AT5G19540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010264
Physical Location & Seq
Forward (+)
6593642 .. 6597916
4275 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G19540.2

Sequence Viewer

Length: 1389 bp
ATGGCGGTGAGCTCATTCGCCGTCCTTCCTCCATTTGGTTCCTCATACAGCTCCACAACCGATAGATCTTCTTCTTCTTCGTTTTACTCATCTTCGAAACTTCTCCGCATATCTCAATACCGGTTCCAGTCAAATTCCCGTTGTCCAAATGTGTTCGTCTCGTGCTCACTGAATCAGCCTTCTGATGATGCTTCCGACGCCGCCCTTTTTCTCGAATCCAATTCAATTGCTGATTACATGCGGTTCAAACGCCGTCCCGACCCCGGAAATGGTACCAGCGAGTTGCAGACTGCAATCGTGAGTTACAAGAAACGTTTCCCTTGGATTCTTCTCAACCCTTTTCTTCAGGTGGATTTGGTCTCAACTATTCATATTGCAGATAAAGAGTACTTCACAACTCTTCAGAAGGAGCTTGAACCATATGATTCTATCTTGTATGAGATGGTGGCTAGTAAAGAGACCTTGGAAAACAGGAGAAACCCTATTGCATCTAAGAGGCTCAAGAGTTCTCGTTCAAGAGGTTTCAGTATTCTTGGGTTCATTCAGCGGCAGATGGCAAGAGTACTAACACTTGATTTTCAGCTAGATTGTCTAGATTACGATACTGAGAATTGGTACCATGCTGATCTCGATTTCGAGACATTCCAGTTGCTTCAGAAGGAGAAAGGAGAAAGCTTCTTCTCATTTGCCAGGGACATGACTATTAGATCAACAAAAGCAATGATACAGCCAGCTTTGGTAACTGAAGGTCGTGATACTTGGAGGTCAAAGCTTCTATGGGTTTCACGGGTTTTTCCTATGCCTCTTGTGGGTCTTTTCCTAATCGGGGCTTTTTGTGCTGACTTTGGAGATCAGACCTCAGACTATCCAGAATTAGAAGCACTTTCACGGCTTGACTTTGGAGCTGCTATGAAGGTTTTCCTTGCTAAGAGATTGACATCCGAGCTAACACTAGAGACATCAGATATAGAGGAAAAATCTGTCATCATTGGTGAGAGAAACCGAGCAGCTACGGAAGCTTTAAGAAGAGCAATAGAGCAAGGACACAAGAGAATTGGAATTCTATATGGCGGAGGCCACATGCCCGACCTGGGAAGACGACTGAGAGAAGAGTTTGATCTTGTTCCTTCAGAGGTAAGATGGGTAACAGCTTGGTCCATCAGAAATCCAACGGACTTGGAGACTAGTTCATATCCGATTCTGAGGAAAATGGCAGAGGCTTTGCGTTGGCCACTAAACCGGTACCAAACATTGGCATTGCTAATATTTTCATCTGTACTTGCACTGGATCTCTGCTTTTGGGAGCTCTTCTTTGGTTCGACAATTGACTGGGCTACCCAGATAGGTGCAGAGTTATACCAGTTTATAGATAATACAAAAATTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

462

Amino Acids

52.84

Weight (kDa)

5.99

Isoelectric Point (pI)

