Prupe.7G231800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0010264
Physical Location & Seq
Reverse (-)
20288164 .. 20291124
2961 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G231800.1

Sequence Viewer

Length: 1398 bp
ATGGTCTCAACTTCACTCTCAATTCTCTCATCTACATCCTCGTTTCCCTCCAATTCCAACGCTTACACCGATGCTTCTTCCACTTCTACAAGCCTTAAAGTCAGGCCCTTTGGATTATCCAAACGAAGCCTTAAATTTCCCAAAGCCTCAAAGCTAGCTCCTTTCAAGGTTTTTGGTTCTTCTTCAATCAACCCAATTGAGGATGGCTCGGCTGAGCAGTTTTTACGAAACAATTCGATTGCGGATTTCATGAGGTTCAAAAGGGGCGTTGATGGAGGCACTGGGGAGTTGCAAACTGCGGTTGTTAGCTACAAAAAGAGGTTCCCTTGGTCGCTTTTGAGGCCTTTTCTTCAGGTTGATTTGGTTTCGACAATTCACATCGCGGATAAAGAGTACTTTGAGACCCTGCAAAAGGAACTTGAGTCCTATGATTGTGTCCTTTATGAGATGGTAACAAGCAGGGAGAGTTTAGAGAACAGAAGAATCCTTGCTGCCACAAAAAGACTCAAAGTCAAAGGTTCACGCTCAAAAGGATTTAACATTCTGGGATGCATTCAGAGACAGATGGCTCGATTTCTGACGCTTGATTTCCAATTAGACTGTCTTGATTACGAGTCTGAGAATTGGTACCATGCAGACCTCGACTTCGAGACTTTCCAATTGCTTCAGCAAGAAAAAGGTGAAAGCTTCTTCACATTTGCAAGAGACATGACTGTTAGATCCACGAAAGCTATGATTCAAACTGCTACAATCCCAGAAGGCCTTGGTCCTTGGAGATCTAAGCTTAAGTGGGCTGCACGTGTGCTTCCTATGCCACTTGTCGGCCTTCTCATTATTGGAGGTGTCTGTGCAGACACGGGCAGTGAGGACTCGGAATTTCCAGAATTTGAAGCCTTGTCTAGGCTTGATTTTGGTGCAGCAATGAAGGTCTTCTTGGCAAAGAGGCTTACATCCGAATTCACGCAGGCTACGGCTGATGTAGAAGAGAGCTCTGTGATTATTGGTGAGAGAAACAGAGCCGCCATGGATGCACTCAGAAAAGCAATCGACGGTGGAAATAACAGGATTGCAATACTATACGGAGGGGGTCACATGCCGGATCTCGGGAGGCGATTACAAGAGCTGGAGCTGATCCCTACTCAGGCGCAGTGGATATCTGCGTGGTCCATAAGAAAGCAGGATTTGAATAGCAGTTCCCTTCCATTTCTGAAGAAAATGGCTGAAGTATCAGGTTGGCCTTTGAACCGCTACCAGACTTTGGCGTTGCTCATATTTTCCTCGGTGCTTGCATTGGATCTCTGGTTTTGGGAGCTCTTTTTTGGCACTGCTGTGAACTGGTCCTATCAACTTGCTTCACAGGTTTCTGAATATATTGATAACTCAGGGATGAGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

466

Amino Acids

52.23

Weight (kDa)

7.6

Isoelectric Point (pI)

47.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19540 AT5G19540
fragaria_vesca FvH4_1g04721 FvH4_1g04721 FvH4_1g04721
malus_domestica MD02G1046200.v1.1 MD15G1184300.v1.1
prunus_persica Prupe.7G231800_v2.0.a1
pyrus_communis pycom02g03870 pycom15g16590
rosa_chinensis RchiOBHm_Chr2g0090331
rosa_laevigata RLG00000016099
rosa_multiflora Rmu_sc0006235.1_g000006
rosa_roxburghii Rroxscaffold_2G00151270
