Rh2BG051200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0010264
Physical Location & Seq
Forward (+)
3644910 .. 3647443
2534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG051200.1

Sequence Viewer

Length: 1080 bp
ATGTGCTTTAACCAATATAAGTGGAAATTGGTTGTCCCAGATATAAAAAAATTGATGATCTTAAATACCATGTCCAGGTACTTTTCCACCCTCCAAAAGGAGCTCGAGTCCTATGATGCTGTTCTTTTTGAGATGGTGACCAGCAGGGAGAGTTTGGAGAATAGAAGAAACCTTGCTGCCACAAGAAGACTCAAAGTCAAAAGTCCACGCTCAAGAAGCTTTAACATTCTGGGATGCATTCAGCGGCAGATGGCTCGTTCTCTGACGCTTGATTTCCAGTTAGACTGTATGGATTATGAGTCTGAGAAATGGTACCATGCAGATCTCGACTTCGAGACTTTCAAGTTGCTTCAGGATGAAAAAGGTGAAAGCTTCTTCAGCTTTGCAAGGGATATGACCATTAGATCCACGAAAGCTATGATGCAACCTGAAATTCCAGAAGACCTTGATCCTTGGAGATCTAAGCTTTTATGGGCCTCACGTGTGCTTCCGATGCCACTTGTTGGCCTCCTCATTATTGGAGGTGTTTGTGCAGACACAGGCAGCCGGCCATCAGAATTCCCAGAACTAGAAGCCTTATCCAGGCTTGATTTTGGTGGTGCAATGAAGGTCTTCTTGGCCAAAAGACTAACATCGGAATTCACACAGGCGACAGCTGATGTAGAAGAGAGTTCTGTGATCATTGGTCAGAGAAACAGAGCTGCCATGGATGCTCTCACAAAAGCAATTGACGACGGGCACAATAGGATTGCAATACTATACGGAGGTGGTCACATGCCTGATCTAGGAAGGAGATTACAAGAGTTGGACCTGATCCCTTCTCGGGCGCAGTGGGTAACGGCGTGGTCCATAAAGAAGAGGAATTTTAACAGCAATTCACTTCCATTTCTGAAGACAATGGCTGAAGTTTCAGGTTGGCCTTTGAATCGCTACCAGACTTTGGCATTGCTCATATTTTCGTCGGTGCTTGCAATAGATCTCTGGTTTTGGGAGCTCTTTTTTGGCACTGCTGTCGACTTTTTCTCTCTAGTTGGTTCACAGATTTCCCAGTATGTTGATAATCCACATATGATCTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

359

Amino Acids

41.24

Weight (kDa)

6.92

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19540 AT5G19540
fragaria_vesca FvH4_1g04721 FvH4_1g04721 FvH4_1g04721
malus_domestica MD02G1046200.v1.1 MD15G1184300.v1.1
prunus_persica Prupe.7G231800_v2.0.a1
pyrus_communis pycom02g03870 pycom15g16590
rosa_chinensis RchiOBHm_Chr2g0090331
rosa_laevigata RLG00000016099
rosa_multiflora Rmu_sc0006235.1_g000006
rosa_roxburghii Rroxscaffold_2G00151270
rosa_rugosa Rorug02G0006600 Rorug02G0006600
rosa_samantha Rh2AG052600 Rh2BG051200 Rh2CG053400 Rh2DG052500
rosa_wichuraiana Rw2G004430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 312
AccB1I GGYRCC 1 cut(s) 312
AccB7I CCANNNNNTGG 2 cut(s) 503, 940
AccI GTMKAC 1 cut(s) 1014
AciI CCGC 1 cut(s) 244
AclWI GGATC 3 cut(s) 399, 443, 808
AcoI YGGCCR 2 cut(s) 548, 618
AcsI RAATTY 4 cut(s) 432, 557, 638, 862
AcuI CTGAAG 4 cut(s) 335, 361, 911, 924
AcvI CACGTG 1 cut(s) 482
AfaI GTAC 2 cut(s) 80, 314
AfiI CCNNNNNNNGG 7 cut(s) 75, 97, 503, 582, 785, 823, 940
AflIII ACRYGT 1 cut(s) 481
AgsI TTSAA 2 cut(s) 343, 925
AhdI GACNNNNNGTC 1 cut(s) 194
AjnI CCWGG 2 cut(s) 74, 581
