Rh2CG049200

Transmembrane protein 19-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0015870
Physical Location & Seq
Forward (+)
3903346 .. 3910629
7284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG049200.1

Sequence Viewer

Length: 972 bp
ATGGATTCACATCTAATCCAGCCGTTGATCGCGTTCCTAATCTCGACCTTCGTGGCCGCCCGAGCCTACCGCCGGAAATCACTCGACTTTTCCGGCGCAATCGCCGGCCTCGCGGTTATGACTCTTCACATTGCAGTCGGATACAGGTACGGAGCTGTGTTGCTCGTCTTCTTTTTCACCTCGTCCAAGCTCACCAAGGTTGGTGAAGACAAGAAGCGTAGAGTTGACCCTGAATTCAAAGAAGGCGGTCAACGGAATTGGTACTACTGTCGTTCAGGGTTTCCTCTGCGATCATCGTCCTTAATTTTGTTGTTTCTGTGTTTTATTGAAAGGTGGTTGCTTTTTTTTTTTTTATTCGTTTCTTTCAGGATACAGGTTCTATCGAATGCAGGGATTTCCTCTGTTTTGGTTGTGGGGCTTTGGACGCTGACGGGTTTGGAAGATAAATGCGTGGACTCGAAGGAATCGGTACTTGTTACTGCACTGATGGGTGGGGTTATAGGACACTACGCTTGCTGCAATGGAGACACTTGGTCTTCTGAGCTTGGAATTCTTAGTGATGATCAGCCTCGGTTAATCACAACCTTCAAGCCTGTGCGGAAAGGTACCAATGGCGGAGTTACTAAAGCAGGATTACTGGCAGCTGCTGCAGCAGGCTCTGTTATCGGACTGGCGTTTGTGCTTGTTGGCTTTCTCACTACAAAATGTACATATGACGTAGCACTGAAGCAGCTGTTTGTAATACCTCTTTCTACTCTTGCTGGACTTTTTGGTAGTGTCATTGATTCTCTTTTGGGAGCAACACTGCAATTCAGTGGATTCTGCACTGTTCGTAACAAGGTTGTTGGGAAACCAGGACCTACTGTCAAGAAGATATCGGGTCTCAATTTTCTTGACAACAATGCTGTGAATGTTGTATCAATCCTGATAACAACAATCATCACTTCCATTGCCTGCATTTACGTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF92

Protein Analysis

323

Amino Acids

34.97

Weight (kDa)

9.42

Isoelectric Point (pI)