55.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19540 AT5G19540
fragaria_vesca FvH4_1g04721 FvH4_1g04721 FvH4_1g04721
malus_domestica MD02G1046200.v1.1 MD15G1184300.v1.1
prunus_persica Prupe.7G231800_v2.0.a1
pyrus_communis pycom02g03870 pycom15g16590
rosa_chinensis RchiOBHm_Chr2g0090331
rosa_laevigata RLG00000016099
rosa_multiflora Rmu_sc0006235.1_g000006
rosa_roxburghii Rroxscaffold_2G00151270
rosa_rugosa Rorug02G0006600 Rorug02G0006600
rosa_samantha Rh2AG052600 Rh2BG051200 Rh2CG053400 Rh2DG052500
rosa_wichuraiana Rw2G004430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 3 cut(s) 272, 615, 1242
AccB1I GGYRCC 3 cut(s) 272, 615, 1242
AccB7I CCANNNNNTGG 1 cut(s) 1252
AciI CCGC 6 cut(s) 5, 106, 201, 241, 547, 1071
AclI AACGTT 1 cut(s) 313
AclWI GGATC 1 cut(s) 1296
AcoI YGGCCR 1 cut(s) 1229
AcsI RAATTY 2 cut(s) 133, 1059
AcuI CTGAAG 5 cut(s) 329, 386, 638, 765, 1113
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 6 cut(s) 274, 389, 564, 617, 1244, 1278
AfiI CCNNNNNNNGG 7 cut(s) 35, 263, 269, 809, 826, 1091, 1252
AgeI ACCGGT 2 cut(s) 120, 1239
AgsI TTSAA 4 cut(s) 225, 247, 416, 516
AhlI ACTAGT 1 cut(s) 1184
AjnI CCWGG 2 cut(s) 689, 1089
Alw21I GWGCWC 3 cut(s) 14, 167, 1308
Alw26I GTCTC 6 cut(s) 163, 364, 452, 632, 950, 1175
AlwI GGATC 1 cut(s) 1296
AoxI GGCC 2 cut(s) 1075, 1229
ApeKI GCWGC 2 cut(s) 905, 1007
ApoI RAATTY 2 cut(s) 133, 1059
AsiGI ACCGGT 2 cut(s) 120, 1239
Asp700I GAANNNNTTC 2 cut(s) 314, 917
Asp718I GGTACC 3 cut(s) 272, 615, 1242
AspS9I GGNCC 1 cut(s) 1155
AsuC2I CCSGG 1 cut(s) 264
AsuHPI GGTGA 2 cut(s) 19, 1004
AsuII TTCGAA 1 cut(s) 95
AvaII GGWCC 1 cut(s) 1155
BalI TGGCCA 1 cut(s) 1231
BanI GGYRCC 3 cut(s) 272, 615, 1242
BanII GRGCYC 2 cut(s) 14, 1308
BauI CACGAG 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 1102
Bbv12I GWGCWC 3 cut(s) 14, 167, 1308
BbvI GCAGC 2 cut(s) 892, 1019
BccI CCATC 4 cut(s) 436, 547, 1134, 1166
BceAI ACGGC 3 cut(s) 5, 237, 905
BciT130I CCWGG 2 cut(s) 691, 1091
BcnI CCSGG 1 cut(s) 264
BcoDI GTCTC 6 cut(s) 163, 364, 452, 632, 950, 1175
BcuI ACTAGT 1 cut(s) 1184
BfaI CTAG 5 cut(s) 450, 584, 593, 953, 1185
BglII AGATCT 1 cut(s) 65
BisI GCNGC 4 cut(s) 201, 548, 906, 1008
BlsI GCNGC 4 cut(s) 202, 549, 907, 1009
BmcAI AGTACT 2 cut(s) 389, 564
Bme1390I CCNGG 3 cut(s) 264, 691, 1091
Bme18I GGWCC 1 cut(s) 1155
BmgT120I GGNCC 1 cut(s) 1155
BmiI GGNNCC 5 cut(s) 40, 125, 274, 617, 1244
BmrFI CCNGG 3 cut(s) 264, 691, 1091
BmrI ACTGGG 1 cut(s) 1339
BmsI GCATC 2 cut(s) 178, 497
BmuI ACTGGG 1 cut(s) 1339
BpiI GAAGAC 1 cut(s) 1102
Bpu14I TTCGAA 1 cut(s) 95
BpuEI CTTGAG 1 cut(s) 485
BpuMI CCSGG 1 cut(s) 264
BsaBI GATNNNNATC 1 cut(s) 937
BsaHI GRCGYC 1 cut(s) 198
BsaI GGTCTC 2 cut(s) 364, 452
