Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009589

Physical Location & Seq

Genomic Coordinates Reverse (-)

19393134 .. 19400888

Gene Structure 7755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G263800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTTAAGAGTTTCTCATCTGACACCAATAGCGCCTCCAGCTCTCAGTGCTCTTAGACTATCTCTGAGCCCCACTCTCAACCTCCTTTCTCCTTCCAACGTTCACAAAGTCTCTACTTTTGCACATTCTCAGACTTCTCTCTCCCTAATCTTCAGACCCAGTTCCCTACATTCCCCTTCTTTGAGCGTGAAGTGGGTTCTGCAGCGTATGGTTGGCAATCCATGTCCCAAGGGTACAGCTTCGTTTAGTGCTGAAAGTAGCTCTGGAGATGGAAGGGAAATATTGGTGCAGCACTTGCTTGTTAAAGAAGACAACCTTAAGCTTCTTGTAGATCTTCAGCAGAGAGTTTCAGGAGGTGAAGACCTCAGTGATCTTGCTGCAGAATACTCGATATGTCCATCCAAACAAGAGGGGGGAATGCTTGGCTGGGTGAGGAAGGGGCAAATGGTACCTGAGTTCGAGGAGGCTGCATTTAATGCATCTTTGAATAAAGTTGTAAGGTGCAAAACAAAATTTGGGTGGCATTTACTGCAAGTACTGTCAGAGAGGGAAGAATCAGTACTCCAAGACATTCAACCTGAGGAGCTTCATGTGAAAATGCAAGATCCCAGTTTCCTAGATGAGGCCCAGTTGATTGATGTTCGAGAACCCGAAGAAGTACATGTATCACCTTTGTTTCACAGGGCGCAAGCTTCTTTGCTGGGTTTCCAGGTTCTTCCCCTTCGAAAATTTGGAAGCTGGGGACCTGAAATAACAACGAAGTTTAATCCTCAAAAGGATACTTATGTTATGTGTCACCATGGCGTGCGATCATTACAAGTTGCCAAGTGGTTGCAGACCCAGGGGTTTAAGAGAGTATTCAATGTTTCTGGTGGAATTCATGATTATGCTCAAAGGGTTGATCCAACAATTCCAACTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese Rotamase_3

Protein Analysis

308

Amino Acids

34.24

Weight (kDa)

7.21

Isoelectric Point (pI)

