AT5G19930

Integral membrane protein DUF92

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015870
Physical Location & Seq
Reverse (-)
6737512 .. 6739573
2062 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G19930.2

Sequence Viewer

Length: 867 bp
ATGGAAACGTCGCCGCAATTCAGACTTATCTTCGCCGTAATCATTTCTTCTCTCATCGCTTTCCGATCGTACAAGCGGAAGTCGCTCGATCTCTCCGGTGGAATTGCTGGATTCCTCGTTATGACCATTCACTTCACCGCCGGTTTCAGGTACGGAGCTCTGCTGCTTGTATTCTTTCTTACTTCCTCGAAACTTACCAAAGTTGGCGAAGATAAAAAAAGACGCGTTGATGTTGAGTTCAAAGAAGGTGGACAAAGGAACTGGGTACAAGTGCTATGCAATAGTGGAATTGCTTCAGTTCTAGTTGTAATTGCTTGTACTTTAACGGGTTGGAAGGACAAGTGTTTGGACTCGAAGCAGTCAGAAATTGTAACAGCTCTTATTGGTGGGATCATTGGTCATTACGCCTGCTGTAATGGAGACACTTGGTCCTCAGAGCTTGGGGTTCTTAGTGATGCCCAGCCTCGACTAATCACAACGTTTAAGCCGGTGAAGAAGGGCACAAATGGTGGAGTTACAAAGGCAGGACTCTTAGCTGCCTTGGCAGCAGGCACCACTGTTGGATTAACATTCCTTATCTTCGGACTCTTTACCGCGAGTTGTGCAAGTGATGTAGCTCTAAAGCAACTCTTAGTCATACCACTCTCTGCACTAGCTGGACTATGTGGGAGTCTTATTGATTCTATACTAGGAGCAACCATTCAATTCAGTGGTTTCTGCTCTGTCCGGAACAAGGTTGTAGGGAAACCGGGTCCAACCGTAAAGAAGATTTCAGGTGTGGACATTCTTGACAACAATGGTGTGAACTTTGTCTCCATACTCTTGACATCTTTTCTGACTTCCATTGCTTCTGTGTACATTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF92

Protein Analysis

288

Amino Acids

30.52

Weight (kDa)

9.37

Isoelectric Point (pI)

