Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009589

Physical Location & Seq

Genomic Coordinates Reverse (-)

20826685 .. 20833604

Gene Structure 6920 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g27810.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTTGAGGATATCTCATCTTAGACTCTCTCTCACTTCCACTCTCAACCTCTCGACTTGTTTAACCCTTCAAAAACTCTCTACTCGTTCTGCAGCTTCTCCACCTTGTCGTCTCTCCCACACCTTCAAACCAACTTCCCCCAATTCCAACCGGGTTCTTCTTCGTGTCATGGGCACTCCAGCTCCCAAGTGTAGAGCTTCATTTAGTTCTGAAAGTAGCTCTGGTGATGCAAGGGAGATATTGGTCCAGCACTTACTTGTCAAAGAAGACAATCTTAAGCTGCTGTTAGATCTTCAGCAGAGAATTTCACGAGGTGAAGACCTTAGTGATCTTGCTGCAGAGTACTCGATATGTCCATCCAAAGAAGAGGGGGGAATGCTTGGGTGGGTGAGAAAGGGGCAAATGGTACCTGAATTTGAGGAGACTGCATTTAGTGCATCTTTAAACAAAGTTGTTAGGTGCAAAACCAAATTTGGATGGCATTTATTGCAAGTACTGTCAGAGAGGGAGGAATCTGTACTTCAAAACATTCAATGCAAGGAGCTGCATGTGAAAATGCAAGATCCGAGTTTCTTAGACAAGGCACAGTTGATTGATGTCCGAGAACCTGAAGAAGTGGCCCAAGCTTCTTTATCCGGATTCCAGGTTCTTCCCCTTCGACAATTTGGAAGCTGGGGACCTGACATAACCACAAAATTCGATCCTCAAAAGGATACATATGTTATGTGTCACCATGGCATGCGATCTCTACAGGTTGCCCAGTGGTTGCAGACGCAGGGTTTCAAGAGAGTCTTCAATGTTGCTGGGGGAATTCATGAATACGCTCGAACGGTTGATCAAACAATTCCCACCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese Rotamase_3

Protein Analysis

286

Amino Acids

32.07

Weight (kDa)

