Prupe.7G235100_v2.0.a1

Transmembrane protein 19-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0015870
Physical Location & Seq
Reverse (-)
20447104 .. 20448866
1763 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G235100.1

Sequence Viewer

Length: 882 bp
ATGCTTAGAGCCGCAAACATGGATAAACTCTTAATCCAACCGTTAATCGCCCTTCTAATCTCGTCGTTGATCGCCGCCAGAGCCTACCGTAGAAAATCCCTGGACCTCTCAGGAGCAATCGCGGGTTTTGCTGTCATGACCATTCACATTGCAATCGGATACAGGTACGGAGCTCTGTTGCTCGTGTTCTTTTTCACATCGTCAAAGCTGACCAAGGTTGGTGAAGACAAGAAGCGTCGCGTTGACGCTGATTTCAAAGAGGGCGGTCAAAGAAATTGGGTACAAGTTTTATCAAACAGCGGGATTGCTTCAGTCTTGGTTCTTGTTCTGTGGGCAAAAACGGGGTTGCAAGACAAATGCTTGGACTCGAAAGAGTCGGTTTTCATTACATCACTGATTGGTGGGGTTATAGGTCACTATGCTTGCTGCAATGGAGACACTTGGTCTTCTGAGCTTGGAATACTTAGCGATGCTCAGCCTCGGTTAATCACAACCTTCAAGCCTGTTCGGAAGGGTACAAATGGTGGAGTTACAAAAGCAGGATTACTGGCAGCTGCAGCTGCAGGCTCGGTTGTCGGACTCACATATGTGGTCTTTGGATTTCCCACTACAAAATGTACATATGATGTTGCACTGAAGCAGCTGTTGGTGATACCTATTTCTACTCTTGCCGGACTATGTGGCAGCCTCATTGATTCTCTTTTGGGAGCAACACTGCAATTCAGTGGATTCTGCACTGTTCGTAATAAAGTTGTTGGAAAACCAGGGCCTACAGTTAAGAAAATTTCAGGTCTTAACTATCTTGACAACAATGCTGTGAATGTTGTGTCAATACTGCTGACAACAATTCTCACTTCCGTTGCCTGCACTTACATCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF92

Protein Analysis

294

Amino Acids

31.13

Weight (kDa)

9.58

Isoelectric Point (pI)