53.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19370
fragaria_vesca	FvH4_3g27810 FvH4_3g27810
malus_domestica	MD11G1184200.v1.1
prunus_persica	Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1
pyrus_communis	pycom12g08850
rosa_chinensis	RchiOBHm_Chr5g0050451
rosa_laevigata	RLG00000034703
rosa_multiflora	Rmu_sc0003202.1_g000006
rosa_roxburghii	Rroxscaffold_1G00030420
rosa_rugosa	Rorug05G0261100
rosa_samantha	Rh5AG332800 Rh5BG343000 Rh5CG370100 Rh5DG355600
rosa_wichuraiana	Rw5G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	448
AccB1I	GGYRCC	1 cut(s)	448
AclI	AACGTT	1 cut(s)	99
AclWI	GGATC	2 cut(s)	599, 896
AcsI	RAATTY	3 cut(s)	512, 728, 876
AcuI	CTGAAG	2 cut(s)	136, 320
AfaI	GTAC	5 cut(s)	235, 450, 537, 561, 660
AfiI	CCNNNNNNNGG	1 cut(s)	622
AflII	CTTAAG	1 cut(s)	317
AflIII	ACRYGT	1 cut(s)	661
AgsI	TTSAA	3 cut(s)	487, 575, 862
AjnI	CCWGG	2 cut(s)	708, 840
AluBI	AGCT	7 cut(s)	41, 239, 261, 322, 586, 692, 738
AluI	AGCT	7 cut(s)	41, 239, 261, 322, 586, 692, 738
Alw21I	GWGCWC	1 cut(s)	52
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	2 cut(s)	599, 896
AoxI	GGCC	1 cut(s)	624
ApeKI	GCWGC	4 cut(s)	202, 289, 377, 467
ApoI	RAATTY	3 cut(s)	512, 728, 876
Asp718I	GGTACC	1 cut(s)	448
AspLEI	GCGC	2 cut(s)	34, 688
AspS9I	GGNCC	2 cut(s)	625, 743
AsuHPI	GGTGA	4 cut(s)	368, 442, 660, 788
AsuII	TTCGAA	1 cut(s)	724
AvaII	GGWCC	1 cut(s)	743
AxyI	CCTNAGG	1 cut(s)	579
BaeI	ACNNNNGTAYC	4 cut(s)	440, 473, 771, 804
BanI	GGYRCC	1 cut(s)	448
BanII	GRGCYC	1 cut(s)	71
BarI	GAAGNNNNNNTAC	2 cut(s)	543, 575
BbsI	GAAGAC	2 cut(s)	315, 366
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	4 cut(s)	214, 301, 364, 454
BccI	CCATC	2 cut(s)	263, 406
BcgI	CGANNNNNNTGC	4 cut(s)	369, 403, 449, 483
BciT130I	CCWGG	2 cut(s)	710, 842
BciVI	GTATCC	1 cut(s)	772
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	1 cut(s)	617
BfmI	CTRYAG	2 cut(s)	200, 378
BfoI	RGCGCY	1 cut(s)	35
BfrI	CTTAAG	1 cut(s)	317
BfuI	GTATCC	1 cut(s)	772
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	4 cut(s)	203, 290, 378, 468
BlsI	GCNGC	4 cut(s)	204, 291, 379, 469
BmcAI	AGTACT	2 cut(s)	537, 561
Bme1390I	CCNGG	2 cut(s)	710, 842
Bme18I	GGWCC	1 cut(s)	743
BmgT120I	GGNCC	2 cut(s)	625, 743
BmiI	GGNNCC	2 cut(s)	450, 744
BmrFI	CCNGG	2 cut(s)	710, 842
BmrI	ACTGGG	3 cut(s)	153, 603, 622
BmsI	GCATC	1 cut(s)	488
BmuI	ACTGGG	3 cut(s)	153, 603, 622
BpiI	GAAGAC	2 cut(s)	315, 366
BplI	GAGNNNNNCTC	2 cut(s)	58, 90
BpmI	CTGGAG	2 cut(s)	21, 285
Bpu14I	TTCGAA	1 cut(s)	724
BsaJI	CCNNGG	4 cut(s)	228, 799, 840, 841
Bsc4I	CCNNNNNNNGG	1 cut(s)	622
Bse1I	ACTGG	3 cut(s)	159, 609, 628
Bse21I	CCTNAGG	1 cut(s)	579
BseBI	CCWGG	2 cut(s)	710, 842
BseDI	CCNNGG	4 cut(s)	228, 799, 840, 841
BseGI	GGATG	1 cut(s)	398
BseLI	CCNNNNNNNGG	1 cut(s)	622
BseMII	CTCAG	6 cut(s)	56, 58, 143, 379, 444, 570
BseNI	ACTGG	3 cut(s)	159, 609, 628
BseRI	GAGGAG	2 cut(s)	476, 596
BseXI	GCAGC	4 cut(s)	214, 301, 364, 454
BseYI	CCCAGC	3 cut(s)	426, 700, 738
BsgI	GTGCAG	1 cut(s)	308
BshFI	GGCC	1 cut(s)	626
BshNI	GGYRCC	1 cut(s)	448
BsiHKAI	GWGCWC	1 cut(s)	52
BslFI	GGGAC	2 cut(s)	210, 756
BslI	CCNNNNNNNGG	1 cut(s)	622
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	2 cut(s)	210, 756
BsmI	GAATGC	1 cut(s)	423
BsnI	GGCC	1 cut(s)	626
Bsp119I	TTCGAA	1 cut(s)	724
Bsp1286I	GDGCHC	2 cut(s)	52, 71
Bsp143I	GATC	5 cut(s)	331, 370, 604, 809, 901