8.65

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rotamase_3	PF13616	31 - 110	1.5e-16	PPIC-type PPIASE domain
Rotamase	PF00639	35 - 108	2.9e-14	PPIC-type PPIASE domain
Rhodanese	PF00581	135 - 218	6.6e-11	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19370
fragaria_vesca	FvH4_3g27810 FvH4_3g27810
malus_domestica	MD11G1184200.v1.1
prunus_persica	Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1 Prupe.4G263800_v2.0.a1
pyrus_communis	pycom12g08850
rosa_chinensis	RchiOBHm_Chr5g0050451
rosa_laevigata	RLG00000034703
rosa_multiflora	Rmu_sc0003202.1_g000006
rosa_roxburghii	Rroxscaffold_1G00030420
rosa_rugosa	Rorug05G0261100
rosa_samantha	Rh5AG332800 Rh5BG343000 Rh5CG370100 Rh5DG355600
rosa_wichuraiana	Rw5G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	406
AccB1I	GGYRCC	1 cut(s)	406
AccIII	TCCGGA	1 cut(s)	635
AclWI	GGATC	2 cut(s)	557, 695
AcsI	RAATTY	5 cut(s)	303, 413, 470, 695, 810
AcuI	CTGAAG	2 cut(s)	278, 630
AdeI	CACNNNGTG	1 cut(s)	314
AfaI	GTAC	4 cut(s)	344, 408, 495, 519
AflII	CTTAAG	1 cut(s)	275
AgsI	TTSAA	6 cut(s)	71, 127, 524, 533, 784, 796
AjnI	CCWGG	1 cut(s)	642
AloI	GAACNNNNNNTCC	2 cut(s)	630, 662
AluBI	AGCT	8 cut(s)	95, 182, 197, 219, 280, 544, 626, 672
AluI	AGCT	8 cut(s)	95, 182, 197, 219, 280, 544, 626, 672
Alw26I	GTCTC	2 cut(s)	116, 416
AlwI	GGATC	2 cut(s)	557, 695
Aor13HI	TCCGGA	1 cut(s)	635
AoxI	GGCC	1 cut(s)	618
ApeKI	GCWGC	4 cut(s)	92, 280, 335, 544
ApoI	RAATTY	5 cut(s)	303, 413, 470, 695, 810
Asp718I	GGTACC	1 cut(s)	406
AspS9I	GGNCC	3 cut(s)	244, 619, 677
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	4 cut(s)	236, 326, 400, 722
AvaII	GGWCC	2 cut(s)	244, 677
BaeGI	GKGCMC	1 cut(s)	176
BaeI	ACNNNNGTAYC	2 cut(s)	705, 738
BanI	GGYRCC	1 cut(s)	406
BauI	CACGAG	1 cut(s)	309
BbsI	GAAGAC	3 cut(s)	273, 324, 784
BbvI	GCAGC	4 cut(s)	104, 267, 322, 531
BccI	CCATC	2 cut(s)	364, 471
BcgI	CGANNNNNNTGC	2 cut(s)	327, 361
BciT130I	CCWGG	1 cut(s)	644
BciVI	GTATCC	1 cut(s)	706
BclI	TGATCA	1 cut(s)	835
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	2 cut(s)	116, 416
BfmI	CTRYAG	3 cut(s)	90, 336, 749
BfrI	CTTAAG	1 cut(s)	275
BfuI	GTATCC	1 cut(s)	706
BglII	AGATCT	1 cut(s)	289
BisI	GCNGC	4 cut(s)	93, 281, 336, 545
BlsI	GCNGC	4 cut(s)	94, 282, 337, 546
BmcAI	AGTACT	2 cut(s)	344, 495
Bme1390I	CCNGG	2 cut(s)	152, 644
Bme18I	GGWCC	2 cut(s)	244, 677
BmgT120I	GGNCC	3 cut(s)	244, 619, 677
BmiI	GGNNCC	2 cut(s)	408, 678
BmrFI	CCNGG	2 cut(s)	152, 644
BmrI	ACTGGG	1 cut(s)	754
BmsI	GCATC	2 cut(s)	217, 446
BmuI	ACTGGG	1 cut(s)	754
BpiI	GAAGAC	3 cut(s)	273, 324, 784
BplI	GAGNNNNNCTC	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	162
BpuMI	CCSGG	1 cut(s)	152
BsaJI	CCNNGG	1 cut(s)	733
BsaWI	WCCGGW	1 cut(s)	635
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bse1I	ACTGG	1 cut(s)	760
BseAI	TCCGGA	1 cut(s)	635
BseBI	CCWGG	1 cut(s)	644
BseDI	CCNNGG	1 cut(s)	733
BseGI	GGATG	2 cut(s)	356, 482
BseNI	ACTGG	1 cut(s)	760
BseRI	GAGGAG	1 cut(s)	434
BseSI	GKGCMC	1 cut(s)	176
BseXI	GCAGC	4 cut(s)	104, 267, 322, 531
BseYI	CCCAGC	2 cut(s)	672, 803
BshFI	GGCC	1 cut(s)	620
BshNI	GGYRCC	1 cut(s)	406
BsiSI	CCGG	2 cut(s)	151, 636
BslFI	GGGAC	1 cut(s)	690
BsmAI	GTCTC	2 cut(s)	116, 416
