Rh2BG047100

Transmembrane protein 19-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0015870
Physical Location & Seq
Forward (+)
3338036 .. 3345155
7120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG047100.1

Sequence Viewer

Length: 654 bp
ATGGATTCACATCTAATCCAGCCGTTGATCGCGTTCCTAATCTCGACCTTCGTGGCCGCCCGAGCCTACCGCCGGAAATCACTCGACTTTTCCGGCGCAATCGCCGGCCTCGCGGTTATGACTCTTCACATTGCAGTCGGATACAGGTACGGAGCTGTGTTGCTCGTCTTCTTTTTCACCTCGTCCAAGCTCACCAAGGTTGGTGAAGACAAGAAGCGTAGAGTTGACCCTGAATTCAAAGAAGGCGGTCAACGGAATTGGATACAGGTTCTATCGAATGCAGGGATTTCCTCTGTTTTGGTTGTGGGGCTTTGGACGCTGACGGGTTTGGAAGATAAATGCGTGGACTCGAAGGAATCGGTACTTGTTACTGCACTGATGGGTGGGGTTATAGGACACTACGCTTGCTGCAATGGAGACACTTGGTCTTCTGAGCTTGGAATTCTTAGTGATGATCAGCCTCGGTTAATCACAACCTTCAAGGTTGGTGTCTTTACTTTTCATTACGTTTCTGATAGAATTCTTACGTCTTGCATGCAATTGCAATTGCAATTGATTGCCTGCTGTGTCTCTCGTTGCAAATGTTTGACCTCCTTGAAGTTGCTTAGTTTCGGTATGTTTGCTTTGTGTTTTTGGTTGCACTGTGTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF92

Protein Analysis

217

Amino Acids

24.0

Weight (kDa)

8.69

Isoelectric Point (pI)