Bsp19I	CCATGG	1 cut(s)	799
BspANI	GGCC	1 cut(s)	626
BspCNI	CTCAG	6 cut(s)	57, 57, 142, 378, 445, 571
BspHI	TCATGA	1 cut(s)	880
BspLI	GGNNCC	2 cut(s)	450, 744
BspMAI	CTGCAG	2 cut(s)	204, 382
BspPI	GGATC	2 cut(s)	599, 896
BspT104I	TTCGAA	1 cut(s)	724
BspT107I	GGYRCC	1 cut(s)	448
BspTI	CTTAAG	1 cut(s)	317
BsrI	ACTGG	3 cut(s)	159, 609, 628
BssECI	CCNNGG	4 cut(s)	228, 799, 840, 841
BssMI	GATC	5 cut(s)	331, 370, 604, 809, 901
BssT1I	CCWWGG	2 cut(s)	228, 799
Bst2UI	CCWGG	2 cut(s)	710, 842
Bst4CI	ACNGT	1 cut(s)	540
BstAFI	CTTAAG	1 cut(s)	317
BstAPI	GCANNNNNTGC	3 cut(s)	295, 476, 529
BstBI	TTCGAA	1 cut(s)	724
BstC8I	GCNNGC	2 cut(s)	690, 806
BstDEI	CTNAG	7 cut(s)	44, 53, 65, 129, 365, 453, 579
BstDSI	CCRYGG	1 cut(s)	799
BstENI	CCTNNNNNAGG	1 cut(s)	620
BstF5I	GGATG	1 cut(s)	398
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	2 cut(s)	34, 688
BstKTI	GATC	5 cut(s)	334, 373, 607, 812, 904
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	5 cut(s)	331, 370, 604, 809, 901
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 47, 295, 476, 529
BstNI	CCWGG	2 cut(s)	710, 842
BstNSI	RCATGY	1 cut(s)	665
BstSCI	CCNGG	2 cut(s)	708, 840
BstSFI	CTRYAG	2 cut(s)	200, 378
BstV1I	GCAGC	4 cut(s)	214, 301, 364, 454
BstV2I	GAAGAC	2 cut(s)	315, 366
BstX2I	RGATCY	2 cut(s)	331, 604
BstYI	RGATCY	2 cut(s)	331, 604
Bsu36I	CCTNAGG	1 cut(s)	579
BsuI	GTATCC	1 cut(s)	772
BsuRI	GGCC	1 cut(s)	626
BtgI	CCRYGG	1 cut(s)	799
BtsCI	GGATG	1 cut(s)	398
BtsIMutI	CAGTG	2 cut(s)	52, 373
Cac8I	GCNNGC	2 cut(s)	690, 806
CciI	TCATGA	1 cut(s)	880
CfoI	GCGC	2 cut(s)	34, 688
Cfr13I	GGNCC	2 cut(s)	625, 743
Csp6I	GTAC	5 cut(s)	234, 449, 536, 560, 659
CviAII	CATG	5 cut(s)	222, 590, 662, 800, 881
CviQI	GTAC	5 cut(s)	234, 449, 536, 560, 659
DdeI	CTNAG	7 cut(s)	44, 53, 65, 129, 365, 453, 579
DpnI	GATC	5 cut(s)	333, 372, 606, 811, 903
DpnII	GATC	5 cut(s)	331, 370, 604, 809, 901
Eco130I	CCWWGG	2 cut(s)	228, 799
Eco24I	GRGCYC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	743
Eco57I	CTGAAG	2 cut(s)	136, 320
Eco81I	CCTNAGG	1 cut(s)	579
EcoNI	CCTNNNNNAGG	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	743
EcoRI	GAATTC	1 cut(s)	876
EcoRII	CCWGG	2 cut(s)	708, 840
EcoT14I	CCWWGG	2 cut(s)	228, 799
EcoT22I	ATGCAT	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	71
ErhI	CCWWGG	2 cut(s)	228, 799
FaeI	CATG	5 cut(s)	225, 593, 665, 803, 884
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FaqI	GGGAC	2 cut(s)	210, 756
FatI	CATG	5 cut(s)	221, 589, 661, 799, 880
Fnu4HI	GCNGC	4 cut(s)	203, 290, 378, 468
FokI	GGATG	1 cut(s)	385
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	4 cut(s)	203, 290, 378, 468
FspBI	CTAG	1 cut(s)	617
GlaI	GCGC	2 cut(s)	33, 687
GluI	GCNGC	4 cut(s)	203, 290, 378, 468
GsaI	CCCAGC	3 cut(s)	430, 704, 742
GsuI	CTGGAG	2 cut(s)	21, 285
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	1 cut(s)	626
HhaI	GCGC	2 cut(s)	34, 688
Hin1II	CATG	5 cut(s)	225, 593, 665, 803, 884
Hin6I	GCGC	2 cut(s)	32, 686
HinP1I	GCGC	2 cut(s)	32, 686
HindIII	AAGCTT	2 cut(s)	320, 690
HinfI	GANTC	1 cut(s)	554
HphI	GGTGA	4 cut(s)	368, 442, 660, 788
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	5 cut(s)	21, 66, 132, 155, 544
Hpy188III	TCNNGA	4 cut(s)	264, 351, 644, 881
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	5 cut(s)	102, 186, 267, 430, 731