AjuI GAANNNNNNNTTGG 2 cut(s) 599, 631
AluBI AGCT 9 cut(s) 103, 219, 372, 381, 416, 466, 656, 701, 994
AluI AGCT 9 cut(s) 103, 219, 372, 381, 416, 466, 656, 701, 994
Alw21I GWGCWC 2 cut(s) 105, 996
Alw26I GTCTC 1 cut(s) 329
AlwI GGATC 3 cut(s) 399, 443, 808
Ama87I CYCGRG 2 cut(s) 104, 822
AoxI GGCC 5 cut(s) 474, 505, 548, 618, 917
ApeKI GCWGC 3 cut(s) 176, 543, 701
ApoI RAATTY 4 cut(s) 432, 557, 638, 862
Asp700I GAANNNNTTC 1 cut(s) 611
Asp718I GGTACC 1 cut(s) 312
AspLEI GCGC 1 cut(s) 829
AspS9I GGNCC 3 cut(s) 474, 808, 846
AsuHPI GGTGA 2 cut(s) 148, 377
AvaI CYCGRG 2 cut(s) 104, 822
AvaII GGWCC 2 cut(s) 808, 846
BaeGI GKGCMC 1 cut(s) 741
BalI TGGCCA 1 cut(s) 620
BanI GGYRCC 1 cut(s) 312
BanII GRGCYC 2 cut(s) 105, 996
BbrPI CACGTG 1 cut(s) 482
BbsI GAAGAC 4 cut(s) 193, 447, 604, 899
Bbv12I GWGCWC 2 cut(s) 105, 996
BbvI GCAGC 3 cut(s) 163, 555, 688
BccI CCATC 3 cut(s) 127, 244, 559
BceAI ACGGC 1 cut(s) 855
BcgI CGANNNNNNTGC 4 cut(s) 236, 270, 994, 1028
BciT130I CCWGG 2 cut(s) 76, 583
BclI TGATCA 1 cut(s) 678
BcoDI GTCTC 1 cut(s) 329
BfaI CTAG 3 cut(s) 569, 785, 1028
BglII AGATCT 3 cut(s) 322, 458, 976
BisI GCNGC 4 cut(s) 177, 245, 544, 702
BlsI GCNGC 4 cut(s) 178, 246, 545, 703
Bme1390I CCNGG 2 cut(s) 76, 583
Bme18I GGWCC 2 cut(s) 808, 846
BmeRI GACNNNNNGTC 1 cut(s) 194
BmeT110I CYCGRG 2 cut(s) 104, 822
BmgT120I GGNCC 3 cut(s) 474, 808, 846
BmiI GGNNCC 1 cut(s) 314
BmrFI CCNGG 2 cut(s) 76, 583
BmrI ACTGGG 1 cut(s) 1042
BmsI GCATC 5 cut(s) 106, 224, 411, 483, 700
BmuI ACTGGG 1 cut(s) 1042
BpiI GAAGAC 4 cut(s) 193, 447, 604, 899
BpuEI CTTGAG 1 cut(s) 196
BsaAI YACGTR 1 cut(s) 482
BsaJI CCNNGG 2 cut(s) 452, 705
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 7 cut(s) 75, 97, 503, 582, 785, 823, 940
Bse118I RCCGGY 1 cut(s) 546
Bse1I ACTGG 2 cut(s) 277, 1048
Bse3DI GCAATG 2 cut(s) 609, 944
BseBI CCWGG 2 cut(s) 76, 583
BseDI CCNNGG 2 cut(s) 452, 705
BseGI GGATG 3 cut(s) 239, 361, 715
BseLI CCNNNNNNNGG 7 cut(s) 75, 97, 503, 582, 785, 823, 940
BseMI GCAATG 2 cut(s) 609, 944
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 2 cut(s) 277, 1048
BseRI GAGGAG 1 cut(s) 500
BseSI GKGCMC 1 cut(s) 741
BseXI GCAGC 3 cut(s) 163, 555, 688
BsgI GTGCAG 1 cut(s) 552
BshFI GGCC 5 cut(s) 476, 507, 550, 620, 919
BshNI GGYRCC 1 cut(s) 312
BsiHKAI GWGCWC 2 cut(s) 105, 996
BsiHKCI CYCGRG 2 cut(s) 104, 822
BsiSI CCGG 1 cut(s) 547
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 7 cut(s) 75, 97, 503, 582, 785, 823, 940
BsmAI GTCTC 1 cut(s) 329