BsmBI	CGTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	690
BsmI	GAATGC	1 cut(s)	381
BsnI	GGCC	1 cut(s)	620
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp13I	TCCGGA	1 cut(s)	635
Bsp143I	GATC	6 cut(s)	289, 328, 562, 700, 743, 835
Bsp19I	CCATGG	1 cut(s)	733
BspANI	GGCC	1 cut(s)	620
BspEI	TCCGGA	1 cut(s)	635
BspHI	TCATGA	1 cut(s)	814
BspLI	GGNNCC	2 cut(s)	408, 678
BspMAI	CTGCAG	2 cut(s)	94, 340
BspPI	GGATC	2 cut(s)	557, 695
BspT107I	GGYRCC	1 cut(s)	406
BspTI	CTTAAG	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	760
BssECI	CCNNGG	1 cut(s)	733
BssMI	GATC	6 cut(s)	289, 328, 562, 700, 743, 835
BssSI	CACGAG	1 cut(s)	309
BssT1I	CCWWGG	1 cut(s)	733
Bst2BI	CACGAG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	644
Bst4CI	ACNGT	3 cut(s)	498, 588, 832
Bst6I	CTCTTC	1 cut(s)	360
BstAFI	CTTAAG	1 cut(s)	275
BstAPI	GCANNNNNTGC	2 cut(s)	434, 487
BstC8I	GCNNGC	1 cut(s)	740
BstDEI	CTNAG	3 cut(s)	20, 323, 574
BstDSI	CCRYGG	1 cut(s)	733
BstF5I	GGATG	2 cut(s)	356, 482
BstKTI	GATC	6 cut(s)	292, 331, 565, 703, 746, 838
BstMAI	GTCTC	2 cut(s)	116, 416
BstMBI	GATC	6 cut(s)	289, 328, 562, 700, 743, 835
BstMWI	GCNNNNNNNGC	2 cut(s)	434, 487
BstNI	CCWGG	1 cut(s)	644
BstNSI	RCATGY	2 cut(s)	551, 742
BstSCI	CCNGG	2 cut(s)	150, 642
BstSFI	CTRYAG	3 cut(s)	90, 336, 749
BstSLI	GKGCMC	1 cut(s)	176
BstV1I	GCAGC	4 cut(s)	104, 267, 322, 531
BstV2I	GAAGAC	3 cut(s)	273, 324, 784
BstX2I	RGATCY	2 cut(s)	289, 562
BstYI	RGATCY	2 cut(s)	289, 562
BsuI	GTATCC	1 cut(s)	706
BsuRI	GGCC	1 cut(s)	620
BtgI	CCRYGG	1 cut(s)	733
BtsCI	GGATG	2 cut(s)	356, 482
BtsIMutI	CAGTG	1 cut(s)	767
Cac8I	GCNNGC	1 cut(s)	740
CciI	TCATGA	1 cut(s)	814
Cfr13I	GGNCC	3 cut(s)	244, 619, 677
CseI	GACGC	1 cut(s)	781
Csp6I	GTAC	4 cut(s)	343, 407, 494, 518
CviAII	CATG	5 cut(s)	169, 548, 734, 739, 815
CviJI	RGCY	9 cut(s)	95, 182, 197, 219, 280, 544, 620, 626, 672
CviKI_1	RGCY	9 cut(s)	95, 182, 197, 219, 280, 544, 620, 626, 672
CviQI	GTAC	4 cut(s)	343, 407, 494, 518
DdeI	CTNAG	3 cut(s)	20, 323, 574
DpnI	GATC	6 cut(s)	291, 330, 564, 702, 745, 837
DpnII	GATC	6 cut(s)	289, 328, 562, 700, 743, 835
DraI	TTTAAA	1 cut(s)	444
DraIII	CACNNNGTG	1 cut(s)	314
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	733
Eco32I	GATATC	1 cut(s)	12
Eco47I	GGWCC	2 cut(s)	244, 677
Eco57I	CTGAAG	2 cut(s)	278, 630
EcoO109I	RGGNCCY	1 cut(s)	677
EcoRI	GAATTC	1 cut(s)	810
EcoRII	CCWGG	1 cut(s)	642
EcoRV	GATATC	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	733
ErhI	CCWWGG	1 cut(s)	733
Esp3I	CGTCTC	1 cut(s)	116
FaeI	CATG	5 cut(s)	172, 551, 737, 742, 818
FalI	AAGNNNNNCTT	4 cut(s)	258, 290, 776, 808
FaqI	GGGAC	1 cut(s)	690
FatI	CATG	5 cut(s)	168, 547, 733, 738, 814
FauNDI	CATATG	1 cut(s)	718
FbaI	TGATCA	1 cut(s)	835
Fnu4HI	GCNGC	4 cut(s)	93, 281, 336, 545
FokI	GGATG	2 cut(s)	343, 489
Fsp4HI	GCNGC	4 cut(s)	93, 281, 336, 545
GluI	GCNGC	4 cut(s)	93, 281, 336, 545
GsaI	CCCAGC	2 cut(s)	676, 807
GsuI	CTGGAG	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	620
HapII	CCGG	2 cut(s)	151, 636
HgaI	GACGC	1 cut(s)	781
Hin1II	CATG	5 cut(s)	172, 551, 737, 742, 818
HindIII	AAGCTT	1 cut(s)	624
HinfI	GANTC	4 cut(s)	24, 512, 639, 789
HpaII	CCGG	2 cut(s)	151, 636
HphI	GGTGA	4 cut(s)	236, 326, 400, 722
Hpy188I	TCNGA	4 cut(s)	211, 502, 567, 602