HpyCH4III	ACNGT	1 cut(s)	540
HpyCH4IV	ACGT	1 cut(s)	99
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 47, 295, 476, 529
HpyF3I	CTNAG	7 cut(s)	44, 53, 65, 129, 365, 453, 579
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	5 cut(s)	225, 593, 665, 803, 884
HspAI	GCGC	2 cut(s)	32, 686
KpnI	GGTACC	1 cut(s)	452
Kzo9I	GATC	5 cut(s)	331, 370, 604, 809, 901
LmnI	GCTCC	1 cut(s)	583
Lsp1109I	GCAGC	4 cut(s)	214, 301, 364, 454
LweI	GCATC	1 cut(s)	488
MaeI	CTAG	1 cut(s)	617
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	794
MalI	GATC	5 cut(s)	333, 372, 606, 811, 903
MboI	GATC	5 cut(s)	331, 370, 604, 809, 901
MboII	GAAGA	7 cut(s)	142, 320, 326, 371, 563, 665, 707
MflI	RGATCY	2 cut(s)	331, 604
MhlI	GDGCHC	2 cut(s)	52, 71
MluCI	AATT	4 cut(s)	512, 728, 876, 909
MmeI	TCCRAC	1 cut(s)	120
Mph1103I	ATGCAT	1 cut(s)	481
MseI	TTAA	6 cut(s)	5, 303, 318, 474, 765, 849
MslI	CAYNNNNRTG	1 cut(s)	885
MspCI	CTTAAG	1 cut(s)	317
MspR9I	CCNGG	2 cut(s)	710, 842
Mva1269I	GAATGC	1 cut(s)	423
MvaI	CCWGG	2 cut(s)	710, 842
MwoI	GCNNNNNNNGC	5 cut(s)	38, 47, 295, 476, 529
NcoI	CCATGG	1 cut(s)	799
NdeII	GATC	5 cut(s)	331, 370, 604, 809, 901
NlaIII	CATG	5 cut(s)	225, 593, 665, 803, 884
NlaIV	GGNNCC	2 cut(s)	450, 744
NmuCI	GTSAC	1 cut(s)	794
NsiI	ATGCAT	1 cut(s)	481
NspI	RCATGY	1 cut(s)	665
NspV	TTCGAA	1 cut(s)	724
PagI	TCATGA	1 cut(s)	880
PasI	CCCWGGG	1 cut(s)	841
PciI	ACATGT	1 cut(s)	661
PctI	GAATGC	1 cut(s)	423
PfeI	GAWTC	1 cut(s)	554
PkrI	GCNGC	4 cut(s)	204, 291, 379, 469
PpuMI	RGGWCCY	1 cut(s)	743
PscI	ACATGT	1 cut(s)	661
Psp1406I	AACGTT	1 cut(s)	99
Psp5II	RGGWCCY	1 cut(s)	743
Psp6I	CCWGG	2 cut(s)	708, 840
PspFI	CCCAGC	3 cut(s)	426, 700, 738
PspGI	CCWGG	2 cut(s)	708, 840
PspN4I	GGNNCC	2 cut(s)	450, 744
PspPI	GGNCC	2 cut(s)	625, 743
PspPPI	RGGWCCY	1 cut(s)	743
PstI	CTGCAG	2 cut(s)	204, 382
PsuI	RGATCY	2 cut(s)	331, 604
RsaI	GTAC	5 cut(s)	235, 450, 537, 561, 660
RsaNI	GTAC	5 cut(s)	234, 449, 536, 560, 659
RseI	CAYNNNNRTG	1 cut(s)	885
SaqAI	TTAA	6 cut(s)	5, 303, 318, 474, 765, 849
SatI	GCNGC	4 cut(s)	203, 290, 378, 468
Sau3AI	GATC	5 cut(s)	331, 370, 604, 809, 901
Sau96I	GGNCC	2 cut(s)	625, 743
ScaI	AGTACT	2 cut(s)	537, 561
ScrFI	CCNGG	2 cut(s)	710, 842
SduI	GDGCHC	2 cut(s)	52, 71
SfaNI	GCATC	1 cut(s)	488
SfcI	CTRYAG	2 cut(s)	200, 378
SfuI	TTCGAA	1 cut(s)	724
SinI	GGWCC	1 cut(s)	743
SmiMI	CAYNNNNRTG	1 cut(s)	885
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	4 cut(s)	512, 728, 876, 909
SspI	AATATT	1 cut(s)	282
SspMI	CTAG	1 cut(s)	617
StyD4I	CCNGG	2 cut(s)	708, 840
StyI	CCWWGG	2 cut(s)	228, 799
TaaI	ACNGT	1 cut(s)	540
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	4 cut(s)	389, 459, 643, 724
TasI	AATT	4 cut(s)	512, 728, 876, 909
TatI	WGTACW	3 cut(s)	535, 559, 658
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	6 cut(s)	5, 303, 318, 474, 765, 849
Tru9I	TTAA	6 cut(s)	5, 303, 318, 474, 765, 849
TscAI	CASTG	2 cut(s)	52, 373
TseFI	GTSAC	1 cut(s)	794
TseI	GCWGC	4 cut(s)	202, 289, 377, 467
Tsp45I	GTSAC	1 cut(s)	794
TspDTI	ATGAA	2 cut(s)	578, 869
TspRI	CASTG	2 cut(s)	52, 373
Vha464I	CTTAAG	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	743
XagI	CCTNNNNNAGG	1 cut(s)	620
XapI	RAATTY	3 cut(s)	512, 728, 876
XceI	RCATGY	1 cut(s)	665
XspI	CTAG	1 cut(s)	617
ZrmI	AGTACT	2 cut(s)	537, 561
Zsp2I	ATGCAT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.