BsmFI GGGAC 1 cut(s) 20
BsmI GAATGC 1 cut(s) 237
BsnI GGCC 5 cut(s) 476, 507, 550, 620, 919
BsoBI CYCGRG 2 cut(s) 104, 822
Bsp1286I GDGCHC 3 cut(s) 105, 741, 996
Bsp19I CCATGG 1 cut(s) 705
BspACI CCGC 1 cut(s) 244
BspANI GGCC 5 cut(s) 476, 507, 550, 620, 919
BspCNI CTCAG 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 314
BspPI GGATC 3 cut(s) 399, 443, 808
BspT107I GGYRCC 1 cut(s) 312
BsrDI GCAATG 2 cut(s) 609, 944
BsrFI RCCGGY 1 cut(s) 546
BsrI ACTGG 2 cut(s) 277, 1048
BssAI RCCGGY 1 cut(s) 546
BssECI CCNNGG 2 cut(s) 452, 705
BssT1I CCWWGG 2 cut(s) 452, 705
Bst2UI CCWGG 2 cut(s) 76, 583
Bst4CI ACNGT 1 cut(s) 287
Bst6I CTCTTC 2 cut(s) 660, 851
BstBAI YACGTR 1 cut(s) 482
BstC8I GCNNGC 2 cut(s) 548, 969
BstDEI CTNAG 2 cut(s) 303, 462
BstDSI CCRYGG 1 cut(s) 705
BstEII GGTNACC 1 cut(s) 136
BstENI CCTNNNNNAGG 3 cut(s) 95, 580, 783
BstF5I GGATG 3 cut(s) 239, 361, 715
BstHHI GCGC 1 cut(s) 829
BstMAI GTCTC 1 cut(s) 329
BstMWI GCNNNNNNNGC 4 cut(s) 216, 378, 493, 710
BstNI CCWGG 2 cut(s) 76, 583
BstNSI RCATGY 1 cut(s) 778
BstPI GGTNACC 1 cut(s) 136
BstSCI CCNGG 2 cut(s) 74, 581
BstSLI GKGCMC 1 cut(s) 741
BstV1I GCAGC 3 cut(s) 163, 555, 688
BstV2I GAAGAC 4 cut(s) 193, 447, 604, 899
BstX2I RGATCY 4 cut(s) 322, 404, 458, 976
BstYI RGATCY 4 cut(s) 322, 404, 458, 976
BsuRI GGCC 5 cut(s) 476, 507, 550, 620, 919
BtgI CCRYGG 1 cut(s) 705
BtsCI GGATG 3 cut(s) 239, 361, 715
BtsI GCAGTG 2 cut(s) 836, 1005
BtsIMutI CAGTG 2 cut(s) 836, 1005
Cac8I GCNNGC 2 cut(s) 548, 969
CfoI GCGC 1 cut(s) 829
Cfr10I RCCGGY 1 cut(s) 546
Cfr13I GGNCC 3 cut(s) 474, 808, 846
CseI GACGC 1 cut(s) 274
Csp6I GTAC 2 cut(s) 79, 313
CspCI CAANNNNNGTGG 1 cut(s) 37
CviAII CATG 4 cut(s) 70, 317, 706, 775
CviQI GTAC 2 cut(s) 79, 313
DdeI CTNAG 2 cut(s) 303, 462
DriI GACNNNNNGTC 1 cut(s) 194
EaeI YGGCCR 2 cut(s) 548, 618
Eam1104I CTCTTC 2 cut(s) 660, 851
Eam1105I GACNNNNNGTC 1 cut(s) 194
EarI CTCTTC 2 cut(s) 660, 851
Ecl136II GAGCTC 2 cut(s) 103, 994
Eco130I CCWWGG 2 cut(s) 452, 705
Eco24I GRGCYC 2 cut(s) 105, 996
Eco47I GGWCC 2 cut(s) 808, 846
Eco53kI GAGCTC 2 cut(s) 103, 994
Eco57I CTGAAG 4 cut(s) 335, 361, 911, 924
Eco72I CACGTG 1 cut(s) 482
Eco88I CYCGRG 2 cut(s) 104, 822
Eco91I GGTNACC 1 cut(s) 136
EcoICRI GAGCTC 2 cut(s) 103, 994
EcoNI CCTNNNNNAGG 3 cut(s) 95, 580, 783
EcoO65I GGTNACC 1 cut(s) 136
EcoRI GAATTC 2 cut(s) 557, 638
EcoRII CCWGG 2 cut(s) 74, 581
EcoT14I CCWWGG 2 cut(s) 452, 705
EcoT22I ATGCAT 1 cut(s) 239
EcoT38I GRGCYC 2 cut(s) 105, 996
ErhI CCWWGG 2 cut(s) 452, 705
