Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0009589

Physical Location & Seq

Genomic Coordinates Forward (+)

40028629 .. 40036089

Gene Structure 7461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00030420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTTAAGGATATCTCATCTGACACCAATAGCGTCTCCAGCTTTCAGTGCTCTTAGACTCTCTCTCACTTCCACTCTCAACCTCTCGACTCCTTTAAACCTTCACAAAATCTCTACTTGTTCTGCACTTTATCGTCTCTCCCAGACCTTCAAACCCACTTCGCCCAGTTCGTCCTTTTTGAGCGCCAACCGGGTGCTTCTGCGTGTCATGGGAAGTCCAGGTCCCAAGGGTTCAGCTTCATTTAGTGCTGAAAGTAGCTCTGGTGATGGAAGGGAGATATTGGTCCAGCACTTACTTGTTAAAGAAGACAATCTTAAGCTTCTGTTAGATCTTCAGCAGAGAGTTTCACAAGGTGAAGACCTTAGTGATCTTGCTGCTGAGTACTCGACATGTCCATCCAAAGAAGAAGGGGGAATGCTGGGGTGGGTGAGAAAGGGGCAAATGGTACCTGAATTTGAGGAGGCTGCATTTAGTGCATCTTTAAACAAAGTTGTTAGGTGTAAAACAAAATTTGGATGGCATTTATTGCAAGTACTGTCAGAGAGGGAGGAATCAGTACTTCAAAACATTCAATGCAAGGAGCTTCATGTGAAAATGCAAGATCCCAGTTTCATAGATGAGGCACAGTTGATTGATGTTCGAGAACCTGAAGAAGTGGCCCAAGCTTCTTTATCGGGTTTCCAGGTCCTTCCCCTTCGACAATTTGGAAGCTGGGGACCTGACATAACCACGAAGTTCAATCCTCAAAAGGATACTTATGTTATGTGTCACCATGGTATGCGATCTTTACAGGTTGCCCAGTGGTTGCAGACACAGGGTTTCAAGAGAGTCTTCAATGTCGCTGGGGGAATTCATGAATATGCTCGAACGGTTGATCAAACAATTCCCACTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese Rotamase_3

Protein Analysis

298

Amino Acids

33.13

Weight (kDa)