29.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015870)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19930 AT5G19930
fragaria_vesca FvH4_1g04221
malus_domestica MD02G1061500.v1.1
prunus_persica Prupe.7G235100_v2.0.a1
pyrus_communis pycom15g16280
rosa_chinensis RchiOBHm_Chr2g0089771
rosa_laevigata RLG00000016054
rosa_roxburghii Rroxscaffold_2G00151630
rosa_rugosa Rorug02G0003100
rosa_samantha Rh2AG048300 Rh2BG047100 Rh2CG049200 Rh2DG048600
rosa_wichuraiana Rw2G004210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 122, 240
AciI CCGC 5 cut(s) 12, 75, 122, 264, 300
AcsI RAATTY 1 cut(s) 783
AcuI CTGAAG 2 cut(s) 294, 656
AfaI GTAC 4 cut(s) 167, 282, 517, 619
AgsI TTSAA 2 cut(s) 256, 499
AhdI GACNNNNNGTC 1 cut(s) 442
AjnI CCWGG 2 cut(s) 99, 763
AjuI GAANNNNNNNTTGG 2 cut(s) 629, 661
AleI CACNNNNGTG 1 cut(s) 587
AluBI AGCT 6 cut(s) 173, 208, 454, 554, 560, 643
AluI AGCT 6 cut(s) 173, 208, 454, 554, 560, 643
Alw21I GWGCWC 1 cut(s) 175
Alw26I GTCTC 1 cut(s) 429
AoxI GGCC 1 cut(s) 767
ApeKI GCWGC 7 cut(s) 426, 551, 554, 557, 560, 640, 684
ApoI RAATTY 1 cut(s) 783
AspS9I GGNCC 2 cut(s) 103, 767
AsuHPI GGTGA 2 cut(s) 233, 661
AvaII GGWCC 1 cut(s) 103
BanII GRGCYC 1 cut(s) 175
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 2 cut(s) 231, 438
Bbv12I GWGCWC 1 cut(s) 175
BbvI GCAGC 7 cut(s) 413, 541, 547, 563, 569, 652, 696
BciT130I CCWGG 2 cut(s) 101, 765
BciVI GTATCC 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 429
BfmI CTRYAG 3 cut(s) 555, 561, 771
BfuI GTATCC 1 cut(s) 152
BisI GCNGC 9 cut(s) 12, 75, 427, 552, 555, 558, 561, 641, 685
BlpI GCTNAGC 1 cut(s) 474
BlsI GCNGC 9 cut(s) 13, 76, 428, 553, 556, 559, 562, 642, 686
Bme1390I CCNGG 2 cut(s) 101, 765
Bme18I GGWCC 1 cut(s) 103
BmeRI GACNNNNNGTC 1 cut(s) 442
BmgT120I GGNCC 2 cut(s) 103, 767
BmrFI CCNGG 2 cut(s) 101, 765
BmsI GCATC 1 cut(s) 460
BpiI GAAGAC 2 cut(s) 231, 438
Bpu1102I GCTNAGC 1 cut(s) 474
BsaJI CCNNGG 4 cut(s) 99, 213, 479, 764
Bse1I ACTGG 1 cut(s) 552
Bse3DI GCAATG 2 cut(s) 147, 436
BseBI CCWGG 2 cut(s) 101, 765
BseDI CCNNGG 4 cut(s) 99, 213, 479, 764
BseMI GCAATG 2 cut(s) 147, 436
BseMII CTCAG 3 cut(s) 123, 441, 488
BseNI ACTGG 1 cut(s) 552
BseXI GCAGC 7 cut(s) 413, 541, 547, 563, 569, 652, 696
BsgI GTGCAG 2 cut(s) 718, 850
Bsh1236I CGCG 2 cut(s) 122, 240
BshFI GGCC 1 cut(s) 769
BsiHKAI GWGCWC 1 cut(s) 175
BsiSI CCGG 1 cut(s) 672
BsmAI GTCTC 1 cut(s) 429
BsnI GGCC 1 cut(s) 769
Bsp1286I GDGCHC 1 cut(s) 175
Bsp1407I TGTACA 1 cut(s) 617
Bsp143I GATC 1 cut(s) 69
Bsp1720I GCTNAGC 1 cut(s) 474
BspACI CCGC 5 cut(s) 12, 75, 122, 264, 300
BspANI GGCC 1 cut(s) 769
BspCNI CTCAG 3 cut(s) 122, 442, 487
BspFNI CGCG 2 cut(s) 122, 240
BspHI TCATGA 1 cut(s) 135