BsaJI CCNNGG 5 cut(s) 262, 320, 462, 690, 1090
BsaWI WCCGGW 2 cut(s) 120, 1239
Bsc4I CCNNNNNNNGG 7 cut(s) 35, 263, 269, 809, 826, 1091, 1252
Bse118I RCCGGY 2 cut(s) 120, 1239
Bse1I ACTGG 5 cut(s) 127, 646, 1290, 1334, 1360
Bse3DI GCAATG 2 cut(s) 726, 1256
Bse8I GATNNNNATC 1 cut(s) 937
BseBI CCWGG 2 cut(s) 691, 1091
BseDI CCNNGG 5 cut(s) 262, 320, 462, 690, 1090
BseGI GGATG 1 cut(s) 938
BseJI GATNNNNATC 1 cut(s) 937
BseLI CCNNNNNNNGG 7 cut(s) 35, 263, 269, 809, 826, 1091, 1252
BseMI GCAATG 2 cut(s) 726, 1256
BseMII CTCAG 4 cut(s) 597, 873, 1094, 1193
BseNI ACTGG 5 cut(s) 127, 646, 1290, 1334, 1360
BseXI GCAGC 2 cut(s) 892, 1019
BsgI GTGCAG 1 cut(s) 1368
BshFI GGCC 2 cut(s) 1077, 1231
BshNI GGYRCC 3 cut(s) 272, 615, 1242
BshTI ACCGGT 2 cut(s) 120, 1239
BsiHKAI GWGCWC 3 cut(s) 14, 167, 1308
BsiSI CCGG 3 cut(s) 121, 264, 1240
BslFI GGGAC 2 cut(s) 240, 707
BslI CCNNNNNNNGG 7 cut(s) 35, 263, 269, 809, 826, 1091, 1252
BsmAI GTCTC 6 cut(s) 163, 364, 452, 632, 950, 1175
BsmBI CGTCTC 1 cut(s) 163
BsmFI GGGAC 2 cut(s) 240, 707
BsnI GGCC 2 cut(s) 1077, 1231
Bso31I GGTCTC 2 cut(s) 364, 452
Bsp119I TTCGAA 1 cut(s) 95
Bsp1286I GDGCHC 3 cut(s) 14, 167, 1308
Bsp143I GATC 6 cut(s) 65, 625, 707, 850, 1117, 1288
BspACI CCGC 6 cut(s) 5, 106, 201, 241, 547, 1071
BspANI GGCC 2 cut(s) 1077, 1231
BspCNI CTCAG 4 cut(s) 598, 872, 1095, 1194
BspLI GGNNCC 5 cut(s) 40, 125, 274, 617, 1244
BspPI GGATC 1 cut(s) 1296
BspQI GCTCTTC 2 cut(s) 1021, 1313
BspT104I TTCGAA 1 cut(s) 95
BspT107I GGYRCC 3 cut(s) 272, 615, 1242
BspTNI GGTCTC 2 cut(s) 364, 452
BsrDI GCAATG 2 cut(s) 726, 1256
BsrFI RCCGGY 2 cut(s) 120, 1239
BsrI ACTGG 5 cut(s) 127, 646, 1290, 1334, 1360
BssAI RCCGGY 2 cut(s) 120, 1239
BssECI CCNNGG 5 cut(s) 262, 320, 462, 690, 1090
BssMI GATC 6 cut(s) 65, 625, 707, 850, 1117, 1288
BssNI GRCGYC 1 cut(s) 198
BssSI CACGAG 1 cut(s) 160
BssT1I CCWWGG 2 cut(s) 320, 462
Bst2BI CACGAG 1 cut(s) 160
Bst2UI CCWGG 2 cut(s) 691, 1091
Bst6I CTCTTC 4 cut(s) 405, 1021, 1104, 1313
BstACI GRCGYC 1 cut(s) 198
BstBI TTCGAA 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 732
BstDEI CTNAG 6 cut(s) 492, 606, 859, 927, 1103, 1202
BstF5I GGATG 1 cut(s) 938
BstKTI GATC 6 cut(s) 68, 628, 710, 853, 1120, 1291
BstMAI GTCTC 6 cut(s) 163, 364, 452, 632, 950, 1175
BstMBI GATC 6 cut(s) 65, 625, 707, 850, 1117, 1288
BstMWI GCNNNNNNNGC 3 cut(s) 197, 836, 1016
BstNI CCWGG 2 cut(s) 691, 1091
BstNSI RCATGY 2 cut(s) 241, 1084
BstSCI CCNGG 3 cut(s) 262, 689, 1089
BstV1I GCAGC 2 cut(s) 892, 1019
BstV2I GAAGAC 1 cut(s) 1102
BstX2I RGATCY 2 cut(s) 65, 1288
BstYI RGATCY 2 cut(s) 65, 1288
BsuRI GGCC 2 cut(s) 1077, 1231
BtsCI GGATG 1 cut(s) 938
BtsIMutI CAGTG 2 cut(s) 167, 1283
Cac8I GCNNGC 1 cut(s) 732
Cfr10I RCCGGY 2 cut(s) 120, 1239