FaeI CATG 4 cut(s) 73, 320, 709, 778
FalI AAGNNNNNCTT 2 cut(s) 599, 631
FaqI GGGAC 1 cut(s) 20
FatI CATG 4 cut(s) 69, 316, 705, 774
FauNDI CATATG 1 cut(s) 1068
FbaI TGATCA 1 cut(s) 678
FblI GTMKAC 1 cut(s) 1014
Fnu4HI GCNGC 4 cut(s) 177, 245, 544, 702
FokI GGATG 3 cut(s) 246, 368, 722
FriOI GRGCYC 2 cut(s) 105, 996
Fsp4HI GCNGC 4 cut(s) 177, 245, 544, 702
FspBI CTAG 3 cut(s) 569, 785, 1028
GlaI GCGC 1 cut(s) 828
GluI GCNGC 4 cut(s) 177, 245, 544, 702
HaeIII GGCC 5 cut(s) 476, 507, 550, 620, 919
HapII CCGG 1 cut(s) 547
HgaI GACGC 1 cut(s) 274
HhaI GCGC 1 cut(s) 829
Hin1II CATG 4 cut(s) 73, 320, 709, 778
Hin6I GCGC 1 cut(s) 827
HinP1I GCGC 1 cut(s) 827
HincII GTYRAC 1 cut(s) 1015
HindII GTYRAC 1 cut(s) 1015
HindIII AAGCTT 3 cut(s) 217, 370, 464
HinfI GANTC 4 cut(s) 107, 189, 299, 925
HpaII CCGG 1 cut(s) 547
HphI GGTGA 2 cut(s) 148, 377
Hpy166II GTNNAC 3 cut(s) 206, 1015, 1037
Hpy188I TCNGA 7 cut(s) 264, 304, 492, 556, 637, 690, 891
Hpy188III TCNNGA 5 cut(s) 213, 326, 334, 353, 437
Hpy8I GTNNAC 3 cut(s) 206, 1015, 1037
Hpy99I CGWCG 2 cut(s) 737, 964
HpyAV CCTTC 3 cut(s) 601, 783, 828
HpyCH4III ACNGT 1 cut(s) 287
HpyCH4IV ACGT 1 cut(s) 481
HpyCH4V TGCA 8 cut(s) 237, 320, 386, 424, 533, 602, 752, 971
HpyF10VI GCNNNNNNNGC 4 cut(s) 216, 378, 493, 710
HpyF3I CTNAG 2 cut(s) 303, 462
HpySE526I ACGT 1 cut(s) 481
Hsp92II CATG 4 cut(s) 73, 320, 709, 778
HspAI GCGC 1 cut(s) 827
KpnI GGTACC 1 cut(s) 316
KroI GCCGGC 1 cut(s) 546
KroNI GCCGGC 1 cut(s) 548
Ksp22I TGATCA 1 cut(s) 678
LmnI GCTCC 2 cut(s) 100, 991
Lsp1109I GCAGC 3 cut(s) 163, 555, 688
LweI GCATC 5 cut(s) 106, 224, 411, 483, 700
MaeI CTAG 3 cut(s) 569, 785, 1028
MaeII ACGT 1 cut(s) 481
MaeIII GTNAC 3 cut(s) 136, 770, 835
MboII GAAGA 8 cut(s) 177, 198, 367, 452, 604, 677, 868, 904
MfeI CAATTG 1 cut(s) 726
MflI RGATCY 4 cut(s) 322, 404, 458, 976
MhlI GDGCHC 3 cut(s) 105, 741, 996
MlsI TGGCCA 1 cut(s) 620
MluCI AATT 8 cut(s) 26, 50, 432, 557, 638, 726, 862, 874
MluNI TGGCCA 1 cut(s) 620
MlyI GAGTC 3 cut(s) 116, 183, 308
MmeI TCCRAC 1 cut(s) 786
MnlI CCTC 7 cut(s) 101, 487, 515, 518, 521, 758, 852
Mox20I TGGCCA 1 cut(s) 620
Mph1103I ATGCAT 1 cut(s) 239
MroNI GCCGGC 1 cut(s) 546
MroXI GAANNNNTTC 1 cut(s) 611
MscI TGGCCA 1 cut(s) 620
MseI TTAA 4 cut(s) 9, 62, 222, 867
Msp20I TGGCCA 1 cut(s) 620
MspA1I CMGCKG 2 cut(s) 244, 656
MspI CCGG 1 cut(s) 547
MspR9I CCNGG 2 cut(s) 76, 583
MunI CAATTG 1 cut(s) 726
Mva1269I GAATGC 1 cut(s) 237
MvaI CCWGG 2 cut(s) 76, 583
MwoI GCNNNNNNNGC 4 cut(s) 216, 378, 493, 710