7.09

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rotamase_3	PF13616	101 - 180	8e-17	PPIC-type PPIASE domain
Rotamase	PF00639	105 - 178	3.5e-15	PPIC-type PPIASE domain
Rhodanese	PF00581	205 - 288	2e-10	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19370
fragaria_vesca	FvH4_3g27810 FvH4_3g27810
malus_domestica	MD11G1184200.v1.1
prunus_persica	Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1
pyrus_communis	pycom12g08850
rosa_chinensis	RchiOBHm_Chr5g0050451
rosa_laevigata	RLG00000034703
rosa_multiflora	Rmu_sc0003202.1_g000006
rosa_roxburghii	Rroxscaffold_1G00030420
rosa_rugosa	Rorug05G0261100
rosa_samantha	Rh5AG332800 Rh5BG343000 Rh5CG370100 Rh5DG355600
rosa_wichuraiana	Rw5G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	445
AccB1I	GGYRCC	1 cut(s)	445
AclWI	GGATC	1 cut(s)	596
AcsI	RAATTY	3 cut(s)	452, 509, 849
AcuI	CTGAAG	2 cut(s)	317, 669
AdeI	CACNNNGTG	1 cut(s)	353
AfaI	GTAC	4 cut(s)	383, 447, 534, 558
AflII	CTTAAG	1 cut(s)	314
AflIII	ACRYGT	1 cut(s)	389
AgsI	TTSAA	6 cut(s)	151, 563, 572, 739, 823, 835
AjnI	CCWGG	2 cut(s)	217, 681
AluBI	AGCT	7 cut(s)	41, 236, 258, 319, 583, 665, 711
AluI	AGCT	7 cut(s)	41, 236, 258, 319, 583, 665, 711
Alw21I	GWGCWC	1 cut(s)	52
Alw26I	GTCTC	2 cut(s)	39, 140
AlwI	GGATC	1 cut(s)	596
AoxI	GGCC	1 cut(s)	657
ApeKI	GCWGC	2 cut(s)	374, 464
ApoI	RAATTY	3 cut(s)	452, 509, 849
Asp718I	GGTACC	1 cut(s)	445
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	5 cut(s)	221, 283, 658, 685, 716
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	4 cut(s)	275, 365, 439, 761
AvaII	GGWCC	4 cut(s)	221, 283, 685, 716
BaeI	ACNNNNGTAYC	2 cut(s)	744, 777
BanI	GGYRCC	1 cut(s)	445
BbsI	GAAGAC	3 cut(s)	312, 363, 823
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	2 cut(s)	361, 451
BccI	CCATC	3 cut(s)	260, 403, 510
BciT130I	CCWGG	2 cut(s)	219, 683
BciVI	GTATCC	1 cut(s)	745
BclI	TGATCA	1 cut(s)	874
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	2 cut(s)	39, 140
BfoI	RGCGCY	1 cut(s)	186
BfrI	CTTAAG	1 cut(s)	314
BfuI	GTATCC	1 cut(s)	745
BglII	AGATCT	1 cut(s)	328
BisI	GCNGC	2 cut(s)	375, 465
BlsI	GCNGC	2 cut(s)	376, 466
BmcAI	AGTACT	3 cut(s)	383, 534, 558
Bme1390I	CCNGG	3 cut(s)	191, 219, 683
Bme18I	GGWCC	4 cut(s)	221, 283, 685, 716
BmgT120I	GGNCC	5 cut(s)	221, 283, 658, 685, 716
BmiI	GGNNCC	3 cut(s)	223, 447, 717
BmrFI	CCNGG	3 cut(s)	191, 219, 683
BmrI	ACTGGG	3 cut(s)	159, 600, 793
BmsI	GCATC	1 cut(s)	485
BmuI	ACTGGG	3 cut(s)	159, 600, 793
BpiI	GAAGAC	3 cut(s)	312, 363, 823
BpmI	CTGGAG	1 cut(s)	21
BpuMI	CCSGG	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	225, 772
Bse1I	ACTGG	3 cut(s)	165, 606, 799
BseBI	CCWGG	2 cut(s)	219, 683
BseDI	CCNNGG	2 cut(s)	225, 772
BseGI	GGATG	2 cut(s)	395, 521
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	3 cut(s)	165, 606, 799
BseRI	GAGGAG	1 cut(s)	473
BseXI	GCAGC	2 cut(s)	361, 451
BseYI	CCCAGC	3 cut(s)	418, 711, 842
BsgI	GTGCAG	1 cut(s)	108
BshFI	GGCC	1 cut(s)	659
BshNI	GGYRCC	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	190
BslFI	GGGAC	2 cut(s)	207, 729
BsmAI	GTCTC	2 cut(s)	39, 140
BsmBI	CGTCTC	2 cut(s)	39, 140
BsmFI	GGGAC	2 cut(s)	207, 729
BsmI	GAATGC	1 cut(s)	420
