cut(s)	274, 511, 639, 644, 978
AgsI	TTSAA	5 cut(s)	53, 91, 535, 828, 882
AjnI	CCWGG	2 cut(s)	905, 977
AleI	CACNNNNGTG	1 cut(s)	18
AluBI	AGCT	4 cut(s)	162, 258, 759, 839
AluI	AGCT	4 cut(s)	162, 258, 759, 839
Alw26I	GTCTC	2 cut(s)	210, 868
AlwI	GGATC	1 cut(s)	689
Aor13HI	TCCGGA	1 cut(s)	678
AoxI	GGCC	1 cut(s)	481
ApeKI	GCWGC	1 cut(s)	839
ApoI	RAATTY	4 cut(s)	175, 236, 358, 521
Asp718I	GGTACC	1 cut(s)	743
AspLEI	GCGC	2 cut(s)	382, 439
AspS9I	GGNCC	1 cut(s)	447
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	4 cut(s)	241, 343, 425, 845
AvaII	GGWCC	1 cut(s)	447
BanI	GGYRCC	2 cut(s)	407, 743
BauI	CACGAG	1 cut(s)	865
BbvI	GCAGC	1 cut(s)	826
BccI	CCATC	4 cut(s)	410, 461, 557, 589
BceAI	ACGGC	1 cut(s)	617
BciT130I	CCWGG	2 cut(s)	907, 979
BcnI	CCSGG	1 cut(s)	276
BcoDI	GTCTC	2 cut(s)	210, 868
BfaI	CTAG	5 cut(s)	422, 696, 948, 960, 966
BfoI	RGCGCY	1 cut(s)	440
BisI	GCNGC	1 cut(s)	840
BlsI	GCNGC	1 cut(s)	841
Bme1390I	CCNGG	3 cut(s)	276, 907, 979
Bme18I	GGWCC	1 cut(s)	447
BmgT120I	GGNCC	1 cut(s)	447
BmiI	GGNNCC	3 cut(s)	409, 745, 983
BmrFI	CCNGG	3 cut(s)	276, 907, 979
BpmI	CTGGAG	2 cut(s)	961, 968
BpuMI	CCSGG	1 cut(s)	276
BsaAI	YACGTR	1 cut(s)	297
BsaHI	GRCGYC	1 cut(s)	606
BsaJI	CCNNGG	2 cut(s)	638, 906
BsaWI	WCCGGW	4 cut(s)	36, 678, 796, 919
BsaXI	ACNNNNNCTCC	2 cut(s)	868, 898
Bsc4I	CCNNNNNNNGG	5 cut(s)	274, 511, 639, 644, 978
Bse118I	RCCGGY	1 cut(s)	410
Bse1I	ACTGG	2 cut(s)	18, 337
Bse3DI	GCAATG	1 cut(s)	714
BseAI	TCCGGA	1 cut(s)	678
BseBI	CCWGG	2 cut(s)	907, 979
BseDI	CCNNGG	2 cut(s)	638, 906
BseGI	GGATG	2 cut(s)	549, 581
BseLI	CCNNNNNNNGG	5 cut(s)	274, 511, 639, 644, 978
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	2 cut(s)	18, 337
BseRI	GAGGAG	1 cut(s)	876
BseXI	GCAGC	1 cut(s)	826
Bsh1236I	CGCG	2 cut(s)	208, 625
Bsh1285I	CGRYCG	1 cut(s)	275
BshFI	GGCC	1 cut(s)	483
BshNI	GGYRCC	2 cut(s)	407, 743
BsiEI	CGRYCG	1 cut(s)	275
BsiSI	CCGG	6 cut(s)	37, 275, 411, 679, 797, 920
BslFI	GGGAC	3 cut(s)	620, 923, 954
BslI	CCNNNNNNNGG	5 cut(s)	274, 511, 639, 644, 978
BsmAI	GTCTC	2 cut(s)	210, 868
BsmBI	CGTCTC	2 cut(s)	210, 868
BsmFI	GGGAC	3 cut(s)	620, 923, 954
BsmI	GAATGC	1 cut(s)	907
BsnI	GGCC	1 cut(s)	483
Bsp13I	TCCGGA	1 cut(s)	678
Bsp143I	GATC	5 cut(s)	126, 589, 681, 778, 858
BspACI	CCGC	2 cut(s)	515, 625
BspANI	GGCC	1 cut(s)	483
BspCNI	CTCAG	1 cut(s)	476
BspEI	TCCGGA	1 cut(s)	678
BspFNI	CGCG	2 cut(s)	208, 625
BspLI	GGNNCC	3 cut(s)	409, 745, 983
BspPI	GGATC	1 cut(s)	689
BspT107I	GGYRCC	2 cut(s)	407, 743
BsrDI	GCAATG	1 cut(s)	714
BsrFI	RCCGGY	1 cut(s)	410
BsrI	ACTGG	2 cut(s)	18, 337
BssAI	RCCGGY	1 cut(s)	410
BssECI	CCNNGG	2 cut(s)	638, 906
BssMI	GATC	5 cut(s)	126, 589, 681, 778, 858
BssNI	GRCGYC	1 cut(s)	606
BssSI	CACGAG	1 cut(s)	865
