Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0009589

Physical Location & Seq

Genomic Coordinates Reverse (-)

24525401 .. 24531251

Gene Structure 5851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1184200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTTCAGAGCTTCTTGTAATCTGAGACCAATAGCAACAGTGCCTCCAGCTCTGAATGCTCTTCTCTCTCCCAACCTCCACCTCTCTTCTCCTTCCAATCTCCCCACAATCTCCACTTTTGCACCGCTCTGTCACCCTACTTTTCTCTCTCACACCTCCTGCAAACCCGCTTCTTCCCGCGAGAGGCGGCTTCCGCTGCGCCTGATGGGTACTCCCTTTCCTCCCAAGAGCACAGCTTCGTTTAGTGCCGAAAGCGGCTCTGGAACTGGAAGGGAAATATTGGTGCAGCACTTGCTTCTTAAGGAAGACAACCTCAAACTTCTTGTGGATCTTCAGCAGAGAGTTTCAGCAGGTGAGGATCTCAGTGATCTTGCTACGGAATACTCAATATGTCCATCCAAGGAAGAGGGGGGAATGCTTGGATGGGTGAGAAAGGGCCAAATGGTACCTGAGTTTGAGGAGGCTGCTTTTAGTGCATCTTTGAACAAAGTTGTAAGGTGCAAAACACAATTTGGATGGCATTTATTGCAAGTACTTTCCGAGAGGGAAGAATCATTACTTCAAGACATTAAACCTGAGGAGCTTCATGTGAAGATGCAAGATCCCAGTTTCTTAGATGAGGCACAATTAATTGATGTTCGAGAACCTGATGAAGTAGCTCAAGCATCTTTGCTGGGTTTCCAGGTTCTTCCTCTTCGACAATTTGGGAGCTGGGGACCTGAAATAACTACAAAGTTTGATCCTCAAAAGGATACTTATGTTATGTGTCACCATGGCATGCGATCATTACAGGTTGCCAAGTGGTTGCAGACACAGGGTTTTAAGAGAGTATACAATGTTTCTGGCGGAATTCATGCGTATGCTCGGAAGGCTGATCAAACAATTCCTACTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese Rotamase_3

Protein Analysis

299

Amino Acids

33.21

Weight (kDa)

6.76

Isoelectric Point (pI)