BspMAI CTGCAG 2 cut(s) 559, 565
BsrDI GCAATG 2 cut(s) 147, 436
BsrGI TGTACA 1 cut(s) 617
BsrI ACTGG 1 cut(s) 552
BssECI CCNNGG 4 cut(s) 99, 213, 479, 764
BssMI GATC 1 cut(s) 69
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 213
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 101, 765
Bst4CI ACNGT 4 cut(s) 42, 89, 739, 775
BstAUI TGTACA 1 cut(s) 617
BstC8I GCNNGC 3 cut(s) 424, 565, 865
BstDEI CTNAG 5 cut(s) 5, 109, 450, 464, 474
BstFNI CGCG 2 cut(s) 122, 240
BstKTI GATC 1 cut(s) 72
BstMAI GTCTC 1 cut(s) 429
BstMBI GATC 1 cut(s) 69
BstMWI GCNNNNNNNGC 4 cut(s) 80, 128, 557, 560
BstNI CCWGG 2 cut(s) 101, 765
BstSCI CCNGG 2 cut(s) 99, 763
BstSFI CTRYAG 3 cut(s) 555, 561, 771
BstUI CGCG 2 cut(s) 122, 240
BstV1I GCAGC 7 cut(s) 413, 541, 547, 563, 569, 652, 696
BstV2I GAAGAC 2 cut(s) 231, 438
BsuI GTATCC 1 cut(s) 152
BsuRI GGCC 1 cut(s) 769
BtgZI GCGATG 1 cut(s) 483
BtsI GCAGTG 1 cut(s) 713
BtsIMutI CAGTG 5 cut(s) 392, 632, 713, 730, 735
Cac8I GCNNGC 3 cut(s) 424, 565, 865
CciI TCATGA 1 cut(s) 135
Cfr13I GGNCC 2 cut(s) 103, 767
CseI GACGC 2 cut(s) 224, 254
Csp6I GTAC 4 cut(s) 166, 281, 516, 618
CviAII CATG 2 cut(s) 19, 136
CviQI GTAC 4 cut(s) 166, 281, 516, 618
DdeI CTNAG 5 cut(s) 5, 109, 450, 464, 474
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
DriI GACNNNNNGTC 1 cut(s) 442
Eam1105I GACNNNNNGTC 1 cut(s) 442
Ecl136II GAGCTC 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 175
Eco47I GGWCC 1 cut(s) 103
Eco53kI GAGCTC 1 cut(s) 173
Eco57I CTGAAG 2 cut(s) 294, 656
EcoICRI GAGCTC 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 767
EcoRII CCWGG 2 cut(s) 99, 763
EcoT14I CCWWGG 1 cut(s) 213
EcoT38I GRGCYC 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 2 cut(s) 22, 139
FaiI YATR 9 cut(s) 20, 137, 410, 420, 586, 588, 622, 624, 679
FatI CATG 2 cut(s) 18, 135
FauI CCCGC 2 cut(s) 115, 293
FauNDI CATATG 2 cut(s) 586, 622
Fnu4HI GCNGC 9 cut(s) 12, 75, 427, 552, 555, 558, 561, 641, 685
FriOI GRGCYC 1 cut(s) 175
Fsp4HI GCNGC 9 cut(s) 12, 75, 427, 552, 555, 558, 561, 641, 685
GluI GCNGC 9 cut(s) 12, 75, 427, 552, 555, 558, 561, 641, 685
HaeIII GGCC 1 cut(s) 769
HapII CCGG 1 cut(s) 672
HgaI GACGC 2 cut(s) 224, 254
Hin1II CATG 2 cut(s) 22, 139
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 5 cut(s) 365, 374, 579, 695, 729
HpaII CCGG 1 cut(s) 672
HphI GGTGA 2 cut(s) 233, 661
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 4 cut(s) 158, 451, 510, 578
Hpy188III TCNNGA 3 cut(s) 111, 136, 803
Hpy8I GTNNAC 1 cut(s) 244
Hpy99I CGWCG 2 cut(s) 67, 240
HpyAV CCTTC 3 cut(s) 62, 505, 505
HpyCH4III ACNGT 4 cut(s) 42, 89, 739, 775
HpyCH4V TGCA 9 cut(s) 152, 349, 429, 557, 563, 632, 718, 735, 867