34.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF92 PF01940 14 - 161 5.3e-43 Integral membrane protein DUF92
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015870)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19930 AT5G19930
fragaria_vesca FvH4_1g04221
malus_domestica MD02G1061500.v1.1
prunus_persica Prupe.7G235100_v2.0.a1
pyrus_communis pycom15g16280
rosa_chinensis RchiOBHm_Chr2g0089771
rosa_laevigata RLG00000016054
rosa_roxburghii Rroxscaffold_2G00151630
rosa_rugosa Rorug02G0003100
rosa_samantha Rh2AG048300 Rh2BG047100 Rh2CG049200 Rh2DG048600
rosa_wichuraiana Rw2G004210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 32, 113
AciI CCGC 4 cut(s) 57, 70, 113, 246
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 3 cut(s) 233, 441, 519
AfaI GTAC 2 cut(s) 149, 363
AfiI CCNNNNNNNGG 1 cut(s) 72
AgsI TTSAA 3 cut(s) 238, 481, 598
AhdI GACNNNNNGTC 1 cut(s) 424
AluBI AGCT 3 cut(s) 155, 190, 436
AluI AGCT 3 cut(s) 155, 190, 436
Alw26I GTCTC 2 cut(s) 411, 574
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 2 cut(s) 54, 106
ApeKI GCWGC 1 cut(s) 408
ApoI RAATTY 3 cut(s) 233, 441, 519
AspLEI GCGC 1 cut(s) 98
AsuHPI GGTGA 3 cut(s) 169, 184, 215
AvaI CYCGRG 1 cut(s) 60
BbsI GAAGAC 4 cut(s) 160, 213, 420, 640
BbvI GCAGC 1 cut(s) 395
BccI CCATC 1 cut(s) 373
BceAI ACGGC 1 cut(s) 7
BciVI GTATCC 2 cut(s) 134, 255
BclI TGATCA 1 cut(s) 454
BcoDI GTCTC 2 cut(s) 411, 574
BfuI GTATCC 2 cut(s) 134, 255
BisI GCNGC 2 cut(s) 57, 409
BlsI GCNGC 2 cut(s) 58, 410
BmeRI GACNNNNNGTC 1 cut(s) 424
BmeT110I CYCGRG 1 cut(s) 60
BpiI GAAGAC 4 cut(s) 160, 213, 420, 640
BsaBI GATNNNNATC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 195, 461
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse118I RCCGGY 1 cut(s) 104
Bse3DI GCAATG 2 cut(s) 129, 418
Bse8I GATNNNNATC 1 cut(s) 9
BseDI CCNNGG 2 cut(s) 195, 461
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 72
BseMI GCAATG 2 cut(s) 129, 418
BseMII CTCAG 1 cut(s) 423
BseXI GCAGC 1 cut(s) 395
BsgI GTGCAG 1 cut(s) 357
Bsh1236I CGCG 2 cut(s) 32, 113
BshFI GGCC 2 cut(s) 56, 108
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 3 cut(s) 73, 93, 105
BslI CCNNNNNNNGG 1 cut(s) 72
BsmAI GTCTC 2 cut(s) 411, 574
BsmI GAATGC 1 cut(s) 283
BsnI GGCC 2 cut(s) 56, 108
BsoBI CYCGRG 1 cut(s) 60
Bsp143I GATC 2 cut(s) 27, 454
BspACI CCGC 4 cut(s) 57, 70, 113, 246
BspANI GGCC 2 cut(s) 56, 108
BspCNI CTCAG 1 cut(s) 424
BspFNI CGCG 2 cut(s) 32, 113
BsrDI GCAATG 2 cut(s) 129, 418
BsrFI RCCGGY 1 cut(s) 104
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 195, 461
BssMI GATC 2 cut(s) 27, 454
BssT1I CCWWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 644
Bst6I CTCTTC 1 cut(s) 129
BstC8I GCNNGC 4 cut(s) 106, 406, 536, 562
BstDEI CTNAG 3 cut(s) 432, 446, 605
BstFNI CGCG 2 cut(s) 32, 113
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 2 cut(s) 30, 457
BstMAI GTCTC 2 cut(s) 411, 574
BstMBI GATC 2 cut(s) 27, 454
BstMWI GCNNNNNNNGC 3 cut(s) 62, 110, 316
BstNSI RCATGY 1 cut(s) 538
BstUI CGCG 2 cut(s) 32, 113
BstV1I GCAGC 1 cut(s) 395
BstV2I GAAGAC 4 cut(s) 160, 213, 420, 640
BsuI GTATCC 2 cut(s) 134, 255
BsuRI GGCC 2 cut(s) 56, 108
BtsIMutI CAGTG 2 cut(s) 374, 640
Cac8I GCNNGC 4 cut(s) 106, 406, 536, 562
CfoI GCGC 1 cut(s) 98
Cfr10I RCCGGY 1 cut(s) 104
CseI GACGC 1 cut(s) 325
Csp6I GTAC 2 cut(s) 148, 362
CviAII CATG 1 cut(s) 535
CviJI RGCY 9 cut(s) 22, 56, 65, 108, 155, 190, 310, 436, 460
