pycom15g16590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010264
Physical Location & Seq
Forward (+)
11625809 .. 11627081
1273 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g16590.4

Sequence Viewer

Length: 714 bp
ATGGTCTCAGCTTCTCTCTCAATTCTCTCCTCCTCCTCCTCGTTTCCCTCCAACTCCGCCACTCACTCCGATGCTTCCTCCACCTCCACCACCTTCAAGGCCAGGCCTTTCGAATCCTCCAAACGTACCCTCAGATTCCCCAAATCCCCAAGGCTCCTTCCTTTCAAGGTCTTCGGCTCCTCCTCTGTCAGCCCAATTGAGGACGGCTCCGCCGAGCAATTTTTGCAGACCAATTCGATTGCGGATTTCATGAGGTTCAAAAGGGGTGACAATGGCGGCACCGGGGAGCTGCAGACGGCGGTTGTCAGCTACAAAAAGCGGTTCCCTTGGTCGCTTTTGAGGCCGTTTCTTCAGGTTGATTTGGTTTCGACAATTCACATCGCGGATAAAGAGTACTTTGAGACCCTCCAAAAGGAACTTGAGTCCTATGATTGTGTCCTGTATGAGATGGTGACTAGCCGGGAGAGTTTAGAGAACAGAAGATTCCTTGCTGCCACAAAAAGGCTAAAAGCCAAGGGCTCCCGCTCAAGAGGATTTAACATCCTGGGATGCATTCAGCGACAGATGGCTCGAGTTCTAACGCTTGATTTCCAATTAGACTGTCTTGATTACGAGTCTGAGAATTGGTACCATGCAGATCGATCGACTTCGAGACTTTCAAATTGCTTCAGGAAGAAAAGGGTGAAAGCTTCTTCACTTTTGCGAGAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

26.96

Weight (kDa)

9.74

Isoelectric Point (pI)