NaeI GCCGGC 1 cut(s) 548
NcoI CCATGG 1 cut(s) 705
NdeI CATATG 1 cut(s) 1068
NgoMIV GCCGGC 1 cut(s) 546
NlaIII CATG 4 cut(s) 73, 320, 709, 778
NlaIV GGNNCC 1 cut(s) 314
NmuCI GTSAC 2 cut(s) 136, 770
NsiI ATGCAT 1 cut(s) 239
NspI RCATGY 1 cut(s) 778
PaeR7I CTCGAG 1 cut(s) 104
PctI GAATGC 1 cut(s) 237
PdiI GCCGGC 1 cut(s) 548
PdmI GAANNNNTTC 1 cut(s) 611
PfeI GAWTC 1 cut(s) 925
PflMI CCANNNNNTGG 2 cut(s) 503, 940
PkrI GCNGC 4 cut(s) 178, 246, 545, 703
PleI GAGTC 3 cut(s) 115, 183, 307
PmaCI CACGTG 1 cut(s) 482
PmlI CACGTG 1 cut(s) 482
PpsI GAGTC 3 cut(s) 115, 183, 307
Ppu21I YACGTR 1 cut(s) 482
Psp124BI GAGCTC 2 cut(s) 105, 996
Psp6I CCWGG 2 cut(s) 74, 581
PspCI CACGTG 1 cut(s) 482
PspEI GGTNACC 1 cut(s) 136
PspGI CCWGG 2 cut(s) 74, 581
PspN4I GGNNCC 1 cut(s) 314
PspPI GGNCC 3 cut(s) 474, 808, 846
PspXI VCTCGAGB 1 cut(s) 104
PsuI RGATCY 4 cut(s) 322, 404, 458, 976
PvuII CAGCTG 1 cut(s) 656
RsaI GTAC 2 cut(s) 80, 314
RsaNI GTAC 2 cut(s) 79, 313
SacI GAGCTC 2 cut(s) 105, 996
SalI GTCGAC 1 cut(s) 1013
SaqAI TTAA 4 cut(s) 9, 62, 222, 867
SatI GCNGC 4 cut(s) 177, 245, 544, 702
Sau96I GGNCC 3 cut(s) 474, 808, 846
SchI GAGTC 3 cut(s) 116, 183, 308
ScrFI CCNGG 2 cut(s) 76, 583
SduI GDGCHC 3 cut(s) 105, 741, 996
SfaNI GCATC 5 cut(s) 106, 224, 411, 483, 700
Sfr274I CTCGAG 1 cut(s) 104
SinI GGWCC 2 cut(s) 808, 846
SlaI CTCGAG 1 cut(s) 104
SmlI CTYRAG 2 cut(s) 104, 211
SmoI CTYRAG 2 cut(s) 104, 211
Sse9I AATT 8 cut(s) 26, 50, 432, 557, 638, 726, 862, 874
SsiI CCGC 1 cut(s) 244
SspMI CTAG 3 cut(s) 569, 785, 1028
SstI GAGCTC 2 cut(s) 105, 996
StyD4I CCNGG 2 cut(s) 74, 581
StyI CCWWGG 2 cut(s) 452, 705
TaaI ACNGT 1 cut(s) 287
TaiI ACGT 1 cut(s) 484
TaqI TCGA 4 cut(s) 105, 327, 333, 1014
TasI AATT 8 cut(s) 26, 50, 432, 557, 638, 726, 862, 874
TauI GCSGC 1 cut(s) 247
TfiI GAWTC 1 cut(s) 925
Tru1I TTAA 4 cut(s) 9, 62, 222, 867
Tru9I TTAA 4 cut(s) 9, 62, 222, 867
TscAI CASTG 2 cut(s) 836, 1012
TseFI GTSAC 2 cut(s) 136, 770
TseI GCWGC 3 cut(s) 176, 543, 701
Tsp45I GTSAC 2 cut(s) 136, 770
TspDTI ATGAA 2 cut(s) 372, 620
TspGWI ACGGA 1 cut(s) 777
TspRI CASTG 2 cut(s) 836, 1012
Van91I CCANNNNNTGG 2 cut(s) 503, 940
VpaK11BI GGWCC 2 cut(s) 808, 846
XagI CCTNNNNNAGG 3 cut(s) 95, 580, 783
XapI RAATTY 4 cut(s) 432, 557, 638, 862
XceI RCATGY 1 cut(s) 778
XhoI CTCGAG 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 1014
XmnI GAANNNNTTC 1 cut(s) 611
XspI CTAG 3 cut(s) 569, 785, 1028
Zsp2I ATGCAT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.