CviKI_1 RGCY 9 cut(s) 22, 56, 65, 108, 155, 190, 310, 436, 460
CviQI GTAC 2 cut(s) 148, 362
DdeI CTNAG 3 cut(s) 432, 446, 605
DpnI GATC 2 cut(s) 29, 456
DpnII GATC 2 cut(s) 27, 454
DriI GACNNNNNGTC 1 cut(s) 424
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 129
Eam1105I GACNNNNNGTC 1 cut(s) 424
EarI CTCTTC 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 60
EcoRI GAATTC 3 cut(s) 233, 441, 519
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 1 cut(s) 538
FaiI YATR 4 cut(s) 119, 392, 536, 617
FatI CATG 1 cut(s) 534
FbaI TGATCA 1 cut(s) 454
Fnu4HI GCNGC 2 cut(s) 57, 409
Fsp4HI GCNGC 2 cut(s) 57, 409
GlaI GCGC 1 cut(s) 97
GluI GCNGC 2 cut(s) 57, 409
HaeIII GGCC 2 cut(s) 56, 108
HapII CCGG 3 cut(s) 73, 93, 105
HgaI GACGC 1 cut(s) 325
HhaI GCGC 1 cut(s) 98
Hin1II CATG 1 cut(s) 538
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HincII GTYRAC 2 cut(s) 226, 251
HindII GTYRAC 2 cut(s) 226, 251
HinfI GANTC 4 cut(s) 5, 121, 347, 356
HpaII CCGG 3 cut(s) 73, 93, 105
HphI GGTGA 3 cut(s) 169, 184, 215
Hpy166II GTNNAC 3 cut(s) 226, 251, 346
Hpy188I TCNGA 4 cut(s) 140, 433, 514, 653
Hpy188III TCNNGA 1 cut(s) 43
Hpy8I GTNNAC 3 cut(s) 226, 251, 346
HpyAV CCTTC 4 cut(s) 58, 236, 346, 487
HpyCH4III ACNGT 1 cut(s) 644
HpyCH4IV ACGT 2 cut(s) 507, 527
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 110, 316
HpyF3I CTNAG 3 cut(s) 432, 446, 605
HpySE526I ACGT 2 cut(s) 507, 527
Hsp92II CATG 1 cut(s) 538
HspAI GCGC 1 cut(s) 96
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 2 cut(s) 27, 454
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 9 cut(s) 32, 86, 106, 118, 130, 243, 251, 267, 574
Lsp1109I GCAGC 1 cut(s) 395
MaeII ACGT 2 cut(s) 507, 527
MaeIII GTNAC 1 cut(s) 367
MalI GATC 2 cut(s) 29, 456
MboI GATC 2 cut(s) 27, 454
MboII GAAGA 6 cut(s) 116, 160, 218, 344, 420, 640
MfeI CAATTG 3 cut(s) 539, 545, 551
MluCI AATT 7 cut(s) 233, 256, 441, 519, 539, 545, 551
MlyI GAGTC 2 cut(s) 115, 341
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 5 cut(s) 119, 190, 301, 471, 601
MroNI GCCGGC 1 cut(s) 104
MseI TTAA 1 cut(s) 467
MspI CCGG 3 cut(s) 73, 93, 105
MunI CAATTG 3 cut(s) 539, 545, 551
Mva1269I GAATGC 1 cut(s) 283
MvnI CGCG 2 cut(s) 32, 113
MwoI GCNNNNNNNGC 3 cut(s) 62, 110, 316
NaeI GCCGGC 1 cut(s) 106
NdeII GATC 2 cut(s) 27, 454
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 1 cut(s) 538
NspI RCATGY 1 cut(s) 538
PaeI GCATGC 1 cut(s) 538
PctI GAATGC 1 cut(s) 283
PdiI GCCGGC 1 cut(s) 106
PfeI GAWTC 2 cut(s) 5, 356
PkrI GCNGC 2 cut(s) 58, 410
PleI GAGTC 2 cut(s) 115, 341
PpsI GAGTC 2 cut(s) 115, 341
RsaI GTAC 2 cut(s) 149, 363
RsaNI GTAC 2 cut(s) 148, 362
SaqAI TTAA 1 cut(s) 467
SatI GCNGC 2 cut(s) 57, 409
Sau3AI GATC 2 cut(s) 27, 454
SchI GAGTC 2 cut(s) 115, 341
SphI GCATGC 1 cut(s) 538
Sse9I AATT 7 cut(s) 233, 256, 441, 519, 539, 545, 551
SsiI CCGC 4 cut(s) 57, 70, 113, 246
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 644
TaiI ACGT 2 cut(s) 510, 530
TaqI TCGA 4 cut(s) 44, 84, 275, 350
TasI AATT 7 cut(s) 233, 256, 441, 519, 539, 545, 551
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 2 cut(s) 5, 356
Tru1I TTAA 1 cut(s) 467
Tru9I TTAA 1 cut(s) 467
TscAI CASTG 2 cut(s) 381, 647
TseI GCWGC 1 cut(s) 408
TspDTI ATGAA 1 cut(s) 491
TspGWI ACGGA 2 cut(s) 165, 268
TspRI CASTG 2 cut(s) 381, 647
XapI RAATTY 3 cut(s) 233, 441, 519
XceI RCATGY 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.