rosa_rugosa Rorug02G0006600 Rorug02G0006600
rosa_samantha Rh2AG052600 Rh2BG051200 Rh2CG053400 Rh2DG052500
rosa_wichuraiana Rw2G004430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 627
AccB1I GGYRCC 1 cut(s) 627
AccB7I CCANNNNNTGG 1 cut(s) 1258
AccII CGCG 1 cut(s) 383
AciI CCGC 5 cut(s) 242, 299, 383, 1020, 1246
AclWI GGATC 4 cut(s) 714, 1107, 1126, 1302
AcsI RAATTY 4 cut(s) 134, 875, 884, 956
AcuI CTGAAG 4 cut(s) 335, 650, 1229, 1242
AcvI CACGTG 1 cut(s) 800
AfaI GTAC 2 cut(s) 395, 629
AfiI CCNNNNNNNGG 7 cut(s) 199, 412, 821, 900, 1103, 1141, 1258
AflII CTTAAG 1 cut(s) 785
AflIII ACRYGT 1 cut(s) 799
AgsI TTSAA 7 cut(s) 166, 186, 259, 740, 890, 1186, 1243
AhdI GACNNNNNGTC 1 cut(s) 509
AjuI GAANNNNNNNTTGG 2 cut(s) 917, 949
AleI CACNNNNGTG 1 cut(s) 1328
Alw21I GWGCWC 2 cut(s) 992, 1314
Alw26I GTCTC 5 cut(s) 10, 395, 553, 644, 699
AlwI GGATC 4 cut(s) 714, 1107, 1126, 1302
Ama87I CYCGRG 1 cut(s) 1103
AoxI GGCC 5 cut(s) 104, 341, 760, 823, 1235
ApeKI GCWGC 3 cut(s) 491, 794, 917
ApoI RAATTY 4 cut(s) 134, 875, 884, 956
ArsI GACNNNNNNTTYG 2 cut(s) 629, 661
Asp700I GAANNNNTTC 2 cut(s) 232, 929
Asp718I GGTACC 1 cut(s) 627
AspLEI GCGC 1 cut(s) 1147
AspS9I GGNCC 4 cut(s) 105, 767, 1164, 1338
AsuHPI GGTGA 2 cut(s) 692, 1016
AsuNHI GCTAGC 1 cut(s) 154
AvaI CYCGRG 1 cut(s) 1103
AvaII GGWCC 3 cut(s) 767, 1164, 1338
BanI GGYRCC 1 cut(s) 627
BanII GRGCYC 2 cut(s) 992, 1314
BbrPI CACGTG 1 cut(s) 800
BbsI GAAGAC 1 cut(s) 922
Bbv12I GWGCWC 2 cut(s) 992, 1314
BbvI GCAGC 3 cut(s) 478, 781, 929
BccI CCATC 4 cut(s) 197, 266, 442, 559
BceAI ACGGC 1 cut(s) 987
BcoDI GTCTC 5 cut(s) 10, 395, 553, 644, 699
BfaI CTAG 2 cut(s) 155, 900
BfrI CTTAAG 1 cut(s) 785
BglII AGATCT 1 cut(s) 776
BisI GCNGC 4 cut(s) 492, 795, 918, 1020
BlpI GCTNAGC 1 cut(s) 213
BlsI GCNGC 4 cut(s) 493, 796, 919, 1021
BmcAI AGTACT 1 cut(s) 395
Bme18I GGWCC 3 cut(s) 767, 1164, 1338
BmeRI GACNNNNNGTC 1 cut(s) 509
BmeT110I CYCGRG 1 cut(s) 1103
BmgT120I GGNCC 4 cut(s) 105, 767, 1164, 1338
BmiI GGNNCC 2 cut(s) 323, 629
BmrI ACTGGG 1 cut(s) 291
BmsI GCATC 3 cut(s) 61, 539, 1018
BmtI GCTAGC 1 cut(s) 158
BmuI ACTGGG 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 922
BplI GAGNNNNNCTC 2 cut(s) 191, 223