59.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19540 AT5G19540
fragaria_vesca FvH4_1g04721 FvH4_1g04721 FvH4_1g04721
malus_domestica MD02G1046200.v1.1 MD15G1184300.v1.1
prunus_persica Prupe.7G231800_v2.0.a1
pyrus_communis pycom02g03870 pycom15g16590
rosa_chinensis RchiOBHm_Chr2g0090331
rosa_laevigata RLG00000016099
rosa_multiflora Rmu_sc0006235.1_g000006
rosa_roxburghii Rroxscaffold_2G00151270
rosa_rugosa Rorug02G0006600 Rorug02G0006600
rosa_samantha Rh2AG052600 Rh2BG051200 Rh2CG053400 Rh2DG052500
rosa_wichuraiana Rw2G004430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 627
AccB1I GGYRCC 2 cut(s) 278, 627
AccBSI CCGCTC 1 cut(s) 525
AccII CGCG 1 cut(s) 383
AciI CCGC 8 cut(s) 57, 210, 242, 276, 299, 319, 383, 523
AcuI CTGAAG 2 cut(s) 335, 652
AfaI GTAC 3 cut(s) 127, 395, 629
AfiI CCNNNNNNNGG 3 cut(s) 199, 412, 501
AgsI TTSAA 4 cut(s) 97, 166, 259, 660
AjnI CCWGG 2 cut(s) 101, 543
AluBI AGCT 4 cut(s) 11, 289, 309, 689
AluI AGCT 4 cut(s) 11, 289, 309, 689
Alw26I GTCTC 3 cut(s) 10, 395, 646
Ama87I CYCGRG 1 cut(s) 570
AoxI GGCC 3 cut(s) 99, 104, 341
ApeKI GCWGC 2 cut(s) 289, 491
Asp718I GGTACC 1 cut(s) 627
AsuC2I CCSGG 2 cut(s) 283, 461
AsuHPI GGTGA 3 cut(s) 278, 463, 694
AsuII TTCGAA 1 cut(s) 111
AvaI CYCGRG 1 cut(s) 570
BanI GGYRCC 2 cut(s) 278, 627
BanII GRGCYC 1 cut(s) 521
BbsI GAAGAC 1 cut(s) 163
BbvI GCAGC 2 cut(s) 276, 478
BccI CCATC 2 cut(s) 442, 559
BceAI ACGGC 3 cut(s) 220, 312, 328
BcgI CGANNNNNNTGC 2 cut(s) 624, 658
BciT130I CCWGG 2 cut(s) 103, 545
BcnI CCSGG 2 cut(s) 283, 461
BcoDI GTCTC 3 cut(s) 10, 395, 646
BfaI CTAG 1 cut(s) 456
BfmI CTRYAG 1 cut(s) 290
BisI GCNGC 3 cut(s) 277, 290, 492
BlsI GCNGC 3 cut(s) 278, 291, 493
BmcAI AGTACT 1 cut(s) 395
Bme1390I CCNGG 4 cut(s) 103, 283, 461, 545
BmeT110I CYCGRG 1 cut(s) 570
BmiI GGNNCC 7 cut(s) 155, 178, 208, 280, 323, 520, 629
BmrFI CCNGG 4 cut(s) 103, 283, 461, 545
BmsI GCATC 2 cut(s) 61, 539
BpiI GAAGAC 1 cut(s) 163
BplI GAGNNNNNCTC 2 cut(s) 191, 223
Bpu14I TTCGAA 1 cut(s) 111
BpuEI CTTGAG 2 cut(s) 440, 511
BpuMI CCSGG 2 cut(s) 283, 461
Bsa29I ATCGAT 1 cut(s) 640
BsaI GGTCTC 2 cut(s) 10, 395
BsaJI CCNNGG 5 cut(s) 149, 282, 326, 513, 544
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 412, 501
BseBI CCWGG 2 cut(s) 103, 545
BseCI ATCGAT 1 cut(s) 640
BseDI CCNNGG 5 cut(s) 149, 282, 326, 513, 544
BseGI GGATG 2 cut(s) 540, 554
BseLI CCNNNNNNNGG 3 cut(s) 199, 412, 501
BseMII CTCAG 3 cut(s) 21, 145, 609
BseRI GAGGAG 6 cut(s) 19, 22, 25, 28, 169, 172
BseXI GCAGC 2 cut(s) 276, 478
Bsh1236I CGCG 1 cut(s) 383
Bsh1285I CGRYCG 1 cut(s) 644
BshFI GGCC 3 cut(s) 101, 106, 343
BshNI GGYRCC 2 cut(s) 278, 627
BshVI ATCGAT 1 cut(s) 640
BsiEI CGRYCG 1 cut(s) 644
BsiHKCI CYCGRG 1 cut(s) 570
BsiSI CCGG 2 cut(s) 282, 460
BslI CCNNNNNNNGG 3 cut(s) 199, 412, 501
BsmAI GTCTC 3 cut(s) 10, 395, 646
BsmI GAATGC 1 cut(s) 552
BsnI GGCC 3 cut(s) 101, 106, 343
Bso31I GGTCTC 2 cut(s) 10, 395
BsoBI CYCGRG 1 cut(s) 570
Bsp119I TTCGAA 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 521