BssT1I	CCWWGG	1 cut(s)	638
Bst2BI	CACGAG	1 cut(s)	865
Bst2UI	CCWGG	2 cut(s)	907, 979
Bst4CI	ACNGT	5 cut(s)	75, 117, 571, 692, 775
Bst6I	CTCTTC	1 cut(s)	140
BstACI	GRCGYC	1 cut(s)	606
BstBAI	YACGTR	1 cut(s)	297
BstDEI	CTNAG	5 cut(s)	68, 158, 433, 463, 710
BstF5I	GGATG	2 cut(s)	549, 581
BstFNI	CGCG	2 cut(s)	208, 625
BstH2I	RGCGCY	1 cut(s)	440
BstHHI	GCGC	2 cut(s)	382, 439
BstKTI	GATC	5 cut(s)	129, 592, 684, 781, 861
BstMAI	GTCTC	2 cut(s)	210, 868
BstMBI	GATC	5 cut(s)	126, 589, 681, 778, 858
BstMCI	CGRYCG	1 cut(s)	275
BstMWI	GCNNNNNNNGC	2 cut(s)	313, 845
BstNI	CCWGG	2 cut(s)	907, 979
BstSCI	CCNGG	3 cut(s)	274, 905, 977
BstUI	CGCG	2 cut(s)	208, 625
BstV1I	GCAGC	1 cut(s)	826
BsuRI	GGCC	1 cut(s)	483
BtsCI	GGATG	2 cut(s)	549, 581
BtsIMutI	CAGTG	2 cut(s)	25, 330
CfoI	GCGC	2 cut(s)	382, 439
Cfr10I	RCCGGY	1 cut(s)	410
Cfr13I	GGNCC	1 cut(s)	447
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	4 cut(s)	298, 502, 744, 929
CviAII	CATG	3 cut(s)	25, 402, 593
CviQI	GTAC	4 cut(s)	298, 502, 744, 929
DdeI	CTNAG	5 cut(s)	68, 158, 433, 463, 710
DpnI	GATC	5 cut(s)	128, 591, 683, 780, 860
DpnII	GATC	5 cut(s)	126, 589, 681, 778, 858
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Eco130I	CCWWGG	1 cut(s)	638
Eco32I	GATATC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	447
EcoRII	CCWGG	2 cut(s)	905, 977
EcoRV	GATATC	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	638
ErhI	CCWWGG	1 cut(s)	638
Esp3I	CGTCTC	2 cut(s)	210, 868
FaeI	CATG	3 cut(s)	28, 405, 596
FalI	AAGNNNNNCTT	2 cut(s)	151, 183
FaqI	GGGAC	3 cut(s)	620, 923, 954
FatI	CATG	3 cut(s)	24, 401, 592
FblI	GTMKAC	1 cut(s)	573
Fnu4HI	GCNGC	1 cut(s)	840
FokI	GGATG	2 cut(s)	536, 568
Fsp4HI	GCNGC	1 cut(s)	840
FspBI	CTAG	5 cut(s)	422, 696, 948, 960, 966
GlaI	GCGC	2 cut(s)	381, 438
GluI	GCNGC	1 cut(s)	840
GsuI	CTGGAG	2 cut(s)	961, 968
HaeII	RGCGCY	1 cut(s)	440
HaeIII	GGCC	1 cut(s)	483
HapII	CCGG	6 cut(s)	37, 275, 411, 679, 797, 920
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	2 cut(s)	382, 439
Hin1I	GRCGYC	1 cut(s)	606
Hin1II	CATG	3 cut(s)	28, 405, 596
Hin6I	GCGC	2 cut(s)	380, 437
HinP1I	GCGC	2 cut(s)	380, 437
HincII	GTYRAC	2 cut(s)	574, 610
HindII	GTYRAC	2 cut(s)	574, 610
HindIII	AAGCTT	1 cut(s)	160
HpaII	CCGG	6 cut(s)	37, 275, 411, 679, 797, 920
HphI	GGTGA	4 cut(s)	241, 343, 425, 845
Hpy166II	GTNNAC	3 cut(s)	574, 610, 929
Hpy188I	TCNGA	5 cut(s)	320, 451, 466, 586, 783
Hpy188III	TCNNGA	6 cut(s)	42, 124, 172, 185, 535, 679
Hpy8I	GTNNAC	3 cut(s)	574, 610, 929
Hpy99I	CGWCG	3 cut(s)	575, 578, 608
HpyAV	CCTTC	6 cut(s)	68, 153, 206, 319, 436, 730
HpyCH4III	ACNGT	5 cut(s)	75, 117, 571, 692, 775
HpyCH4IV	ACGT	2 cut(s)	296, 606
HpyCH4V	TGCA	3 cut(s)	65, 85, 149
HpyF10VI	GCNNNNNNNGC	2 cut(s)	313, 845