32.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF92 PF01940 14 - 311 6.2e-68 Integral membrane protein DUF92
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015870)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19930 AT5G19930
fragaria_vesca FvH4_1g04221
malus_domestica MD02G1061500.v1.1
prunus_persica Prupe.7G235100_v2.0.a1
pyrus_communis pycom15g16280
rosa_chinensis RchiOBHm_Chr2g0089771
rosa_laevigata RLG00000016054
rosa_roxburghii Rroxscaffold_2G00151630
rosa_rugosa Rorug02G0003100
rosa_samantha Rh2AG048300 Rh2BG047100 Rh2CG049200 Rh2DG048600
rosa_wichuraiana Rw2G004210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 605
AccB1I GGYRCC 1 cut(s) 605
AccII CGCG 2 cut(s) 32, 113
AciI CCGC 6 cut(s) 57, 70, 113, 246, 598, 615
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 2 cut(s) 233, 549
AcuI CTGAAG 1 cut(s) 746
AfaI GTAC 5 cut(s) 149, 263, 471, 607, 709
AfiI CCNNNNNNNGG 1 cut(s) 72
AgsI TTSAA 3 cut(s) 238, 329, 589
AhdI GACNNNNNGTC 2 cut(s) 532, 863
AjnI CCWGG 1 cut(s) 853
AluBI AGCT 5 cut(s) 155, 190, 544, 644, 733
AluI AGCT 5 cut(s) 155, 190, 544, 644, 733
Alw26I GTCTC 2 cut(s) 519, 887
AlwNI CAGNNNCTG 2 cut(s) 647, 659
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 2 cut(s) 54, 106
ApeKI GCWGC 6 cut(s) 516, 641, 644, 647, 650, 730
ApoI RAATTY 2 cut(s) 233, 549
Asp718I GGTACC 1 cut(s) 605
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 857
AsuHPI GGTGA 3 cut(s) 169, 184, 215
AvaI CYCGRG 1 cut(s) 60
AvaII GGWCC 1 cut(s) 857
BaeI ACNNNNGTAYC 2 cut(s) 253, 286
BanI GGYRCC 1 cut(s) 605
BbsI GAAGAC 3 cut(s) 160, 213, 528
BbvI GCAGC 6 cut(s) 503, 631, 634, 653, 662, 742
BccI CCATC 1 cut(s) 481
BceAI ACGGC 1 cut(s) 7
BciT130I CCWGG 1 cut(s) 855
BciVI GTATCC 2 cut(s) 134, 363
BclI TGATCA 1 cut(s) 562
BcoDI GTCTC 2 cut(s) 519, 887
BfmI CTRYAG 1 cut(s) 648
BfuI GTATCC 2 cut(s) 134, 363
BisI GCNGC 7 cut(s) 57, 517, 642, 645, 648, 651, 731
BlsI GCNGC 7 cut(s) 58, 518, 643, 646, 649, 652, 732
Bme1390I CCNGG 1 cut(s) 855
Bme18I GGWCC 1 cut(s) 857
BmeRI GACNNNNNGTC 2 cut(s) 532, 863
BmeT110I CYCGRG 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 857
BmiI GGNNCC 1 cut(s) 607
BmrFI CCNGG 1 cut(s) 855
BpiI GAAGAC 3 cut(s) 160, 213, 528
BsaBI GATNNNNATC 1 cut(s) 9
BsaI GGTCTC 1 cut(s) 887
BsaJI CCNNGG 2 cut(s) 195, 569
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 2 cut(s) 642, 675
Bse3DI GCAATG 3 cut(s) 129, 526, 948
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 1 cut(s) 855
BseDI CCNNGG 2 cut(s) 195, 569
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 72
BseMI GCAATG 3 cut(s) 129, 526, 948
BseMII CTCAG 1 cut(s) 531
BseNI ACTGG 2 cut(s) 642, 675
BseXI GCAGC 6 cut(s) 503, 631, 634, 653, 662, 742
BsgI GTGCAG 2 cut(s) 465, 808
Bsh1236I CGCG 2 cut(s) 32, 113
BshFI GGCC 2 cut(s) 56, 108
BshNI GGYRCC 1 cut(s) 605
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 3 cut(s) 73, 93, 105
BslI CCNNNNNNNGG 1 cut(s) 72
BsmAI GTCTC 2 cut(s) 519, 887