27.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF92 PF01940 15 - 276 1.9e-81 Integral membrane protein DUF92
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015870)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19930 AT5G19930
fragaria_vesca FvH4_1g04221
malus_domestica MD02G1061500.v1.1
prunus_persica Prupe.7G235100_v2.0.a1
pyrus_communis pycom15g16280
rosa_chinensis RchiOBHm_Chr2g0089771
rosa_laevigata RLG00000016054
rosa_roxburghii Rroxscaffold_2G00151630
rosa_rugosa Rorug02G0003100
rosa_samantha Rh2AG048300 Rh2BG047100 Rh2CG049200 Rh2DG048600
rosa_wichuraiana Rw2G004210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 551
AccII CGCG 2 cut(s) 225, 596
AccIII TCCGGA 1 cut(s) 726
AciI CCGC 4 cut(s) 14, 76, 138, 594
AclI AACGTT 1 cut(s) 479
AclWI GGATC 1 cut(s) 398
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 5 cut(s) 71, 152, 267, 319, 857
AfiI CCNNNNNNNGG 2 cut(s) 147, 733
AflIII ACRYGT 1 cut(s) 223
AgsI TTSAA 2 cut(s) 241, 704
AhdI GACNNNNNGTC 1 cut(s) 427
AloI GAACNNNNNNTCC 2 cut(s) 797, 829
AluBI AGCT 6 cut(s) 158, 377, 439, 536, 617, 656
AluI AGCT 6 cut(s) 158, 377, 439, 536, 617, 656
Alw21I GWGCWC 1 cut(s) 160
Alw26I GTCTC 2 cut(s) 414, 817
AlwI GGATC 1 cut(s) 398
Aor13HI TCCGGA 1 cut(s) 726
ApeKI GCWGC 3 cut(s) 163, 536, 545
Asp700I GAANNNNTTC 1 cut(s) 292
AspS9I GGNCC 2 cut(s) 429, 752
AsuC2I CCSGG 1 cut(s) 750
AsuHPI GGTGA 2 cut(s) 127, 502
AvaII GGWCC 2 cut(s) 429, 752
BaeGI GKGCMC 1 cut(s) 503
BanI GGYRCC 1 cut(s) 551
BanII GRGCYC 1 cut(s) 160
Bbv12I GWGCWC 1 cut(s) 160
BbvI GCAGC 3 cut(s) 150, 523, 557
BceAI ACGGC 1 cut(s) 20
BcnI CCSGG 1 cut(s) 750
BcoDI GTCTC 2 cut(s) 414, 817
BfaI CTAG 3 cut(s) 302, 653, 689
BisI GCNGC 4 cut(s) 14, 164, 537, 546
BlsI GCNGC 4 cut(s) 15, 165, 538, 547
Bme1390I CCNGG 1 cut(s) 750
Bme18I GGWCC 2 cut(s) 429, 752
BmeRI GACNNNNNGTC 1 cut(s) 427
BmgT120I GGNCC 2 cut(s) 429, 752
BmiI GGNNCC 2 cut(s) 553, 753
BmrFI CCNGG 1 cut(s) 750
BmrI ACTGGG 1 cut(s) 271
BmsI GCATC 1 cut(s) 445
BmuI ACTGGG 1 cut(s) 271
BpuMI CCSGG 1 cut(s) 750
BsaJI CCNNGG 1 cut(s) 540
BsaWI WCCGGW 2 cut(s) 95, 726
BsaXI ACNNNNNCTCC 2 cut(s) 797, 827
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 733
Bse118I RCCGGY 2 cut(s) 140, 487
Bse1I ACTGG 1 cut(s) 266
Bse3DI GCAATG 1 cut(s) 843
BseAI TCCGGA 1 cut(s) 726
BseDI CCNNGG 1 cut(s) 540
BseLI CCNNNNNNNGG 2 cut(s) 147, 733
BseMI GCAATG 1 cut(s) 843
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 1 cut(s) 266
BseSI GKGCMC 1 cut(s) 503
BseXI GCAGC 3 cut(s) 150, 523, 557
BseYI CCCAGC 1 cut(s) 459
BsgI GTGCAG 1 cut(s) 633
Bsh1236I CGCG 2 cut(s) 225, 596
Bsh1285I CGRYCG 1 cut(s) 68
BshNI GGYRCC 1 cut(s) 551
BsiEI CGRYCG 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 160