Hpy188III	TCNNGA	5 cut(s)	52, 309, 636, 784, 815
HpyAV	CCTTC	3 cut(s)	77, 133, 665
HpyCH4III	ACNGT	3 cut(s)	498, 588, 832
HpyF10VI	GCNNNNNNNGC	2 cut(s)	434, 487
HpyF3I	CTNAG	3 cut(s)	20, 323, 574
Hsp92II	CATG	5 cut(s)	172, 551, 737, 742, 818
Kpn2I	TCCGGA	1 cut(s)	635
KpnI	GGTACC	1 cut(s)	410
Ksp22I	TGATCA	1 cut(s)	835
Kzo9I	GATC	6 cut(s)	289, 328, 562, 700, 743, 835
LmnI	GCTCC	2 cut(s)	187, 541
Lsp1109I	GCAGC	4 cut(s)	104, 267, 322, 531
LweI	GCATC	2 cut(s)	217, 446
MaeIII	GTNAC	1 cut(s)	728
MalI	GATC	6 cut(s)	291, 330, 564, 702, 745, 837
MboI	GATC	6 cut(s)	289, 328, 562, 700, 743, 835
MboII	GAAGA	9 cut(s)	149, 152, 278, 284, 329, 377, 623, 641, 784
MflI	RGATCY	2 cut(s)	289, 562
MhlI	GDGCHC	1 cut(s)	176
MluCI	AATT	8 cut(s)	142, 303, 413, 470, 662, 695, 810, 843
MlyI	GAGTC	2 cut(s)	18, 798
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	7 cut(s)	59, 305, 361, 412, 498, 502, 714
MroI	TCCGGA	1 cut(s)	635
MseI	TTAA	3 cut(s)	62, 276, 443
MspCI	CTTAAG	1 cut(s)	275
MspI	CCGG	2 cut(s)	151, 636
MspR9I	CCNGG	2 cut(s)	152, 644
Mva1269I	GAATGC	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	644
MwoI	GCNNNNNNNGC	2 cut(s)	434, 487
NciI	CCSGG	1 cut(s)	152
NcoI	CCATGG	1 cut(s)	733
NdeI	CATATG	1 cut(s)	718
NdeII	GATC	6 cut(s)	289, 328, 562, 700, 743, 835
NlaIII	CATG	5 cut(s)	172, 551, 737, 742, 818
NlaIV	GGNNCC	2 cut(s)	408, 678
NmuCI	GTSAC	1 cut(s)	728
NspI	RCATGY	2 cut(s)	551, 742
PaeI	GCATGC	1 cut(s)	742
PagI	TCATGA	1 cut(s)	814
PctI	GAATGC	1 cut(s)	381
PfeI	GAWTC	2 cut(s)	512, 639
PkrI	GCNGC	4 cut(s)	94, 282, 337, 546
PleI	GAGTC	2 cut(s)	18, 797
PpsI	GAGTC	2 cut(s)	18, 797
PpuMI	RGGWCCY	1 cut(s)	677
Psp5II	RGGWCCY	1 cut(s)	677
Psp6I	CCWGG	1 cut(s)	642
PspFI	CCCAGC	2 cut(s)	672, 803
PspGI	CCWGG	1 cut(s)	642
PspN4I	GGNNCC	2 cut(s)	408, 678
PspPI	GGNCC	3 cut(s)	244, 619, 677
PspPPI	RGGWCCY	1 cut(s)	677
PstI	CTGCAG	2 cut(s)	94, 340
PsuI	RGATCY	2 cut(s)	289, 562
RsaI	GTAC	4 cut(s)	344, 408, 495, 519
RsaNI	GTAC	4 cut(s)	343, 407, 494, 518
SaqAI	TTAA	3 cut(s)	62, 276, 443
SatI	GCNGC	4 cut(s)	93, 281, 336, 545
Sau3AI	GATC	6 cut(s)	289, 328, 562, 700, 743, 835
Sau96I	GGNCC	3 cut(s)	244, 619, 677
ScaI	AGTACT	2 cut(s)	344, 495
SchI	GAGTC	2 cut(s)	18, 798
ScrFI	CCNGG	2 cut(s)	152, 644
SduI	GDGCHC	1 cut(s)	176
SfaNI	GCATC	2 cut(s)	217, 446
SfcI	CTRYAG	3 cut(s)	90, 336, 749
SinI	GGWCC	2 cut(s)	244, 677
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
SphI	GCATGC	1 cut(s)	742
Sse9I	AATT	8 cut(s)	142, 303, 413, 470, 662, 695, 810, 843
StyD4I	CCNGG	2 cut(s)	150, 642
StyI	CCWWGG	1 cut(s)	733
TaaI	ACNGT	3 cut(s)	498, 588, 832
TaqI	TCGA	5 cut(s)	53, 347, 658, 699, 826
TasI	AATT	8 cut(s)	142, 303, 413, 470, 662, 695, 810, 843
TatI	WGTACW	3 cut(s)	342, 493, 517
TfiI	GAWTC	2 cut(s)	512, 639
Tru1I	TTAA	3 cut(s)	62, 276, 443
Tru9I	TTAA	3 cut(s)	62, 276, 443
TscAI	CASTG	1 cut(s)	767
TseFI	GTSAC	1 cut(s)	728
TseI	GCWGC	4 cut(s)	92, 280, 335, 544
Tsp45I	GTSAC	1 cut(s)	728
TspDTI	ATGAA	3 cut(s)	189, 803, 831
TspRI	CASTG	1 cut(s)	767
Vha464I	CTTAAG	1 cut(s)	275
VpaK11BI	GGWCC	2 cut(s)	244, 677
XapI	RAATTY	5 cut(s)	303, 413, 470, 695, 810
XceI	RCATGY	2 cut(s)	551, 742
ZrmI	AGTACT	2 cut(s)	344, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.