BpmI CTGGAG 1 cut(s) 1145
Bpu1102I GCTNAGC 1 cut(s) 213
BpuEI CTTGAG 1 cut(s) 440
BsaAI YACGTR 1 cut(s) 800
BsaI GGTCTC 2 cut(s) 10, 395
BsaJI CCNNGG 5 cut(s) 326, 763, 770, 1023, 1278
Bsc4I CCNNNNNNNGG 7 cut(s) 199, 412, 821, 900, 1103, 1141, 1258
Bse1I ACTGG 2 cut(s) 286, 1340
Bse3DI GCAATG 1 cut(s) 927
BseDI CCNNGG 5 cut(s) 326, 763, 770, 1023, 1278
BseGI GGATG 6 cut(s) 35, 208, 554, 950, 1033, 1392
BseLI CCNNNNNNNGG 7 cut(s) 199, 412, 821, 900, 1103, 1141, 1258
BseMI GCAATG 1 cut(s) 927
BseMII CTCAG 5 cut(s) 204, 609, 1048, 1154, 1395
BseNI ACTGG 2 cut(s) 286, 1340
BseXI GCAGC 3 cut(s) 478, 781, 929
BsgI GTGCAG 3 cut(s) 780, 870, 936
Bsh1236I CGCG 1 cut(s) 383
BshFI GGCC 5 cut(s) 106, 343, 762, 825, 1237
BshNI GGYRCC 1 cut(s) 627
BsiHKAI GWGCWC 2 cut(s) 992, 1314
BsiHKCI CYCGRG 1 cut(s) 1103
BsiSI CCGG 1 cut(s) 1097
BslI CCNNNNNNNGG 7 cut(s) 199, 412, 821, 900, 1103, 1141, 1258
BsmAI GTCTC 5 cut(s) 10, 395, 553, 644, 699
BsmI GAATGC 1 cut(s) 552
BsnI GGCC 5 cut(s) 106, 343, 762, 825, 1237
Bso31I GGTCTC 2 cut(s) 10, 395
BsoBI CYCGRG 1 cut(s) 1103
Bsp1286I GDGCHC 2 cut(s) 992, 1314
Bsp143I GATC 5 cut(s) 719, 776, 1099, 1131, 1294
Bsp1720I GCTNAGC 1 cut(s) 213
Bsp19I CCATGG 1 cut(s) 1023
BspACI CCGC 5 cut(s) 242, 299, 383, 1020, 1246
BspANI GGCC 5 cut(s) 106, 343, 762, 825, 1237
BspCNI CTCAG 5 cut(s) 205, 610, 1047, 1153, 1394
BspFNI CGCG 1 cut(s) 383
BspHI TCATGA 1 cut(s) 249
BspLI GGNNCC 2 cut(s) 323, 629
BspOI GCTAGC 1 cut(s) 158
BspPI GGATC 4 cut(s) 714, 1107, 1126, 1302
BspT107I GGYRCC 1 cut(s) 627
BspTI CTTAAG 1 cut(s) 785
BspTNI GGTCTC 2 cut(s) 10, 395
BsrDI GCAATG 1 cut(s) 927
BsrI ACTGG 2 cut(s) 286, 1340
BssECI CCNNGG 5 cut(s) 326, 763, 770, 1023, 1278
BssMI GATC 5 cut(s) 719, 776, 1099, 1131, 1294
BssT1I CCWWGG 4 cut(s) 326, 763, 770, 1023
Bst4CI ACNGT 3 cut(s) 602, 715, 1052
Bst6I CTCTTC 1 cut(s) 978
BstAFI CTTAAG 1 cut(s) 785
BstBAI YACGTR 1 cut(s) 800
BstC8I GCNNGC 3 cut(s) 156, 966, 1287
BstDEI CTNAG 6 cut(s) 213, 618, 780, 1034, 1140, 1381
BstDSI CCRYGG 1 cut(s) 1023
BstENI CCTNNNNNAGG 2 cut(s) 410, 898
BstF5I GGATG 6 cut(s) 35, 208, 554, 950, 1033, 1392
BstFNI CGCG 1 cut(s) 383
BstHHI GCGC 1 cut(s) 1147