BsnI	GGCC	1 cut(s)	659
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	5 cut(s)	328, 367, 601, 782, 874
Bsp19I	CCATGG	1 cut(s)	772
BspANI	GGCC	1 cut(s)	659
BspCNI	CTCAG	1 cut(s)	370
BspHI	TCATGA	1 cut(s)	853
BspLI	GGNNCC	3 cut(s)	223, 447, 717
BspPI	GGATC	1 cut(s)	596
BspT107I	GGYRCC	1 cut(s)	445
BspTI	CTTAAG	1 cut(s)	314
BsrI	ACTGG	3 cut(s)	165, 606, 799
BssECI	CCNNGG	2 cut(s)	225, 772
BssMI	GATC	5 cut(s)	328, 367, 601, 782, 874
BssT1I	CCWWGG	2 cut(s)	225, 772
Bst2UI	CCWGG	2 cut(s)	219, 683
Bst4CI	ACNGT	3 cut(s)	537, 627, 871
BstAFI	CTTAAG	1 cut(s)	314
BstAPI	GCANNNNNTGC	2 cut(s)	473, 526
BstDEI	CTNAG	3 cut(s)	53, 362, 378
BstDSI	CCRYGG	1 cut(s)	772
BstF5I	GGATG	2 cut(s)	395, 521
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	5 cut(s)	331, 370, 604, 785, 877
BstMAI	GTCTC	2 cut(s)	39, 140
BstMBI	GATC	5 cut(s)	328, 367, 601, 782, 874
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 47, 473, 526
BstNI	CCWGG	2 cut(s)	219, 683
BstNSI	RCATGY	1 cut(s)	393
BstSCI	CCNGG	3 cut(s)	189, 217, 681
BstV1I	GCAGC	2 cut(s)	361, 451
BstV2I	GAAGAC	3 cut(s)	312, 363, 823
BstX2I	RGATCY	2 cut(s)	328, 601
BstYI	RGATCY	2 cut(s)	328, 601
BsuI	GTATCC	1 cut(s)	745
BsuRI	GGCC	1 cut(s)	659
BtgI	CCRYGG	1 cut(s)	772
BtsCI	GGATG	2 cut(s)	395, 521
BtsIMutI	CAGTG	2 cut(s)	52, 806
CciI	TCATGA	1 cut(s)	853
CfoI	GCGC	1 cut(s)	185
Cfr13I	GGNCC	5 cut(s)	221, 283, 658, 685, 716
CseI	GACGC	1 cut(s)	21
Csp6I	GTAC	4 cut(s)	382, 446, 533, 557
CviAII	CATG	5 cut(s)	208, 390, 587, 773, 854
CviJI	RGCY	9 cut(s)	41, 236, 258, 319, 464, 583, 659, 665, 711
CviKI_1	RGCY	9 cut(s)	41, 236, 258, 319, 464, 583, 659, 665, 711
CviQI	GTAC	4 cut(s)	382, 446, 533, 557
DdeI	CTNAG	3 cut(s)	53, 362, 378
DpnI	GATC	5 cut(s)	330, 369, 603, 784, 876
DpnII	GATC	5 cut(s)	328, 367, 601, 782, 874
DraI	TTTAAA	2 cut(s)	96, 483
DraIII	CACNNNGTG	1 cut(s)	353
Eco130I	CCWWGG	2 cut(s)	225, 772
Eco32I	GATATC	1 cut(s)	12
Eco47I	GGWCC	4 cut(s)	221, 283, 685, 716
Eco57I	CTGAAG	2 cut(s)	317, 669
EcoO109I	RGGNCCY	3 cut(s)	221, 685, 716
EcoRI	GAATTC	1 cut(s)	849
EcoRII	CCWGG	2 cut(s)	217, 681
EcoRV	GATATC	1 cut(s)	12
EcoT14I	CCWWGG	2 cut(s)	225, 772
ErhI	CCWWGG	2 cut(s)	225, 772
Esp3I	CGTCTC	2 cut(s)	39, 140
FaeI	CATG	5 cut(s)	211, 393, 590, 776, 857
FalI	AAGNNNNNCTT	4 cut(s)	297, 329, 815, 847
FaqI	GGGAC	2 cut(s)	207, 729
FatI	CATG	5 cut(s)	207, 389, 586, 772, 853
FbaI	TGATCA	1 cut(s)	874
Fnu4HI	GCNGC	2 cut(s)	375, 465
FokI	GGATG	2 cut(s)	382, 528
Fsp4HI	GCNGC	2 cut(s)	375, 465
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	2 cut(s)	375, 465
GsaI	CCCAGC	3 cut(s)	422, 715, 846
GsuI	CTGGAG	1 cut(s)	21
HaeII	RGCGCY	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	659
HapII	CCGG	1 cut(s)	190
HgaI	GACGC	1 cut(s)	21
HhaI	GCGC	1 cut(s)	185
Hin1II	CATG	5 cut(s)	211, 393, 590, 776, 857
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HindIII	AAGCTT	2 cut(s)	317, 663
HinfI	GANTC	4 cut(s)	57, 88, 551, 828
HpaII	CCGG	1 cut(s)	190
HphI	GGTGA	4 cut(s)	275, 365, 439, 761
Hpy188I	TCNGA	2 cut(s)	21, 541
Hpy188III	TCNNGA	4 cut(s)	85, 641, 823, 854
HpyAV	CCTTC	6 cut(s)	110, 157, 264, 401, 698, 704
HpyCH4III	ACNGT	3 cut(s)	537, 627, 871