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 128, 557, 560
HpyF3I CTNAG 5 cut(s) 5, 109, 450, 464, 474
Hsp92II CATG 2 cut(s) 22, 139
Kzo9I GATC 1 cut(s) 69
LmnI GCTCC 3 cut(s) 113, 170, 707
Lsp1109I GCAGC 7 cut(s) 413, 541, 547, 563, 569, 652, 696
LweI GCATC 1 cut(s) 460
MaeIII GTNAC 2 cut(s) 413, 529
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MboII GAAGA 2 cut(s) 236, 438
MhlI GDGCHC 1 cut(s) 175
MluCI AATT 4 cut(s) 274, 719, 783, 846
MlyI GAGTC 3 cut(s) 359, 383, 573
MmeI TCCRAC 3 cut(s) 61, 556, 736
MnlI CCTC 4 cut(s) 116, 253, 489, 698
MseI TTAA 5 cut(s) 32, 44, 485, 777, 795
MslI CAYNNNNRTG 1 cut(s) 587
MspA1I CMGCKG 4 cut(s) 300, 554, 560, 643
MspI CCGG 1 cut(s) 672
MspR9I CCNGG 2 cut(s) 101, 765
MvaI CCWGG 2 cut(s) 101, 765
MvnI CGCG 2 cut(s) 122, 240
MwoI GCNNNNNNNGC 4 cut(s) 80, 128, 557, 560
NdeI CATATG 2 cut(s) 586, 622
NdeII GATC 1 cut(s) 69
NlaIII CATG 2 cut(s) 22, 139
NmuCI GTSAC 1 cut(s) 413
OliI CACNNNNGTG 1 cut(s) 587
PagI TCATGA 1 cut(s) 135
PfeI GAWTC 2 cut(s) 695, 729
PkrI GCNGC 9 cut(s) 13, 76, 428, 553, 556, 559, 562, 642, 686
PleI GAGTC 3 cut(s) 359, 382, 573
PpsI GAGTC 3 cut(s) 359, 382, 573
Psp124BI GAGCTC 1 cut(s) 175
Psp6I CCWGG 2 cut(s) 99, 763
PspGI CCWGG 2 cut(s) 99, 763
PspPI GGNCC 2 cut(s) 103, 767
PstI CTGCAG 2 cut(s) 559, 565
PvuII CAGCTG 3 cut(s) 554, 560, 643
RsaI GTAC 4 cut(s) 167, 282, 517, 619
RsaNI GTAC 4 cut(s) 166, 281, 516, 618
RseI CAYNNNNRTG 1 cut(s) 587
SacI GAGCTC 1 cut(s) 175
SaqAI TTAA 5 cut(s) 32, 44, 485, 777, 795
SatI GCNGC 9 cut(s) 12, 75, 427, 552, 555, 558, 561, 641, 685
Sau3AI GATC 1 cut(s) 69
Sau96I GGNCC 2 cut(s) 103, 767
SchI GAGTC 3 cut(s) 359, 383, 573
ScrFI CCNGG 2 cut(s) 101, 765
SduI GDGCHC 1 cut(s) 175
SfaNI GCATC 1 cut(s) 460
SfcI CTRYAG 3 cut(s) 555, 561, 771
SinI GGWCC 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 587
Sse9I AATT 4 cut(s) 274, 719, 783, 846
SsiI CCGC 5 cut(s) 12, 75, 122, 264, 300
SstI GAGCTC 1 cut(s) 175
StyD4I CCNGG 2 cut(s) 99, 763
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 4 cut(s) 42, 89, 739, 775
TaqI TCGA 1 cut(s) 368
TasI AATT 4 cut(s) 274, 719, 783, 846
TatI WGTACW 1 cut(s) 617
TauI GCSGC 2 cut(s) 14, 77
TfiI GAWTC 2 cut(s) 695, 729
Tru1I TTAA 5 cut(s) 32, 44, 485, 777, 795
Tru9I TTAA 5 cut(s) 32, 44, 485, 777, 795
TscAI CASTG 5 cut(s) 399, 639, 720, 730, 742
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 7 cut(s) 426, 551, 554, 557, 560, 640, 684
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 1 cut(s) 373
TspGWI ACGGA 2 cut(s) 183, 847
TspRI CASTG 5 cut(s) 399, 639, 720, 730, 742
VpaK11BI GGWCC 1 cut(s) 103
XapI RAATTY 1 cut(s) 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.