Cfr13I GGNCC 1 cut(s) 1155
CseI GACGC 1 cut(s) 206
Csp6I GTAC 6 cut(s) 273, 388, 563, 616, 1243, 1277
CspAI ACCGGT 2 cut(s) 120, 1239
CviAII CATG 4 cut(s) 238, 620, 697, 1081
CviQI GTAC 6 cut(s) 273, 388, 563, 616, 1243, 1277
DdeI CTNAG 6 cut(s) 492, 606, 859, 927, 1103, 1202
DpnI GATC 6 cut(s) 67, 627, 709, 852, 1119, 1290
DpnII GATC 6 cut(s) 65, 625, 707, 850, 1117, 1288
EaeI YGGCCR 1 cut(s) 1229
Eam1104I CTCTTC 4 cut(s) 405, 1021, 1104, 1313
EarI CTCTTC 4 cut(s) 405, 1021, 1104, 1313
EciI GGCGGA 1 cut(s) 1086
Ecl136II GAGCTC 2 cut(s) 12, 1306
Eco130I CCWWGG 2 cut(s) 320, 462
Eco24I GRGCYC 2 cut(s) 14, 1308
Eco31I GGTCTC 2 cut(s) 364, 452
Eco47I GGWCC 1 cut(s) 1155
Eco53kI GAGCTC 2 cut(s) 12, 1306
Eco57I CTGAAG 5 cut(s) 329, 386, 638, 765, 1113
EcoICRI GAGCTC 2 cut(s) 12, 1306
EcoRI GAATTC 1 cut(s) 1059
EcoRII CCWGG 2 cut(s) 689, 1089
EcoT14I CCWWGG 2 cut(s) 320, 462
EcoT38I GRGCYC 2 cut(s) 14, 1308
ErhI CCWWGG 2 cut(s) 320, 462
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 4 cut(s) 241, 623, 700, 1084
FaqI GGGAC 2 cut(s) 240, 707
FatI CATG 4 cut(s) 237, 619, 696, 1080
FauNDI CATATG 1 cut(s) 421
Fnu4HI GCNGC 4 cut(s) 201, 548, 906, 1008
FokI GGATG 1 cut(s) 925
FriOI GRGCYC 2 cut(s) 14, 1308
Fsp4HI GCNGC 4 cut(s) 201, 548, 906, 1008
FspBI CTAG 5 cut(s) 450, 584, 593, 953, 1185
GluI GCNGC 4 cut(s) 201, 548, 906, 1008
HaeIII GGCC 2 cut(s) 1077, 1231
HapII CCGG 3 cut(s) 121, 264, 1240
HgaI GACGC 1 cut(s) 206
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 4 cut(s) 241, 623, 700, 1084
HindIII AAGCTT 3 cut(s) 673, 770, 1017
HinfI GANTC 5 cut(s) 172, 215, 325, 425, 1198
HpaII CCGG 3 cut(s) 121, 264, 1240
HphI GGTGA 2 cut(s) 19, 1004
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 7 cut(s) 35, 189, 400, 652, 740, 907, 1137
HpyCH4IV ACGT 1 cut(s) 313
HpyCH4V TGCA 6 cut(s) 286, 293, 377, 488, 1283, 1349
HpyF10VI GCNNNNNNNGC 3 cut(s) 197, 836, 1016
HpyF3I CTNAG 6 cut(s) 492, 606, 859, 927, 1103, 1202
HpySE526I ACGT 1 cut(s) 313
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 4 cut(s) 241, 623, 700, 1084
KpnI GGTACC 3 cut(s) 276, 619, 1246
Kzo9I GATC 6 cut(s) 65, 625, 707, 850, 1117, 1288
LguI GCTCTTC 2 cut(s) 1021, 1313
LmnI GCTCC 4 cut(s) 56, 409, 902, 1303
Lsp1109I GCAGC 2 cut(s) 892, 1019
LweI GCATC 2 cut(s) 178, 497
MaeI CTAG 5 cut(s) 450, 584, 593, 953, 1185
MaeII ACGT 1 cut(s) 313
MaeIII GTNAC 3 cut(s) 302, 739, 1144
MalI GATC 6 cut(s) 67, 627, 709, 852, 1119, 1290
MboI GATC 6 cut(s) 65, 625, 707, 850, 1117, 1288
MfeI CAATTG 2 cut(s) 225, 1323
MflI RGATCY 2 cut(s) 65, 1288
MhlI GDGCHC 3 cut(s) 14, 167, 1308
MlsI TGGCCA 1 cut(s) 1231
MluCI AATT 9 cut(s) 133, 220, 225, 610, 872, 1053, 1059, 1323, 1380