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 2 cut(s) 56, 108
Bso31I GGTCTC 1 cut(s) 887
BsoBI CYCGRG 1 cut(s) 60
Bsp1407I TGTACA 1 cut(s) 707
Bsp143I GATC 3 cut(s) 27, 290, 562
BspACI CCGC 6 cut(s) 57, 70, 113, 246, 598, 615
BspANI GGCC 2 cut(s) 56, 108
BspCNI CTCAG 1 cut(s) 532
BspFNI CGCG 2 cut(s) 32, 113
BspLI GGNNCC 1 cut(s) 607
BspMAI CTGCAG 1 cut(s) 652
BspT107I GGYRCC 1 cut(s) 605
BspTNI GGTCTC 1 cut(s) 887
BsrDI GCAATG 3 cut(s) 129, 526, 948
BsrFI RCCGGY 1 cut(s) 104
BsrGI TGTACA 1 cut(s) 707
BsrI ACTGG 2 cut(s) 642, 675
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 195, 569
BssMI GATC 3 cut(s) 27, 290, 562
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 855
Bst4CI ACNGT 3 cut(s) 269, 829, 865
Bst6I CTCTTC 1 cut(s) 129
BstAPI GCANNNNNTGC 1 cut(s) 647
BstAUI TGTACA 1 cut(s) 707
BstC8I GCNNGC 4 cut(s) 106, 514, 655, 955
BstDEI CTNAG 2 cut(s) 540, 554
BstFNI CGCG 2 cut(s) 32, 113
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 3 cut(s) 30, 293, 565
BstMAI GTCTC 2 cut(s) 519, 887
BstMBI GATC 3 cut(s) 27, 290, 562
BstMWI GCNNNNNNNGC 5 cut(s) 62, 110, 424, 647, 650
BstNI CCWGG 1 cut(s) 855
BstSCI CCNGG 1 cut(s) 853
BstSFI CTRYAG 1 cut(s) 648
BstUI CGCG 2 cut(s) 32, 113
BstV1I GCAGC 6 cut(s) 503, 631, 634, 653, 662, 742
BstV2I GAAGAC 3 cut(s) 160, 213, 528
BsuI GTATCC 2 cut(s) 134, 363
BsuRI GGCC 2 cut(s) 56, 108
BtsI GCAGTG 1 cut(s) 803
BtsIMutI CAGTG 5 cut(s) 482, 722, 803, 820, 825
Cac8I GCNNGC 4 cut(s) 106, 514, 655, 955
CaiI CAGNNNCTG 2 cut(s) 647, 659
CfoI GCGC 1 cut(s) 98
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 857
CseI GACGC 1 cut(s) 433
Csp6I GTAC 5 cut(s) 148, 262, 470, 606, 708
CviQI GTAC 5 cut(s) 148, 262, 470, 606, 708
DdeI CTNAG 2 cut(s) 540, 554
DpnI GATC 3 cut(s) 29, 292, 564
DpnII GATC 3 cut(s) 27, 290, 562
DriI GACNNNNNGTC 2 cut(s) 532, 863
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 129
Eam1105I GACNNNNNGTC 2 cut(s) 532, 863
EarI CTCTTC 1 cut(s) 129
EciI GGCGGA 1 cut(s) 630
Eco130I CCWWGG 1 cut(s) 195
Eco31I GGTCTC 1 cut(s) 887
Eco32I GATATC 1 cut(s) 876
Eco47I GGWCC 1 cut(s) 857
Eco57I CTGAAG 1 cut(s) 746
Eco88I CYCGRG 1 cut(s) 60
EcoO109I RGGNCCY 1 cut(s) 857
EcoRI GAATTC 2 cut(s) 233, 549
EcoRII CCWGG 1 cut(s) 853
EcoRV GATATC 1 cut(s) 876
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaiI YATR 4 cut(s) 119, 500, 712, 714
FauNDI CATATG 1 cut(s) 712
FbaI TGATCA 1 cut(s) 562
Fnu4HI GCNGC 7 cut(s) 57, 517, 642, 645, 648, 651, 731
Fsp4HI GCNGC 7 cut(s) 57, 517, 642, 645, 648, 651, 731
GlaI GCGC 1 cut(s) 97
GluI GCNGC 7 cut(s) 57, 517, 642, 645, 648, 651, 731
HaeIII GGCC 2 cut(s) 56, 108
HapII CCGG 3 cut(s) 73, 93, 105
HgaI GACGC 1 cut(s) 433
HhaI GCGC 1 cut(s) 98
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HincII GTYRAC 2 cut(s) 226, 251
HindII GTYRAC 2 cut(s) 226, 251
HinfI GANTC 6 cut(s) 5, 121, 455, 464, 785, 819
HpaII CCGG 3 cut(s) 73, 93, 105
HphI GGTGA 3 cut(s) 169, 184, 215
Hpy166II GTNNAC 3 cut(s) 226, 251, 454