BsiSI CCGG 5 cut(s) 96, 141, 488, 727, 749
BslI CCNNNNNNNGG 2 cut(s) 147, 733
BsmAI GTCTC 2 cut(s) 414, 817
Bsp1286I GDGCHC 2 cut(s) 160, 503
Bsp13I TCCGGA 1 cut(s) 726
Bsp1407I TGTACA 1 cut(s) 855
Bsp143I GATC 3 cut(s) 65, 88, 390
BspACI CCGC 4 cut(s) 14, 76, 138, 594
BspCNI CTCAG 1 cut(s) 446
BspEI TCCGGA 1 cut(s) 726
BspFNI CGCG 2 cut(s) 225, 596
BspLI GGNNCC 2 cut(s) 553, 753
BspPI GGATC 1 cut(s) 398
BspT107I GGYRCC 1 cut(s) 551
BsrDI GCAATG 1 cut(s) 843
BsrFI RCCGGY 2 cut(s) 140, 487
BsrGI TGTACA 1 cut(s) 855
BsrI ACTGG 1 cut(s) 266
BssAI RCCGGY 2 cut(s) 140, 487
BssECI CCNNGG 1 cut(s) 540
BssMI GATC 3 cut(s) 65, 88, 390
BssT1I CCWWGG 1 cut(s) 540
Bst4CI ACNGT 2 cut(s) 559, 760
BstAUI TGTACA 1 cut(s) 855
BstC8I GCNNGC 2 cut(s) 409, 550
BstDEI CTNAG 4 cut(s) 433, 449, 532, 631
BstFNI CGCG 2 cut(s) 225, 596
BstKTI GATC 3 cut(s) 68, 91, 393
BstMAI GTCTC 2 cut(s) 414, 817
BstMBI GATC 3 cut(s) 65, 88, 390
BstMCI CGRYCG 1 cut(s) 68
BstMWI GCNNNNNNNGC 4 cut(s) 82, 542, 545, 602
BstSCI CCNGG 1 cut(s) 748
BstSLI GKGCMC 1 cut(s) 503
BstUI CGCG 2 cut(s) 225, 596
BstV1I GCAGC 3 cut(s) 150, 523, 557
BtgZI GCGATG 1 cut(s) 40
BtsIMutI CAGTG 2 cut(s) 555, 715
Cac8I GCNNGC 2 cut(s) 409, 550
Cfr10I RCCGGY 2 cut(s) 140, 487
Cfr13I GGNCC 2 cut(s) 429, 752
CseI GACGC 1 cut(s) 231
Csp6I GTAC 5 cut(s) 70, 151, 266, 318, 856
CspCI CAANNNNNGTGG 2 cut(s) 229, 264
CviJI RGCY 8 cut(s) 158, 377, 439, 463, 487, 536, 617, 656
CviKI_1 RGCY 8 cut(s) 158, 377, 439, 463, 487, 536, 617, 656
CviQI GTAC 5 cut(s) 70, 151, 266, 318, 856
DdeI CTNAG 4 cut(s) 433, 449, 532, 631
DpnI GATC 3 cut(s) 67, 90, 392
DpnII GATC 3 cut(s) 65, 88, 390
DriI GACNNNNNGTC 1 cut(s) 427
Eam1105I GACNNNNNGTC 1 cut(s) 427
Ecl136II GAGCTC 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 540
Eco24I GRGCYC 1 cut(s) 160
Eco47I GGWCC 2 cut(s) 429, 752
Eco53kI GAGCTC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 279
EcoICRI GAGCTC 1 cut(s) 158
EcoT14I CCWWGG 1 cut(s) 540
EcoT38I GRGCYC 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 540
FaiI YATR 6 cut(s) 122, 277, 638, 664, 686, 818
FalI AAGNNNNNCTT 2 cut(s) 614, 646
Fnu4HI GCNGC 4 cut(s) 14, 164, 537, 546
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 4 cut(s) 14, 164, 537, 546
FspBI CTAG 3 cut(s) 302, 653, 689
GluI GCNGC 4 cut(s) 14, 164, 537, 546
GsaI CCCAGC 1 cut(s) 463
HapII CCGG 5 cut(s) 96, 141, 488, 727, 749
HgaI GACGC 1 cut(s) 231
HinfI GANTC 6 cut(s) 111, 350, 528, 585, 670, 680
HpaII CCGG 5 cut(s) 96, 141, 488, 727, 749
HphI GGTGA 2 cut(s) 127, 502
Hpy166II GTNNAC 4 cut(s) 251, 781, 805, 856
Hpy188I TCNGA 7 cut(s) 23, 65, 364, 436, 584, 837, 866
Hpy188III TCNNGA 3 cut(s) 727, 788, 823
Hpy8I GTNNAC 4 cut(s) 251, 781, 805, 856