MluNI TGGCCA 1 cut(s) 1231
MmeI TCCRAC 2 cut(s) 219, 1193
Mox20I TGGCCA 1 cut(s) 1231
MroXI GAANNNNTTC 2 cut(s) 314, 917
MscI TGGCCA 1 cut(s) 1231
MseI TTAA 1 cut(s) 1022
Msp20I TGGCCA 1 cut(s) 1231
MspA1I CMGCKG 1 cut(s) 547
MspI CCGG 3 cut(s) 121, 264, 1240
MspR9I CCNGG 3 cut(s) 264, 691, 1091
MunI CAATTG 2 cut(s) 225, 1323
MvaI CCWGG 2 cut(s) 691, 1091
MwoI GCNNNNNNNGC 3 cut(s) 197, 836, 1016
NciI CCSGG 1 cut(s) 264
NdeI CATATG 1 cut(s) 421
NdeII GATC 6 cut(s) 65, 625, 707, 850, 1117, 1288
NlaIII CATG 4 cut(s) 241, 623, 700, 1084
NlaIV GGNNCC 5 cut(s) 40, 125, 274, 617, 1244
NspI RCATGY 2 cut(s) 241, 1084
NspV TTCGAA 1 cut(s) 95
PciSI GCTCTTC 2 cut(s) 1021, 1313
PdmI GAANNNNTTC 2 cut(s) 314, 917
PfeI GAWTC 5 cut(s) 172, 215, 325, 425, 1198
PflMI CCANNNNNTGG 1 cut(s) 1252
PinAI ACCGGT 2 cut(s) 120, 1239
PkrI GCNGC 4 cut(s) 202, 549, 907, 1009
Psp124BI GAGCTC 2 cut(s) 14, 1308
Psp1406I AACGTT 1 cut(s) 313
Psp6I CCWGG 2 cut(s) 689, 1089
PspGI CCWGG 2 cut(s) 689, 1089
PspN4I GGNNCC 5 cut(s) 40, 125, 274, 617, 1244
PspPI GGNCC 1 cut(s) 1155
PsuI RGATCY 2 cut(s) 65, 1288
RsaI GTAC 6 cut(s) 274, 389, 564, 617, 1244, 1278
RsaNI GTAC 6 cut(s) 273, 388, 563, 616, 1243, 1277
SacI GAGCTC 2 cut(s) 14, 1308
SapI GCTCTTC 2 cut(s) 1021, 1313
SaqAI TTAA 1 cut(s) 1022
SatI GCNGC 4 cut(s) 201, 548, 906, 1008
Sau3AI GATC 6 cut(s) 65, 625, 707, 850, 1117, 1288
Sau96I GGNCC 1 cut(s) 1155
ScaI AGTACT 2 cut(s) 389, 564
ScrFI CCNGG 3 cut(s) 264, 691, 1091
SduI GDGCHC 3 cut(s) 14, 167, 1308
SfaNI GCATC 2 cut(s) 178, 497
SfuI TTCGAA 1 cut(s) 95
SinI GGWCC 1 cut(s) 1155
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
SpeI ACTAGT 1 cut(s) 1184
Sse9I AATT 9 cut(s) 133, 220, 225, 610, 872, 1053, 1059, 1323, 1380
SsiI CCGC 6 cut(s) 5, 106, 201, 241, 547, 1071
SspI AATATT 1 cut(s) 1266
SspMI CTAG 5 cut(s) 450, 584, 593, 953, 1185
SstI GAGCTC 2 cut(s) 14, 1308
StyD4I CCNGG 3 cut(s) 262, 689, 1089
StyI CCWWGG 2 cut(s) 320, 462
TaiI ACGT 1 cut(s) 316
TaqI TCGA 5 cut(s) 95, 213, 630, 636, 1319
TasI AATT 9 cut(s) 133, 220, 225, 610, 872, 1053, 1059, 1323, 1380
TatI WGTACW 3 cut(s) 387, 562, 1276
TauI GCSGC 2 cut(s) 203, 550
TfiI GAWTC 5 cut(s) 172, 215, 325, 425, 1198
Tru1I TTAA 1 cut(s) 1022
Tru9I TTAA 1 cut(s) 1022
TscAI CASTG 2 cut(s) 174, 1290
TseI GCWGC 2 cut(s) 905, 1007
TspDTI ATGAA 5 cut(s) 359, 529, 926, 1179, 1260
TspGWI ACGGA 2 cut(s) 1028, 1187
TspRI CASTG 2 cut(s) 174, 1290
Van91I CCANNNNNTGG 1 cut(s) 1252
VpaK11BI GGWCC 1 cut(s) 1155
XapI RAATTY 2 cut(s) 133, 1059
XbaI TCTAGA 1 cut(s) 592
XceI RCATGY 2 cut(s) 241, 1084
XmnI GAANNNNTTC 2 cut(s) 314, 917
XspI CTAG 5 cut(s) 450, 584, 593, 953, 1185
ZrmI AGTACT 2 cut(s) 389, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.