Bsp143I GATC 2 cut(s) 637, 641
BspACI CCGC 8 cut(s) 57, 210, 242, 276, 299, 319, 383, 523
BspANI GGCC 3 cut(s) 101, 106, 343
BspCNI CTCAG 3 cut(s) 20, 144, 610
BspDI ATCGAT 1 cut(s) 640
BspFNI CGCG 1 cut(s) 383
BspHI TCATGA 1 cut(s) 249
BspLI GGNNCC 7 cut(s) 155, 178, 208, 280, 323, 520, 629
BspMAI CTGCAG 1 cut(s) 294
BspT104I TTCGAA 1 cut(s) 111
BspT107I GGYRCC 2 cut(s) 278, 627
BspTNI GGTCTC 2 cut(s) 10, 395
BsrBI CCGCTC 1 cut(s) 525
BssECI CCNNGG 5 cut(s) 149, 282, 326, 513, 544
BssMI GATC 2 cut(s) 637, 641
BssT1I CCWWGG 3 cut(s) 149, 326, 513
Bst2UI CCWGG 2 cut(s) 103, 545
Bst4CI ACNGT 1 cut(s) 602
BstAPI GCANNNNNTGC 1 cut(s) 223
BstBI TTCGAA 1 cut(s) 111
BstDEI CTNAG 3 cut(s) 7, 131, 618
BstENI CCTNNNNNAGG 1 cut(s) 410
BstF5I GGATG 2 cut(s) 540, 554
BstFNI CGCG 1 cut(s) 383
BstKTI GATC 2 cut(s) 640, 644
BstMAI GTCTC 3 cut(s) 10, 395, 646
BstMBI GATC 2 cut(s) 637, 641
BstMCI CGRYCG 1 cut(s) 644
BstMWI GCNNNNNNNGC 2 cut(s) 223, 340
BstNI CCWGG 2 cut(s) 103, 545
BstSCI CCNGG 4 cut(s) 101, 281, 459, 543
BstSFI CTRYAG 1 cut(s) 290
BstUI CGCG 1 cut(s) 383
BstV1I GCAGC 2 cut(s) 276, 478
BstV2I GAAGAC 1 cut(s) 163
Bsu15I ATCGAT 1 cut(s) 640
BsuRI GGCC 3 cut(s) 101, 106, 343
BsuTUI ATCGAT 1 cut(s) 640
BtgZI GCGATG 1 cut(s) 364
BtsCI GGATG 2 cut(s) 540, 554
CciI TCATGA 1 cut(s) 249
ClaI ATCGAT 1 cut(s) 640
Csp6I GTAC 3 cut(s) 126, 394, 628
CviAII CATG 2 cut(s) 250, 632
CviQI GTAC 3 cut(s) 126, 394, 628
DdeI CTNAG 3 cut(s) 7, 131, 618
DpnI GATC 2 cut(s) 639, 643
DpnII GATC 2 cut(s) 637, 641
EciI GGCGGA 2 cut(s) 46, 199
Eco130I CCWWGG 3 cut(s) 149, 326, 513
Eco147I AGGCCT 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 521
Eco31I GGTCTC 2 cut(s) 10, 395
Eco57I CTGAAG 2 cut(s) 335, 652
Eco88I CYCGRG 1 cut(s) 570
EcoNI CCTNNNNNAGG 1 cut(s) 410
EcoRII CCWGG 2 cut(s) 101, 543
EcoT14I CCWWGG 3 cut(s) 149, 326, 513
EcoT22I ATGCAT 1 cut(s) 554
EcoT38I GRGCYC 1 cut(s) 521
ErhI CCWWGG 3 cut(s) 149, 326, 513
FaeI CATG 2 cut(s) 253, 635
FaiI YATR 4 cut(s) 251, 429, 444, 633
FatI CATG 2 cut(s) 249, 631
FauI CCCGC 1 cut(s) 530
Fnu4HI GCNGC 3 cut(s) 277, 290, 492
FokI GGATG 2 cut(s) 527, 561
FriOI GRGCYC 1 cut(s) 521
Fsp4HI GCNGC 3 cut(s) 277, 290, 492
FspBI CTAG 1 cut(s) 456
GluI GCNGC 3 cut(s) 277, 290, 492
HaeIII GGCC 3 cut(s) 101, 106, 343
HapII CCGG 2 cut(s) 282, 460
Hin1II CATG 2 cut(s) 253, 635
HindIII AAGCTT 1 cut(s) 687
HinfI GANTC 5 cut(s) 113, 135, 422, 483, 614
HpaII CCGG 2 cut(s) 282, 460
HphI GGTGA 3 cut(s) 278, 463, 694
Hpy188I TCNGA 3 cut(s) 70, 134, 619
Hpy188III TCNNGA 5 cut(s) 250, 528, 605, 651, 670
HpyAV CCTTC 2 cut(s) 103, 167
HpyCH4III ACNGT 1 cut(s) 602
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 4 cut(s) 226, 292, 552, 635
HpyF10VI GCNNNNNNNGC 2 cut(s) 223, 340
HpyF3I CTNAG 3 cut(s) 7, 131, 618
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 2 cut(s) 253, 635
KpnI GGTACC 1 cut(s) 631
Kzo9I GATC 2 cut(s) 637, 641
LmnI GCTCC 5 cut(s) 159, 182, 212, 286, 524