BstKTI GATC 5 cut(s) 722, 779, 1102, 1134, 1297
BstMAI GTCTC 5 cut(s) 10, 395, 553, 644, 699
BstMBI GATC 5 cut(s) 719, 776, 1099, 1131, 1294
BstMWI GCNNNNNNNGC 3 cut(s) 340, 811, 1028
BstNSI RCATGY 1 cut(s) 1096
BstUI CGCG 1 cut(s) 383
BstV1I GCAGC 3 cut(s) 478, 781, 929
BstV2I GAAGAC 1 cut(s) 922
BstX2I RGATCY 4 cut(s) 719, 776, 1099, 1294
BstYI RGATCY 4 cut(s) 719, 776, 1099, 1294
BsuRI GGCC 5 cut(s) 106, 343, 762, 825, 1237
BtgI CCRYGG 1 cut(s) 1023
BtgZI GCGATG 1 cut(s) 364
BtsCI GGATG 6 cut(s) 35, 208, 554, 950, 1033, 1392
BtsI GCAGTG 3 cut(s) 868, 1154, 1323
BtsIMutI CAGTG 4 cut(s) 279, 868, 1154, 1323
Cac8I GCNNGC 3 cut(s) 156, 966, 1287
CciI TCATGA 1 cut(s) 249
CfoI GCGC 1 cut(s) 1147
Cfr13I GGNCC 4 cut(s) 105, 767, 1164, 1338
CseI GACGC 1 cut(s) 589
Csp6I GTAC 2 cut(s) 394, 628
CviAII CATG 5 cut(s) 250, 632, 709, 1024, 1093
CviQI GTAC 2 cut(s) 394, 628
DdeI CTNAG 6 cut(s) 213, 618, 780, 1034, 1140, 1381
DpnI GATC 5 cut(s) 721, 778, 1101, 1133, 1296
DpnII GATC 5 cut(s) 719, 776, 1099, 1131, 1294
DriI GACNNNNNGTC 1 cut(s) 509
Eam1104I CTCTTC 1 cut(s) 978
Eam1105I GACNNNNNGTC 1 cut(s) 509
EarI CTCTTC 1 cut(s) 978
Ecl136II GAGCTC 2 cut(s) 990, 1312
Eco130I CCWWGG 4 cut(s) 326, 763, 770, 1023
Eco147I AGGCCT 2 cut(s) 343, 762
Eco24I GRGCYC 2 cut(s) 992, 1314
Eco31I GGTCTC 2 cut(s) 10, 395
Eco32I GATATC 1 cut(s) 1155
Eco47I GGWCC 3 cut(s) 767, 1164, 1338
Eco53kI GAGCTC 2 cut(s) 990, 1312
Eco57I CTGAAG 4 cut(s) 335, 650, 1229, 1242
Eco72I CACGTG 1 cut(s) 800
Eco88I CYCGRG 1 cut(s) 1103
EcoICRI GAGCTC 2 cut(s) 990, 1312
EcoNI CCTNNNNNAGG 2 cut(s) 410, 898
EcoO109I RGGNCCY 1 cut(s) 105
EcoRI GAATTC 1 cut(s) 956
EcoRV GATATC 1 cut(s) 1155
EcoT14I CCWWGG 4 cut(s) 326, 763, 770, 1023
EcoT22I ATGCAT 1 cut(s) 554
EcoT38I GRGCYC 2 cut(s) 992, 1314
ErhI CCWWGG 4 cut(s) 326, 763, 770, 1023
FaeI CATG 5 cut(s) 253, 635, 712, 1027, 1096
FalI AAGNNNNNCTT 2 cut(s) 917, 949
FatI CATG 5 cut(s) 249, 631, 708, 1023, 1092
Fnu4HI GCNGC 4 cut(s) 492, 795, 918, 1020
FokI GGATG 5 cut(s) 22, 215, 561, 937, 1040
FriOI GRGCYC 2 cut(s) 992, 1314
Fsp4HI GCNGC 4 cut(s) 492, 795, 918, 1020
FspBI CTAG 2 cut(s) 155, 900
GlaI GCGC 1 cut(s) 1146