55.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rotamase_3	PF13616	101 - 180	1.2e-16	PPIC-type PPIASE domain
Rotamase	PF00639	106 - 178	2.9e-14	PPIC-type PPIASE domain
Rhodanese	PF00581	193 - 289	6.4e-11	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19370
fragaria_vesca	FvH4_3g27810 FvH4_3g27810
malus_domestica	MD11G1184200.v1.1
prunus_persica	Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1
pyrus_communis	pycom12g08850
rosa_chinensis	RchiOBHm_Chr5g0050451
rosa_laevigata	RLG00000034703
rosa_multiflora	Rmu_sc0003202.1_g000006
rosa_roxburghii	Rroxscaffold_1G00030420
rosa_rugosa	Rorug05G0261100
rosa_samantha	Rh5AG332800 Rh5BG343000 Rh5CG370100 Rh5DG355600
rosa_wichuraiana	Rw5G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	341
Acc36I	ACCTGC	1 cut(s)	341
Acc65I	GGTACC	1 cut(s)	445
AccB1I	GGYRCC	1 cut(s)	445
AccBSI	CCGCTC	1 cut(s)	127
AccI	GTMKAC	1 cut(s)	831
AccII	CGCG	1 cut(s)	180
AciI	CCGC	7 cut(s)	125, 168, 178, 187, 194, 255, 846
AclWI	GGATC	4 cut(s)	336, 366, 596, 734
AcsI	RAATTY	1 cut(s)	849
AcuI	CTGAAG	1 cut(s)	317
AfaI	GTAC	3 cut(s)	211, 447, 534
AfiI	CCNNNNNNNGG	1 cut(s)	183
AflII	CTTAAG	1 cut(s)	299
AgsI	TTSAA	2 cut(s)	484, 563
AjnI	CCWGG	1 cut(s)	681
AluBI	AGCT	6 cut(s)	11, 50, 236, 583, 659, 711
AluI	AGCT	6 cut(s)	11, 50, 236, 583, 659, 711
Alw21I	GWGCWC	1 cut(s)	233
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	4 cut(s)	336, 366, 596, 734
AoxI	GGCC	1 cut(s)	436
ApeKI	GCWGC	3 cut(s)	196, 286, 464
ApoI	RAATTY	1 cut(s)	849
AseI	ATTAAT	1 cut(s)	629
Asp718I	GGTACC	1 cut(s)	445
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	2 cut(s)	436, 716
AsuHPI	GGTGA	4 cut(s)	125, 365, 439, 761
AvaII	GGWCC	1 cut(s)	716
AxyI	CCTNAGG	1 cut(s)	576
BaeI	ACNNNNGTAYC	4 cut(s)	437, 470, 744, 777
BanI	GGYRCC	1 cut(s)	445
BarI	GAAGNNNNNNTAC	2 cut(s)	540, 572
BbsI	GAAGAC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	233
BbvI	GCAGC	3 cut(s)	183, 298, 451
BccI	CCATC	4 cut(s)	199, 403, 417, 510
BciT130I	CCWGG	1 cut(s)	683
BciVI	GTATCC	1 cut(s)	745
BclI	TGATCA	1 cut(s)	874
BcoDI	GTCTC	1 cut(s)	19
BfrI	CTTAAG	1 cut(s)	299
BfuAI	ACCTGC	1 cut(s)	341
BfuI	GTATCC	1 cut(s)	745
BisI	GCNGC	5 cut(s)	188, 197, 256, 287, 465
BlsI	GCNGC	5 cut(s)	189, 198, 257, 288, 466
BmcAI	AGTACT	1 cut(s)	534
Bme1390I	CCNGG	1 cut(s)	683
Bme18I	GGWCC	1 cut(s)	716
BmgT120I	GGNCC	2 cut(s)	436, 716
BmiI	GGNNCC	2 cut(s)	447, 717
BmrFI	CCNGG	1 cut(s)	683
BmrI	ACTGGG	1 cut(s)	600
BmsI	GCATC	3 cut(s)	485, 585, 674
BmuI	ACTGGG	1 cut(s)	600
BpiI	GAAGAC	1 cut(s)	312
BpmI	CTGGAG	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	645
BsaI	GGTCTC	1 cut(s)	19
BsaJI	CCNNGG	2 cut(s)	399, 772
BsaXI	ACNNNNNCTCC	2 cut(s)	28, 58
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse1I	ACTGG	2 cut(s)	271, 606
Bse21I	CCTNAGG	1 cut(s)	576
BseBI	CCWGG	1 cut(s)	683
BseDI	CCNNGG	2 cut(s)	399, 772
BseGI	GGATG	3 cut(s)	395, 428, 521
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMII	CTCAG	4 cut(s)	14, 376, 441, 567
BseNI	ACTGG	2 cut(s)	271, 606
BseRI	GAGGAG	2 cut(s)	473, 593
BseXI	GCAGC	3 cut(s)	183, 298, 451
BseYI	CCCAGC	2 cut(s)	673, 711
BsgI	GTGCAG	1 cut(s)	305
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	438
BshNI	GGYRCC	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	729
BslI	CCNNNNNNNGG	1 cut(s)	183
BsmAI	GTCTC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	729
BsmI	GAATGC	2 cut(s)	61, 420