HpyF3I	CTNAG	5 cut(s)	68, 158, 433, 463, 710
HpySE526I	ACGT	2 cut(s)	296, 606
Hsp92I	GRCGYC	1 cut(s)	606
Hsp92II	CATG	3 cut(s)	28, 405, 596
HspAI	GCGC	2 cut(s)	380, 437
Kpn2I	TCCGGA	1 cut(s)	678
KpnI	GGTACC	1 cut(s)	747
Kzo9I	GATC	5 cut(s)	126, 589, 681, 778, 858
LmnI	GCTCC	3 cut(s)	321, 943, 987
Lsp1109I	GCAGC	1 cut(s)	826
MaeI	CTAG	5 cut(s)	422, 696, 948, 960, 966
MaeII	ACGT	2 cut(s)	296, 606
MaeIII	GTNAC	2 cut(s)	20, 686
MalI	GATC	5 cut(s)	128, 591, 683, 780, 860
MboI	GATC	5 cut(s)	126, 589, 681, 778, 858
MboII	GAAGA	4 cut(s)	127, 421, 523, 599
MluCI	AATT	8 cut(s)	53, 175, 236, 282, 358, 385, 394, 521
MnlI	CCTC	4 cut(s)	257, 494, 897, 985
MroI	TCCGGA	1 cut(s)	678
MseI	TTAA	4 cut(s)	180, 398, 734, 855
MslI	CAYNNNNRTG	1 cut(s)	18
MspI	CCGG	6 cut(s)	37, 275, 411, 679, 797, 920
MspR9I	CCNGG	3 cut(s)	276, 907, 979
Mva1269I	GAATGC	1 cut(s)	907
MvaI	CCWGG	2 cut(s)	907, 979
MvnI	CGCG	2 cut(s)	208, 625
MwoI	GCNNNNNNNGC	2 cut(s)	313, 845
NciI	CCSGG	1 cut(s)	276
NdeII	GATC	5 cut(s)	126, 589, 681, 778, 858
NlaIII	CATG	3 cut(s)	28, 405, 596
NlaIV	GGNNCC	3 cut(s)	409, 745, 983
NmeAIII	GCCGAG	1 cut(s)	800
NmuCI	GTSAC	1 cut(s)	20
OliI	CACNNNNGTG	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	1 cut(s)	582
PctI	GAATGC	1 cut(s)	907
PkrI	GCNGC	1 cut(s)	841
Ppu21I	YACGTR	1 cut(s)	297
Psp6I	CCWGG	2 cut(s)	905, 977
PspGI	CCWGG	2 cut(s)	905, 977
PspN4I	GGNNCC	3 cut(s)	409, 745, 983
PspPI	GGNCC	1 cut(s)	447
RsaI	GTAC	4 cut(s)	299, 503, 745, 930
RsaNI	GTAC	4 cut(s)	298, 502, 744, 929
RseI	CAYNNNNRTG	1 cut(s)	18
SalI	GTCGAC	1 cut(s)	572
SaqAI	TTAA	4 cut(s)	180, 398, 734, 855
SatI	GCNGC	1 cut(s)	840
Sau3AI	GATC	5 cut(s)	126, 589, 681, 778, 858
Sau96I	GGNCC	1 cut(s)	447
ScrFI	CCNGG	3 cut(s)	276, 907, 979
SgrDI	CGTCGACG	1 cut(s)	572
SinI	GGWCC	1 cut(s)	447
SmiMI	CAYNNNNRTG	1 cut(s)	18
Sse9I	AATT	8 cut(s)	53, 175, 236, 282, 358, 385, 394, 521
SsiI	CCGC	2 cut(s)	515, 625
SspMI	CTAG	5 cut(s)	422, 696, 948, 960, 966
StyD4I	CCNGG	3 cut(s)	274, 905, 977
StyI	CCWWGG	1 cut(s)	638
TaaI	ACNGT	5 cut(s)	75, 117, 571, 692, 775
TaiI	ACGT	2 cut(s)	299, 609
TaqI	TCGA	3 cut(s)	289, 573, 603
TasI	AATT	8 cut(s)	53, 175, 236, 282, 358, 385, 394, 521
TatI	WGTACW	1 cut(s)	928
Tru1I	TTAA	4 cut(s)	180, 398, 734, 855
Tru9I	TTAA	4 cut(s)	180, 398, 734, 855
TscAI	CASTG	2 cut(s)	25, 337
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	1 cut(s)	839
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	2 cut(s)	579, 752
TspRI	CASTG	2 cut(s)	25, 337
VpaK11BI	GGWCC	1 cut(s)	447
XapI	RAATTY	4 cut(s)	175, 236, 358, 521
XcmI	CCANNNNNNNNNTGG	1 cut(s)	275
XmiI	GTMKAC	1 cut(s)	573
XspI	CTAG	5 cut(s)	422, 696, 948, 960, 966
ZraI	GACGTC	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.