LpnPI CCDG 9 cut(s) 88, 115, 295, 338, 452, 473, 530, 557, 655
Lsp1109I GCAGC 2 cut(s) 276, 478
LweI GCATC 2 cut(s) 61, 539
MaeI CTAG 1 cut(s) 456
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 2 cut(s) 266, 451
MalI GATC 2 cut(s) 639, 643
MbiI CCGCTC 1 cut(s) 525
MboI GATC 2 cut(s) 637, 641
MboII GAAGA 5 cut(s) 163, 341, 492, 684, 685
MfeI CAATTG 1 cut(s) 195
MhlI GDGCHC 1 cut(s) 521
MluCI AATT 8 cut(s) 21, 195, 218, 232, 372, 593, 622, 661
MlyI GAGTC 2 cut(s) 431, 623
MmeI TCCRAC 1 cut(s) 75
Mph1103I ATGCAT 1 cut(s) 554
MseI TTAA 1 cut(s) 537
MslI CAYNNNNRTG 1 cut(s) 69
MspI CCGG 2 cut(s) 282, 460
MspR9I CCNGG 4 cut(s) 103, 283, 461, 545
MunI CAATTG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 552
MvaI CCWGG 2 cut(s) 103, 545
MvnI CGCG 1 cut(s) 383
MwoI GCNNNNNNNGC 2 cut(s) 223, 340
NciI CCSGG 2 cut(s) 283, 461
NdeII GATC 2 cut(s) 637, 641
NlaIII CATG 2 cut(s) 253, 635
NlaIV GGNNCC 7 cut(s) 155, 178, 208, 280, 323, 520, 629
NmeAIII GCCGAG 1 cut(s) 238
NmuCI GTSAC 2 cut(s) 266, 451
NsiI ATGCAT 1 cut(s) 554
NspV TTCGAA 1 cut(s) 111
PaeR7I CTCGAG 1 cut(s) 570
PagI TCATGA 1 cut(s) 249
PceI AGGCCT 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PctI GAATGC 1 cut(s) 552
PfeI GAWTC 3 cut(s) 113, 135, 483
PkrI GCNGC 3 cut(s) 278, 291, 493
Ple19I CGATCG 1 cut(s) 644
PleI GAGTC 2 cut(s) 430, 622
PpsI GAGTC 2 cut(s) 430, 622
Psp6I CCWGG 2 cut(s) 101, 543
PspGI CCWGG 2 cut(s) 101, 543
PspN4I GGNNCC 7 cut(s) 155, 178, 208, 280, 323, 520, 629
PspXI VCTCGAGB 1 cut(s) 570
PstI CTGCAG 1 cut(s) 294
PvuI CGATCG 1 cut(s) 644
RsaI GTAC 3 cut(s) 127, 395, 629
RsaNI GTAC 3 cut(s) 126, 394, 628
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 3 cut(s) 277, 290, 492
Sau3AI GATC 2 cut(s) 637, 641
ScaI AGTACT 1 cut(s) 395
SchI GAGTC 2 cut(s) 431, 623
ScrFI CCNGG 4 cut(s) 103, 283, 461, 545
SduI GDGCHC 1 cut(s) 521
SfaNI GCATC 2 cut(s) 61, 539
SfcI CTRYAG 1 cut(s) 290
Sfr274I CTCGAG 1 cut(s) 570
SfuI TTCGAA 1 cut(s) 111
SlaI CTCGAG 1 cut(s) 570
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 3 cut(s) 419, 526, 570
SmoI CTYRAG 3 cut(s) 419, 526, 570
Sse9I AATT 8 cut(s) 21, 195, 218, 232, 372, 593, 622, 661
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 8 cut(s) 57, 210, 242, 276, 299, 319, 383, 523
SspMI CTAG 1 cut(s) 456
StuI AGGCCT 1 cut(s) 106
StyD4I CCNGG 4 cut(s) 101, 281, 459, 543
StyI CCWWGG 3 cut(s) 149, 326, 513
TaaI ACNGT 1 cut(s) 602
TaiI ACGT 1 cut(s) 127
TaqI TCGA 7 cut(s) 111, 236, 368, 571, 640, 644, 650
TasI AATT 8 cut(s) 21, 195, 218, 232, 372, 593, 622, 661
TatI WGTACW 1 cut(s) 393
TauI GCSGC 1 cut(s) 279
TfiI GAWTC 3 cut(s) 113, 135, 483
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TseFI GTSAC 2 cut(s) 266, 451
TseI GCWGC 2 cut(s) 289, 491
Tsp45I GTSAC 2 cut(s) 266, 451
TspDTI ATGAA 1 cut(s) 238
XagI CCTNNNNNAGG 1 cut(s) 410
XhoI CTCGAG 1 cut(s) 570
XspI CTAG 1 cut(s) 456
ZrmI AGTACT 1 cut(s) 395
Zsp2I ATGCAT 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.