GluI GCNGC 4 cut(s) 492, 795, 918, 1020
GsuI CTGGAG 1 cut(s) 1145
HaeIII GGCC 5 cut(s) 106, 343, 762, 825, 1237
HapII CCGG 1 cut(s) 1097
HgaI GACGC 1 cut(s) 589
HhaI GCGC 1 cut(s) 1147
Hin1II CATG 5 cut(s) 253, 635, 712, 1027, 1096
Hin6I GCGC 1 cut(s) 1145
HinP1I GCGC 1 cut(s) 1145
HindIII AAGCTT 2 cut(s) 685, 782
HinfI GANTC 6 cut(s) 422, 483, 504, 614, 736, 869
HpaII CCGG 1 cut(s) 1097
HphI GGTGA 2 cut(s) 692, 1016
Hpy166II GTNNAC 2 cut(s) 521, 1333
Hpy188I TCNGA 8 cut(s) 558, 579, 619, 874, 955, 1037, 1209, 1366
Hpy188III TCNNGA 5 cut(s) 250, 605, 649, 881, 1105
Hpy8I GTNNAC 2 cut(s) 521, 1333
Hpy99I CGWCG 1 cut(s) 1052
HpyAV CCTTC 4 cut(s) 752, 836, 919, 1208
HpyCH4III ACNGT 3 cut(s) 602, 715, 1052
HpyCH4IV ACGT 1 cut(s) 799
HpyF10VI GCNNNNNNNGC 3 cut(s) 340, 811, 1028
HpyF3I CTNAG 6 cut(s) 213, 618, 780, 1034, 1140, 1381
HpySE526I ACGT 1 cut(s) 799
Hsp92II CATG 5 cut(s) 253, 635, 712, 1027, 1096
HspAI GCGC 1 cut(s) 1145
KpnI GGTACC 1 cut(s) 631
Kzo9I GATC 5 cut(s) 719, 776, 1099, 1131, 1294
LmnI GCTCC 3 cut(s) 163, 1126, 1309
Lsp1109I GCAGC 3 cut(s) 478, 781, 929
LweI GCATC 3 cut(s) 61, 539, 1018
MaeI CTAG 2 cut(s) 155, 900
MaeII ACGT 1 cut(s) 799
MaeIII GTNAC 2 cut(s) 451, 1088
MalI GATC 5 cut(s) 721, 778, 1101, 1133, 1296
MboI GATC 5 cut(s) 719, 776, 1099, 1131, 1294
MboII GAAGA 9 cut(s) 69, 171, 174, 341, 492, 682, 922, 995, 1222
MfeI CAATTG 2 cut(s) 195, 659
MflI RGATCY 4 cut(s) 719, 776, 1099, 1294
MhlI GDGCHC 2 cut(s) 992, 1314
MlyI GAGTC 4 cut(s) 431, 498, 623, 863
MmeI TCCRAC 1 cut(s) 81
Mph1103I ATGCAT 1 cut(s) 554
MroXI GAANNNNTTC 2 cut(s) 232, 929
MseI TTAA 4 cut(s) 96, 132, 537, 786
MslI CAYNNNNRTG 1 cut(s) 1328
MspCI CTTAAG 1 cut(s) 785
MspI CCGG 1 cut(s) 1097
MunI CAATTG 2 cut(s) 195, 659
Mva1269I GAATGC 1 cut(s) 552
MvnI CGCG 1 cut(s) 383
MwoI GCNNNNNNNGC 3 cut(s) 340, 811, 1028
NcoI CCATGG 1 cut(s) 1023
NdeII GATC 5 cut(s) 719, 776, 1099, 1131, 1294
NheI GCTAGC 1 cut(s) 154
NlaIII CATG 5 cut(s) 253, 635, 712, 1027, 1096
NlaIV GGNNCC 2 cut(s) 323, 629
NmeAIII GCCGAG 1 cut(s) 188
NmuCI GTSAC 1 cut(s) 1088
NsiI ATGCAT 1 cut(s) 554
NspI RCATGY 1 cut(s) 1096
OliI CACNNNNGTG 1 cut(s) 1328
PagI TCATGA 1 cut(s) 249