BsnI	GGCC	1 cut(s)	438
Bso31I	GGTCTC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp143I	GATC	7 cut(s)	328, 358, 367, 601, 739, 782, 874
Bsp19I	CCATGG	1 cut(s)	772
BspACI	CCGC	7 cut(s)	125, 168, 178, 187, 194, 255, 846
BspANI	GGCC	1 cut(s)	438
BspCNI	CTCAG	4 cut(s)	15, 375, 442, 568
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	2 cut(s)	447, 717
BspMI	ACCTGC	1 cut(s)	341
BspPI	GGATC	4 cut(s)	336, 366, 596, 734
BspQI	GCTCTTC	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	445
BspTI	CTTAAG	1 cut(s)	299
BspTNI	GGTCTC	1 cut(s)	19
BsrBI	CCGCTC	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	271, 606
BssECI	CCNNGG	2 cut(s)	399, 772
BssMI	GATC	7 cut(s)	328, 358, 367, 601, 739, 782, 874
BssNAI	GTATAC	1 cut(s)	832
BssT1I	CCWWGG	2 cut(s)	399, 772
Bst1107I	GTATAC	1 cut(s)	832
Bst2UI	CCWGG	1 cut(s)	683
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	4 cut(s)	66, 91, 399, 699
BstAFI	CTTAAG	1 cut(s)	299
BstAPI	GCANNNNNTGC	2 cut(s)	292, 526
BstC8I	GCNNGC	1 cut(s)	779
BstDEI	CTNAG	5 cut(s)	23, 362, 450, 576, 613
BstDSI	CCRYGG	1 cut(s)	772
BstF5I	GGATG	3 cut(s)	395, 428, 521
BstFNI	CGCG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	7 cut(s)	331, 361, 370, 604, 742, 785, 877
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	7 cut(s)	328, 358, 367, 601, 739, 782, 874
BstMWI	GCNNNNNNNGC	7 cut(s)	56, 193, 196, 292, 473, 526, 869
BstNI	CCWGG	1 cut(s)	683
BstNSI	RCATGY	1 cut(s)	781
BstSCI	CCNGG	1 cut(s)	681
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	3 cut(s)	183, 298, 451
BstV2I	GAAGAC	1 cut(s)	312
BstX2I	RGATCY	3 cut(s)	328, 358, 601
BstYI	RGATCY	3 cut(s)	328, 358, 601
BstZ17I	GTATAC	1 cut(s)	832
Bsu36I	CCTNAGG	1 cut(s)	576
BsuI	GTATCC	1 cut(s)	745
BsuRI	GGCC	1 cut(s)	438
BtgI	CCRYGG	1 cut(s)	772
BtsCI	GGATG	3 cut(s)	395, 428, 521
BtsIMutI	CAGTG	2 cut(s)	45, 370
BveI	ACCTGC	1 cut(s)	341
Cac8I	GCNNGC	1 cut(s)	779
CfoI	GCGC	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	436, 716
Csp6I	GTAC	3 cut(s)	210, 446, 533
CviAII	CATG	4 cut(s)	587, 773, 778, 854
CviQI	GTAC	3 cut(s)	210, 446, 533
DdeI	CTNAG	5 cut(s)	23, 362, 450, 576, 613
DpnI	GATC	7 cut(s)	330, 360, 369, 603, 741, 784, 876
DpnII	GATC	7 cut(s)	328, 358, 367, 601, 739, 782, 874
Eam1104I	CTCTTC	4 cut(s)	66, 91, 399, 699
EarI	CTCTTC	4 cut(s)	66, 91, 399, 699
EciI	GGCGGA	1 cut(s)	861
Eco130I	CCWWGG	2 cut(s)	399, 772
Eco31I	GGTCTC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	716
Eco57I	CTGAAG	1 cut(s)	317
Eco81I	CCTNAGG	1 cut(s)	576
EcoO109I	RGGNCCY	1 cut(s)	716
EcoRI	GAATTC	1 cut(s)	849
EcoRII	CCWGG	1 cut(s)	681
EcoT14I	CCWWGG	2 cut(s)	399, 772
ErhI	CCWWGG	2 cut(s)	399, 772
FaeI	CATG	4 cut(s)	590, 776, 781, 857
FaiI	YATR	9 cut(s)	391, 588, 759, 764, 774, 779, 832, 855, 861
FaqI	GGGAC	1 cut(s)	729
FatI	CATG	4 cut(s)	586, 772, 777, 853
FauI	CCCGC	2 cut(s)	175, 185
FbaI	TGATCA	1 cut(s)	874
FblI	GTMKAC	1 cut(s)	831
Fnu4HI	GCNGC	5 cut(s)	188, 197, 256, 287, 465
FokI	GGATG	3 cut(s)	382, 435, 528
Fsp4HI	GCNGC	5 cut(s)	188, 197, 256, 287, 465
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	5 cut(s)	188, 197, 256, 287, 465
GsaI	CCCAGC	2 cut(s)	677, 715
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	438
HhaI	GCGC	1 cut(s)	201
Hin1II	CATG	4 cut(s)	590, 776, 781, 857
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	551
HphI	GGTGA	4 cut(s)	125, 365, 439, 761
Hpy166II	GTNNAC	1 cut(s)	832