HpyCH4V	TGCA	7 cut(s)	125, 467, 476, 529, 576, 598, 808
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 47, 473, 526
HpyF3I	CTNAG	3 cut(s)	53, 362, 378
Hsp92II	CATG	5 cut(s)	211, 393, 590, 776, 857
HspAI	GCGC	1 cut(s)	183
KpnI	GGTACC	1 cut(s)	449
Ksp22I	TGATCA	1 cut(s)	874
Kzo9I	GATC	5 cut(s)	328, 367, 601, 782, 874
LmnI	GCTCC	1 cut(s)	580
Lsp1109I	GCAGC	2 cut(s)	361, 451
LweI	GCATC	1 cut(s)	485
MaeIII	GTNAC	1 cut(s)	767
MalI	GATC	5 cut(s)	330, 369, 603, 784, 876
MboI	GATC	5 cut(s)	328, 367, 601, 782, 874
MboII	GAAGA	6 cut(s)	317, 323, 368, 416, 662, 823
MflI	RGATCY	2 cut(s)	328, 601
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	5 cut(s)	452, 509, 701, 849, 882
MlyI	GAGTC	3 cut(s)	51, 82, 837
MnlI	CCTC	7 cut(s)	92, 451, 454, 537, 541, 613, 753
MseI	TTAA	5 cut(s)	5, 95, 300, 315, 482
MslI	CAYNNNNRTG	1 cut(s)	858
MspCI	CTTAAG	1 cut(s)	314
MspI	CCGG	1 cut(s)	190
MspR9I	CCNGG	3 cut(s)	191, 219, 683
Mva1269I	GAATGC	1 cut(s)	420
MvaI	CCWGG	2 cut(s)	219, 683
MwoI	GCNNNNNNNGC	4 cut(s)	38, 47, 473, 526
NciI	CCSGG	1 cut(s)	191
NcoI	CCATGG	1 cut(s)	772
NdeII	GATC	5 cut(s)	328, 367, 601, 782, 874
NlaIII	CATG	5 cut(s)	211, 393, 590, 776, 857
NlaIV	GGNNCC	3 cut(s)	223, 447, 717
NmuCI	GTSAC	1 cut(s)	767
NspI	RCATGY	1 cut(s)	393
PagI	TCATGA	1 cut(s)	853
PciI	ACATGT	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PctI	GAATGC	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	551
PkrI	GCNGC	2 cut(s)	376, 466
PleI	GAGTC	3 cut(s)	51, 82, 836
PpsI	GAGTC	3 cut(s)	51, 82, 836
PpuMI	RGGWCCY	3 cut(s)	221, 685, 716
PscI	ACATGT	1 cut(s)	389
Psp5II	RGGWCCY	3 cut(s)	221, 685, 716
Psp6I	CCWGG	2 cut(s)	217, 681
PspFI	CCCAGC	3 cut(s)	418, 711, 842
PspGI	CCWGG	2 cut(s)	217, 681
PspN4I	GGNNCC	3 cut(s)	223, 447, 717
PspPI	GGNCC	5 cut(s)	221, 283, 658, 685, 716
PspPPI	RGGWCCY	3 cut(s)	221, 685, 716
PsuI	RGATCY	2 cut(s)	328, 601
RsaI	GTAC	4 cut(s)	383, 447, 534, 558
RsaNI	GTAC	4 cut(s)	382, 446, 533, 557
RseI	CAYNNNNRTG	1 cut(s)	858
SaqAI	TTAA	5 cut(s)	5, 95, 300, 315, 482
SatI	GCNGC	2 cut(s)	375, 465
Sau3AI	GATC	5 cut(s)	328, 367, 601, 782, 874
Sau96I	GGNCC	5 cut(s)	221, 283, 658, 685, 716
ScaI	AGTACT	3 cut(s)	383, 534, 558
SchI	GAGTC	3 cut(s)	51, 82, 837
ScrFI	CCNGG	3 cut(s)	191, 219, 683
SduI	GDGCHC	1 cut(s)	52
SfaNI	GCATC	1 cut(s)	485
SinI	GGWCC	4 cut(s)	221, 283, 685, 716
SmiMI	CAYNNNNRTG	1 cut(s)	858
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	5 cut(s)	452, 509, 701, 849, 882
StyD4I	CCNGG	3 cut(s)	189, 217, 681
StyI	CCWWGG	2 cut(s)	225, 772
TaaI	ACNGT	3 cut(s)	537, 627, 871
TaqI	TCGA	5 cut(s)	86, 386, 640, 697, 865
TasI	AATT	5 cut(s)	452, 509, 701, 849, 882
TatI	WGTACW	3 cut(s)	381, 532, 556
TfiI	GAWTC	1 cut(s)	551
Tru1I	TTAA	5 cut(s)	5, 95, 300, 315, 482
Tru9I	TTAA	5 cut(s)	5, 95, 300, 315, 482
TscAI	CASTG	2 cut(s)	52, 806
TseFI	GTSAC	1 cut(s)	767
TseI	GCWGC	2 cut(s)	374, 464
Tsp45I	GTSAC	1 cut(s)	767
TspDTI	ATGAA	5 cut(s)	228, 575, 601, 842, 870
TspRI	CASTG	2 cut(s)	52, 806
Vha464I	CTTAAG	1 cut(s)	314
VpaK11BI	GGWCC	4 cut(s)	221, 283, 685, 716
XapI	RAATTY	3 cut(s)	452, 509, 849
XceI	RCATGY	1 cut(s)	393
ZrmI	AGTACT	3 cut(s)	383, 534, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.