PceI AGGCCT 2 cut(s) 343, 762
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PctI GAATGC 1 cut(s) 552
PdmI GAANNNNTTC 2 cut(s) 232, 929
PfeI GAWTC 2 cut(s) 483, 736
PflMI CCANNNNNTGG 1 cut(s) 1258
PkrI GCNGC 4 cut(s) 493, 796, 919, 1021
PleI GAGTC 4 cut(s) 430, 498, 622, 863
PmaCI CACGTG 1 cut(s) 800
PmlI CACGTG 1 cut(s) 800
PpsI GAGTC 4 cut(s) 430, 498, 622, 863
Ppu21I YACGTR 1 cut(s) 800
Psp124BI GAGCTC 2 cut(s) 992, 1314
PspCI CACGTG 1 cut(s) 800
PspN4I GGNNCC 2 cut(s) 323, 629
PspPI GGNCC 4 cut(s) 105, 767, 1164, 1338
PsuI RGATCY 4 cut(s) 719, 776, 1099, 1294
RsaI GTAC 2 cut(s) 395, 629
RsaNI GTAC 2 cut(s) 394, 628
RseI CAYNNNNRTG 1 cut(s) 1328
SacI GAGCTC 2 cut(s) 992, 1314
SaqAI TTAA 4 cut(s) 96, 132, 537, 786
SatI GCNGC 4 cut(s) 492, 795, 918, 1020
Sau3AI GATC 5 cut(s) 719, 776, 1099, 1131, 1294
Sau96I GGNCC 4 cut(s) 105, 767, 1164, 1338
ScaI AGTACT 1 cut(s) 395
SchI GAGTC 4 cut(s) 431, 498, 623, 863
SduI GDGCHC 2 cut(s) 992, 1314
SfaNI GCATC 3 cut(s) 61, 539, 1018
SinI GGWCC 3 cut(s) 767, 1164, 1338
SmiMI CAYNNNNRTG 1 cut(s) 1328
SmlI CTYRAG 2 cut(s) 419, 785
SmoI CTYRAG 2 cut(s) 419, 785
SseBI AGGCCT 2 cut(s) 343, 762
SsiI CCGC 5 cut(s) 242, 299, 383, 1020, 1246
SspMI CTAG 2 cut(s) 155, 900
SstI GAGCTC 2 cut(s) 992, 1314
StuI AGGCCT 2 cut(s) 343, 762
StyI CCWWGG 4 cut(s) 326, 763, 770, 1023
TaaI ACNGT 3 cut(s) 602, 715, 1052
TaiI ACGT 1 cut(s) 802
TaqI TCGA 6 cut(s) 236, 368, 571, 642, 648, 1047
TatI WGTACW 1 cut(s) 393
TauI GCSGC 1 cut(s) 1022
TfiI GAWTC 2 cut(s) 483, 736
Tru1I TTAA 4 cut(s) 96, 132, 537, 786
Tru9I TTAA 4 cut(s) 96, 132, 537, 786
TscAI CASTG 4 cut(s) 286, 868, 1154, 1330
TseFI GTSAC 1 cut(s) 1088
TseI GCWGC 3 cut(s) 491, 794, 917
Tsp45I GTSAC 1 cut(s) 1088
TspDTI ATGAA 2 cut(s) 238, 938
TspGWI ACGGA 1 cut(s) 1095
TspRI CASTG 4 cut(s) 286, 868, 1154, 1330
Van91I CCANNNNNTGG 1 cut(s) 1258
Vha464I CTTAAG 1 cut(s) 785
VpaK11BI GGWCC 3 cut(s) 767, 1164, 1338
XagI CCTNNNNNAGG 2 cut(s) 410, 898
XapI RAATTY 4 cut(s) 134, 875, 884, 956
XceI RCATGY 1 cut(s) 1096
XmnI GAANNNNTTC 2 cut(s) 232, 929
XspI CTAG 2 cut(s) 155, 900
ZrmI AGTACT 1 cut(s) 395
Zsp2I ATGCAT 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.