Hpy188I	TCNGA	5 cut(s)	8, 24, 54, 541, 867
Hpy188III	TCNNGA	3 cut(s)	261, 563, 641
Hpy8I	GTNNAC	1 cut(s)	832
HpyAV	CCTTC	3 cut(s)	102, 264, 862
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	8 cut(s)	122, 162, 286, 476, 501, 529, 598, 808
HpyF10VI	GCNNNNNNNGC	7 cut(s)	56, 193, 196, 292, 473, 526, 869
HpyF3I	CTNAG	5 cut(s)	23, 362, 450, 576, 613
Hsp92II	CATG	4 cut(s)	590, 776, 781, 857
HspAI	GCGC	1 cut(s)	199
KpnI	GGTACC	1 cut(s)	449
Ksp22I	TGATCA	1 cut(s)	874
Kzo9I	GATC	7 cut(s)	328, 358, 367, 601, 739, 782, 874
LguI	GCTCTTC	1 cut(s)	66
LmnI	GCTCC	2 cut(s)	580, 708
Lsp1109I	GCAGC	3 cut(s)	183, 298, 451
LweI	GCATC	3 cut(s)	485, 585, 674
MaeIII	GTNAC	2 cut(s)	131, 767
MalI	GATC	7 cut(s)	330, 360, 369, 603, 741, 784, 876
MbiI	CCGCTC	1 cut(s)	127
MboI	GATC	7 cut(s)	328, 358, 367, 601, 739, 782, 874
MflI	RGATCY	3 cut(s)	328, 358, 601
MhlI	GDGCHC	1 cut(s)	233
MluCI	AATT	6 cut(s)	509, 626, 630, 701, 849, 882
MseI	TTAA	4 cut(s)	300, 570, 629, 822
MslI	CAYNNNNRTG	1 cut(s)	858
MspA1I	CMGCKG	1 cut(s)	196
MspCI	CTTAAG	1 cut(s)	299
MspR9I	CCNGG	1 cut(s)	683
Mva1269I	GAATGC	2 cut(s)	61, 420
MvaI	CCWGG	1 cut(s)	683
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	7 cut(s)	56, 193, 196, 292, 473, 526, 869
NcoI	CCATGG	1 cut(s)	772
NdeII	GATC	7 cut(s)	328, 358, 367, 601, 739, 782, 874
NlaIII	CATG	4 cut(s)	590, 776, 781, 857
NlaIV	GGNNCC	2 cut(s)	447, 717
NmuCI	GTSAC	2 cut(s)	131, 767
NspI	RCATGY	1 cut(s)	781
PaeI	GCATGC	1 cut(s)	781
PaqCI	CACCTGC	1 cut(s)	341
PciSI	GCTCTTC	1 cut(s)	66
PctI	GAATGC	2 cut(s)	61, 420
PfeI	GAWTC	1 cut(s)	551
PkrI	GCNGC	5 cut(s)	189, 198, 257, 288, 466
PpuMI	RGGWCCY	1 cut(s)	716
PshBI	ATTAAT	1 cut(s)	629
Psp5II	RGGWCCY	1 cut(s)	716
Psp6I	CCWGG	1 cut(s)	681
PspFI	CCCAGC	2 cut(s)	673, 711
PspGI	CCWGG	1 cut(s)	681
PspN4I	GGNNCC	2 cut(s)	447, 717
PspPI	GGNCC	2 cut(s)	436, 716
PspPPI	RGGWCCY	1 cut(s)	716
PsuI	RGATCY	3 cut(s)	328, 358, 601
RsaI	GTAC	3 cut(s)	211, 447, 534
RsaNI	GTAC	3 cut(s)	210, 446, 533
RseI	CAYNNNNRTG	1 cut(s)	858
SapI	GCTCTTC	1 cut(s)	66
SaqAI	TTAA	4 cut(s)	300, 570, 629, 822
SatI	GCNGC	5 cut(s)	188, 197, 256, 287, 465
Sau3AI	GATC	7 cut(s)	328, 358, 367, 601, 739, 782, 874
Sau96I	GGNCC	2 cut(s)	436, 716
ScaI	AGTACT	1 cut(s)	534
ScrFI	CCNGG	1 cut(s)	683
SduI	GDGCHC	1 cut(s)	233
SfaNI	GCATC	3 cut(s)	485, 585, 674
SinI	GGWCC	1 cut(s)	716
SmiMI	CAYNNNNRTG	1 cut(s)	858
SmlI	CTYRAG	2 cut(s)	299, 660
SmoI	CTYRAG	2 cut(s)	299, 660
SphI	GCATGC	1 cut(s)	781
Sse9I	AATT	6 cut(s)	509, 626, 630, 701, 849, 882
SsiI	CCGC	7 cut(s)	125, 168, 178, 187, 194, 255, 846
SspI	AATATT	1 cut(s)	279
StyD4I	CCNGG	1 cut(s)	681
StyI	CCWWGG	2 cut(s)	399, 772
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	2 cut(s)	640, 697
TasI	AATT	6 cut(s)	509, 626, 630, 701, 849, 882
TatI	WGTACW	1 cut(s)	532
TauI	GCSGC	2 cut(s)	190, 258
TfiI	GAWTC	1 cut(s)	551
Tru1I	TTAA	4 cut(s)	300, 570, 629, 822
Tru9I	TTAA	4 cut(s)	300, 570, 629, 822
TscAI	CASTG	2 cut(s)	45, 370
TseFI	GTSAC	2 cut(s)	131, 767
TseI	GCWGC	3 cut(s)	196, 286, 464
Tsp45I	GTSAC	2 cut(s)	131, 767
TspDTI	ATGAA	3 cut(s)	575, 666, 842
TspGWI	ACGGA	1 cut(s)	392
TspRI	CASTG	2 cut(s)	45, 370
Vha464I	CTTAAG	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	716
VspI	ATTAAT	1 cut(s)	629
XapI	RAATTY	1 cut(s)	849
XceI	RCATGY	1 cut(s)	781
XmiI	GTMKAC	1 cut(s)	831
ZrmI	AGTACT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.