Rorug02G0006600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010264
Physical Location & Seq
Forward (+)
609089 .. 611884
2796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0006600.1

Sequence Viewer

Length: 312 bp
ATGGCCATGTATATCCGTGTTAAGCGTAGTAAGACAACTTACTTTATCCAGTGTGAACCAACCGAGACAATTTTAGATATTAAGCAGAAATTGCAAAATCTTATTGATCAACCGGTAAATGATCAGTGCTTGATCCTAGTCAGTACTGGGGAAGTACTGGAAGATTCAAAGACGTTGGCAGATCAAAAGGTGGAAAATGATGGCGTTGTAGCACTGACTTTGAGAAAAGATGACGATGAGTTTGAAGAAGTGAACATTGTACGACCAGATGACTTCTACCAATCTCGTGATGCAGATGCAAGCAGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.86

Weight (kDa)

4.34

Isoelectric Point (pI)

55.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 5 - 76 9.5e-12 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19540 AT5G19540
fragaria_vesca FvH4_1g04721 FvH4_1g04721 FvH4_1g04721
malus_domestica MD02G1046200.v1.1 MD15G1184300.v1.1
prunus_persica Prupe.7G231800_v2.0.a1
pyrus_communis pycom02g03870 pycom15g16590
rosa_chinensis RchiOBHm_Chr2g0090331
rosa_laevigata RLG00000016099
rosa_multiflora Rmu_sc0006235.1_g000006
rosa_roxburghii Rroxscaffold_2G00151270
rosa_rugosa Rorug02G0006600 Rorug02G0006600
rosa_samantha Rh2AG052600 Rh2BG051200 Rh2CG053400 Rh2DG052500
rosa_wichuraiana Rw2G004430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 127
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 3 cut(s) 145, 156, 261
AgeI ACCGGT 1 cut(s) 112
AgsI TTSAA 2 cut(s) 168, 245
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 1 cut(s) 127
AoxI GGCC 1 cut(s) 3
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
AsiGI ACCGGT 1 cut(s) 112
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 285
BccI CCATC 1 cut(s) 194
BclI TGATCA 2 cut(s) 106, 121
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 1 cut(s) 137
BmcAI AGTACT 2 cut(s) 145, 156
BmrI ACTGGG 1 cut(s) 156
BmsI GCATC 2 cut(s) 280, 286
BmuI ACTGGG 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 112
Bse118I RCCGGY 1 cut(s) 112
Bse1I ACTGG 3 cut(s) 49, 151, 162
BseNI ACTGG 3 cut(s) 49, 151, 162
BshFI GGCC 1 cut(s) 5
BshTI ACCGGT 1 cut(s) 112
BsiSI CCGG 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 59
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 4 cut(s) 106, 121, 132, 181
BspANI GGCC 1 cut(s) 5
BspPI GGATC 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 112
BsrI ACTGG 3 cut(s) 49, 151, 162
BssAI RCCGGY 1 cut(s) 112
BssMI GATC 4 cut(s) 106, 121, 132, 181
BssSI CACGAG 1 cut(s) 285
Bst2BI CACGAG 1 cut(s) 285
BstAPI GCANNNNNTGC 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 301
BstKTI GATC 4 cut(s) 109, 124, 135, 184
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 4 cut(s) 106, 121, 132, 181
BstMWI GCNNNNNNNGC 1 cut(s) 91
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 3 cut(s) 56, 131, 212
Cac8I GCNNGC 1 cut(s) 301
Cfr10I RCCGGY 1 cut(s) 112
Csp6I GTAC 3 cut(s) 144, 155, 260
CspAI ACCGGT 1 cut(s) 112
CviAII CATG 1 cut(s) 7
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
CviQI GTAC 3 cut(s) 144, 155, 260
DpnI GATC 4 cut(s) 108, 123, 134, 183
DpnII GATC 4 cut(s) 106, 121, 132, 181
EaeI YGGCCR 1 cut(s) 3
FaeI CATG 1 cut(s) 10
FaiI YATR 2 cut(s) 8, 12
FatI CATG 1 cut(s) 6
FbaI TGATCA 2 cut(s) 106, 121
FspBI CTAG 1 cut(s) 137
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 113
Hin1II CATG 1 cut(s) 10
HinfI GANTC 1 cut(s) 164
HpaII CCGG 1 cut(s) 113
Hpy166II GTNNAC 2 cut(s) 56, 253
Hpy188III TCNNGA 1 cut(s) 287
Hpy8I GTNNAC 2 cut(s) 56, 253
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 3 cut(s) 94, 293, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
HpySE526I ACGT 1 cut(s) 173
Hsp92II CATG 1 cut(s) 10
Ksp22I TGATCA 2 cut(s) 106, 121
Kzo9I GATC 4 cut(s) 106, 121, 132, 181
LpnPI CCDG 5 cut(s) 62, 126, 132, 143, 279
LweI GCATC 2 cut(s) 280, 286
MaeI CTAG 1 cut(s) 137
MaeII ACGT 1 cut(s) 173
MalI GATC 4 cut(s) 108, 123, 134, 183
MboI GATC 4 cut(s) 106, 121, 132, 181
MboII GAAGA 2 cut(s) 173, 257
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 69, 89
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 21, 81
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 91
NdeII GATC 4 cut(s) 106, 121, 132, 181
NlaIII CATG 1 cut(s) 10
PfeI GAWTC 1 cut(s) 164
PinAI ACCGGT 1 cut(s) 112
RsaI GTAC 3 cut(s) 145, 156, 261
RsaNI GTAC 3 cut(s) 144, 155, 260
SaqAI TTAA 2 cut(s) 21, 81
Sau3AI GATC 4 cut(s) 106, 121, 132, 181
ScaI AGTACT 2 cut(s) 145, 156
SetI ASST 2 cut(s) 176, 192
SfaNI GCATC 2 cut(s) 280, 286
Sse9I AATT 2 cut(s) 69, 89
SspMI CTAG 1 cut(s) 137
TaiI ACGT 1 cut(s) 176
TasI AATT 2 cut(s) 69, 89
TatI WGTACW 2 cut(s) 143, 154
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 2 cut(s) 21, 81
Tru9I TTAA 2 cut(s) 21, 81
TscAI CASTG 3 cut(s) 56, 131, 219
TspGWI ACGGA 1 cut(s) 5
TspRI CASTG 3 cut(s) 56, 131, 219
XspI CTAG 1 cut(s) 137
ZrmI AGTACT 2 cut(s) 145, 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.