Hpy188I TCNGA 3 cut(s) 140, 541, 668
Hpy188III TCNNGA 5 cut(s) 43, 367, 868, 893, 925
Hpy8I GTNNAC 3 cut(s) 226, 251, 454
HpyAV CCTTC 4 cut(s) 58, 236, 454, 595
HpyCH4III ACNGT 3 cut(s) 269, 829, 865
HpyCH4IV ACGT 2 cut(s) 717, 963
HpyCH4V TGCA 8 cut(s) 134, 389, 482, 519, 650, 808, 825, 957
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 110, 424, 647, 650
HpyF3I CTNAG 2 cut(s) 540, 554
HpySE526I ACGT 2 cut(s) 717, 963
HspAI GCGC 1 cut(s) 96
KpnI GGTACC 1 cut(s) 609
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 3 cut(s) 27, 290, 562
LmnI GCTCC 2 cut(s) 152, 797
Lsp1109I GCAGC 6 cut(s) 503, 631, 634, 653, 662, 742
MaeII ACGT 2 cut(s) 717, 963
MaeIII GTNAC 3 cut(s) 475, 619, 833
MalI GATC 3 cut(s) 29, 292, 564
MboI GATC 3 cut(s) 27, 290, 562
MboII GAAGA 6 cut(s) 116, 160, 218, 452, 528, 883
MluCI AATT 6 cut(s) 233, 256, 303, 549, 809, 886
MlyI GAGTC 2 cut(s) 115, 449
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 6 cut(s) 119, 190, 294, 409, 579, 756
MroNI GCCGGC 1 cut(s) 104
MseI TTAA 2 cut(s) 302, 575
MspA1I CMGCKG 2 cut(s) 644, 733
MspI CCGG 3 cut(s) 73, 93, 105
MspR9I CCNGG 1 cut(s) 855
Mva1269I GAATGC 1 cut(s) 391
MvaI CCWGG 1 cut(s) 855
MvnI CGCG 2 cut(s) 32, 113
MwoI GCNNNNNNNGC 5 cut(s) 62, 110, 424, 647, 650
NaeI GCCGGC 1 cut(s) 106
NdeI CATATG 1 cut(s) 712
NdeII GATC 3 cut(s) 27, 290, 562
NgoMIV GCCGGC 1 cut(s) 104
NlaIV GGNNCC 1 cut(s) 607
PctI GAATGC 1 cut(s) 391
PdiI GCCGGC 1 cut(s) 106
PfeI GAWTC 4 cut(s) 5, 464, 785, 819
PkrI GCNGC 7 cut(s) 58, 518, 643, 646, 649, 652, 732
PleI GAGTC 2 cut(s) 115, 449
PpsI GAGTC 2 cut(s) 115, 449
PpuMI RGGWCCY 1 cut(s) 857
Psp5II RGGWCCY 1 cut(s) 857
Psp6I CCWGG 1 cut(s) 853
PspGI CCWGG 1 cut(s) 853
PspN4I GGNNCC 1 cut(s) 607
PspPI GGNCC 1 cut(s) 857
PspPPI RGGWCCY 1 cut(s) 857
PstI CTGCAG 1 cut(s) 652
PstNI CAGNNNCTG 2 cut(s) 647, 659
PvuII CAGCTG 2 cut(s) 644, 733
RsaI GTAC 5 cut(s) 149, 263, 471, 607, 709
RsaNI GTAC 5 cut(s) 148, 262, 470, 606, 708
SaqAI TTAA 2 cut(s) 302, 575
SatI GCNGC 7 cut(s) 57, 517, 642, 645, 648, 651, 731
Sau3AI GATC 3 cut(s) 27, 290, 562
Sau96I GGNCC 1 cut(s) 857
SchI GAGTC 2 cut(s) 115, 449
ScrFI CCNGG 1 cut(s) 855
SfcI CTRYAG 1 cut(s) 648
SinI GGWCC 1 cut(s) 857
Sse9I AATT 6 cut(s) 233, 256, 303, 549, 809, 886
SsiI CCGC 6 cut(s) 57, 70, 113, 246, 598, 615
StyD4I CCNGG 1 cut(s) 853
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 3 cut(s) 269, 829, 865
TaiI ACGT 2 cut(s) 720, 966
TaqI TCGA 4 cut(s) 44, 84, 383, 458
TasI AATT 6 cut(s) 233, 256, 303, 549, 809, 886
TatI WGTACW 1 cut(s) 707
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 4 cut(s) 5, 464, 785, 819
Tru1I TTAA 2 cut(s) 302, 575
Tru9I TTAA 2 cut(s) 302, 575
TscAI CASTG 5 cut(s) 489, 729, 810, 820, 832
TseI GCWGC 6 cut(s) 516, 641, 644, 647, 650, 730
TspGWI ACGGA 2 cut(s) 165, 268
TspRI CASTG 5 cut(s) 489, 729, 810, 820, 832
VpaK11BI GGWCC 1 cut(s) 857
XapI RAATTY 2 cut(s) 233, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.