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 3 cut(s) 239, 328, 490
HpyCH4III ACNGT 2 cut(s) 559, 760
HpyCH4IV ACGT 2 cut(s) 8, 479
HpyCH4V TGCA 3 cut(s) 279, 605, 650
HpyF10VI GCNNNNNNNGC 4 cut(s) 82, 542, 545, 602
HpyF3I CTNAG 4 cut(s) 433, 449, 532, 631
HpySE526I ACGT 2 cut(s) 8, 479
Kpn2I TCCGGA 1 cut(s) 726
Kzo9I GATC 3 cut(s) 65, 88, 390
LmnI GCTCC 2 cut(s) 155, 692
Lsp1109I GCAGC 3 cut(s) 150, 523, 557
LweI GCATC 1 cut(s) 445
MaeI CTAG 3 cut(s) 302, 653, 689
MaeII ACGT 2 cut(s) 8, 479
MaeIII GTNAC 2 cut(s) 370, 514
MalI GATC 3 cut(s) 67, 90, 392
MboI GATC 3 cut(s) 65, 88, 390
MboII GAAGA 6 cut(s) 22, 39, 221, 505, 571, 778
MhlI GDGCHC 2 cut(s) 160, 503
MluCI AATT 6 cut(s) 17, 102, 288, 309, 366, 704
MluI ACGCGT 1 cut(s) 223
MlyI GAGTC 4 cut(s) 344, 522, 579, 679
MmeI TCCRAC 3 cut(s) 311, 541, 779
MnlI CCTC 4 cut(s) 125, 196, 442, 474
MroI TCCGGA 1 cut(s) 726
MroXI GAANNNNTTC 1 cut(s) 292
MseI TTAA 3 cut(s) 323, 483, 566
MspI CCGG 5 cut(s) 96, 141, 488, 727, 749
MspR9I CCNGG 1 cut(s) 750
MvnI CGCG 2 cut(s) 225, 596
MwoI GCNNNNNNNGC 4 cut(s) 82, 542, 545, 602
NciI CCSGG 1 cut(s) 750
NdeII GATC 3 cut(s) 65, 88, 390
NlaIV GGNNCC 2 cut(s) 553, 753
PdmI GAANNNNTTC 1 cut(s) 292
PfeI GAWTC 2 cut(s) 111, 680
PkrI GCNGC 4 cut(s) 15, 165, 538, 547
Ple19I CGATCG 1 cut(s) 68
PleI GAGTC 4 cut(s) 344, 522, 579, 678
PpsI GAGTC 4 cut(s) 344, 522, 579, 678
Psp124BI GAGCTC 1 cut(s) 160
Psp1406I AACGTT 1 cut(s) 479
PspFI CCCAGC 1 cut(s) 459
PspN4I GGNNCC 2 cut(s) 553, 753
PspPI GGNCC 2 cut(s) 429, 752
PvuI CGATCG 1 cut(s) 68
RsaI GTAC 5 cut(s) 71, 152, 267, 319, 857
RsaNI GTAC 5 cut(s) 70, 151, 266, 318, 856
SacI GAGCTC 1 cut(s) 160
SaqAI TTAA 3 cut(s) 323, 483, 566
SatI GCNGC 4 cut(s) 14, 164, 537, 546
Sau3AI GATC 3 cut(s) 65, 88, 390
Sau96I GGNCC 2 cut(s) 429, 752
SchI GAGTC 4 cut(s) 344, 522, 579, 679
ScrFI CCNGG 1 cut(s) 750
SduI GDGCHC 2 cut(s) 160, 503
SfaNI GCATC 1 cut(s) 445
SinI GGWCC 2 cut(s) 429, 752
Sse9I AATT 6 cut(s) 17, 102, 288, 309, 366, 704
SsiI CCGC 4 cut(s) 14, 76, 138, 594
SspMI CTAG 3 cut(s) 302, 653, 689
SstI GAGCTC 1 cut(s) 160
StyD4I CCNGG 1 cut(s) 748
StyI CCWWGG 1 cut(s) 540
TaaI ACNGT 2 cut(s) 559, 760
TaiI ACGT 2 cut(s) 11, 482
TaqI TCGA 4 cut(s) 87, 188, 353, 466
TasI AATT 6 cut(s) 17, 102, 288, 309, 366, 704
TatI WGTACW 2 cut(s) 317, 855
TauI GCSGC 1 cut(s) 16
TfiI GAWTC 2 cut(s) 111, 680
Tru1I TTAA 3 cut(s) 323, 483, 566
Tru9I TTAA 3 cut(s) 323, 483, 566
TscAI CASTG 2 cut(s) 562, 715
TseI GCWGC 3 cut(s) 163, 536, 545
TspGWI ACGGA 1 cut(s) 168
TspRI CASTG 2 cut(s) 562, 715
VpaK11BI GGWCC 2 cut(s) 429, 752
XmnI GAANNNNTTC 1 cut(s) 292
XspI CTAG 3 cut(s) 302, 653, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.