Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0015870

Physical Location & Seq

Genomic Coordinates Forward (+)

326433 .. 326834

Gene Structure 402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0003100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTTTTTGTGCTCAAGTGACAGTGAGTCCGGGCAGTTTGTTAACAGCGGGCTGTGGGAGTCAGATTTTGTGAAGAAGGATATGTATGAGTATGGAGTTGTGCTTGTTGAGCTAATCACAGGAAAGGAGCCTATAACTACTGGCTGTTCAAACAGTCTGCACAAGAATTTGGTTGAATGGATTGATCATGTTTCAACTAGCTCATTCATTTTCAATGACGCCATTGATAGACATCTAATTGGGCAAGGGTTTGATGAGGAGATCATTCAGTTCCTTAAAATTTTATGTGACTGCGTTCAGCCATATCCATTTCAGAGGTCTACAATGCTTGAAGTATACAGAAGACTCGGCGCTCTTGGGCAGAATTATGACATTCCATGTGATTCTGGATTTCTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF92

Protein Analysis

133

Amino Acids

15.12

Weight (kDa)

4.49

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19930 AT5G19930
fragaria_vesca	FvH4_1g04221
malus_domestica	MD02G1061500.v1.1
prunus_persica	Prupe.7G235100_v2.0.a1
pyrus_communis	pycom15g16280
rosa_chinensis	RchiOBHm_Chr2g0089771
rosa_laevigata	RLG00000016054
rosa_roxburghii	Rroxscaffold_2G00151630
rosa_rugosa	Rorug02G0003100
rosa_samantha	Rh2AG048300 Rh2BG047100 Rh2CG049200 Rh2DG048600
rosa_wichuraiana	Rw2G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	320, 336
AciI	CCGC	1 cut(s)	48
AcsI	RAATTY	2 cut(s)	166, 279
AcyI	GRCGYC	1 cut(s)	219
AgsI	TTSAA	5 cut(s)	150, 176, 195, 214, 332
AhdI	GACNNNNNGTC	1 cut(s)	25
AluBI	AGCT	2 cut(s)	112, 201
AluI	AGCT	2 cut(s)	112, 201
Alw21I	GWGCWC	1 cut(s)	14
ApoI	RAATTY	2 cut(s)	166, 279
AspLEI	GCGC	1 cut(s)	353
AsuC2I	CCSGG	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	14
BclI	TGATCA	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	31
BfaI	CTAG	1 cut(s)	198
BfoI	RGCGCY	1 cut(s)	354
Bme1390I	CCNGG	1 cut(s)	31
BmeRI	GACNNNNNGTC	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	31
BpiI	GAAGAC	1 cut(s)	349
BpuMI	CCSGG	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	231
BsaHI	GRCGYC	1 cut(s)	219
Bse1I	ACTGG	1 cut(s)	145
Bse8I	GATNNNNATC	1 cut(s)	231
BseJI	GATNNNNATC	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	145
BseRI	GAGGAG	1 cut(s)	272
BsgI	GTGCAG	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	2 cut(s)	184, 261
BspACI	CCGC	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	145
BssMI	GATC	2 cut(s)	184, 261
BssNAI	GTATAC	1 cut(s)	337
BssNI	GRCGYC	1 cut(s)	219
Bst1107I	GTATAC	1 cut(s)	337
Bst4CI	ACNGT	2 cut(s)	23, 155
BstACI	GRCGYC	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	50
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	2 cut(s)	187, 264
BstMBI	GATC	2 cut(s)	184, 261
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	29
BstV2I	GAAGAC	1 cut(s)	349
BstZ17I	GTATAC	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	50
CfoI	GCGC	1 cut(s)	353
CseI	GACGC	1 cut(s)	227
CviAII	CATG	2 cut(s)	188, 378
CviJI	RGCY	6 cut(s)	52, 112, 130, 144, 201, 301
CviKI_1	RGCY	6 cut(s)	52, 112, 130, 144, 201, 301
DpnI	GATC	2 cut(s)	186, 263
DpnII	GATC	2 cut(s)	184, 261
DriI	GACNNNNNGTC	1 cut(s)	25
Eam1105I	GACNNNNNGTC	1 cut(s)	25
FaeI	CATG	2 cut(s)	191, 381
FatI	CATG	2 cut(s)	187, 377
FauI	CCCGC	1 cut(s)	41
FbaI	TGATCA	1 cut(s)	184
FblI	GTMKAC	2 cut(s)	320, 336
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	1 cut(s)	352
HaeII	RGCGCY	1 cut(s)	354
HapII	CCGG	1 cut(s)	30
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	1 cut(s)	353
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	2 cut(s)	191, 381
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	4 cut(s)	26, 59, 345, 383
HpaI	GTTAAC	1 cut(s)	43
HpaII	CCGG	1 cut(s)	30
Hpy166II	GTNNAC	3 cut(s)	43, 321, 337
Hpy188I	TCNGA	3 cut(s)	64, 315, 396
Hpy188III	TCNNGA	1 cut(s)	387
Hpy8I	GTNNAC	3 cut(s)	43, 321, 337
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	2 cut(s)	23, 155
HpyCH4V	TGCA	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	2 cut(s)	191, 381
HspAI	GCGC	1 cut(s)	351
Ksp22I	TGATCA	1 cut(s)	184
KspAI	GTTAAC	1 cut(s)	43
Kzo9I	GATC	2 cut(s)	184, 261
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	4 cut(s)	43, 105, 126, 372
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	2 cut(s)	17, 287
MalI	GATC	2 cut(s)	186, 263
MboI	GATC	2 cut(s)	184, 261
MboII	GAAGA	2 cut(s)	85, 354
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	4 cut(s)	166, 237, 279, 364
MlyI	GAGTC	3 cut(s)	35, 68, 339
MnlI	CCTC	2 cut(s)	250, 309
MseI	TTAA	2 cut(s)	42, 276
MspA1I	CMGCKG	1 cut(s)	48
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	1 cut(s)	109
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	2 cut(s)	184, 261
NlaIII	CATG	2 cut(s)	191, 381
NlaIV	GGNNCC	1 cut(s)	129
NmeAIII	GCCGAG	1 cut(s)	327
NmuCI	GTSAC	2 cut(s)	17, 287
PfeI	GAWTC	1 cut(s)	383
PleI	GAGTC	3 cut(s)	34, 67, 339
PpsI	GAGTC	3 cut(s)	34, 67, 339
PspN4I	GGNNCC	1 cut(s)	129
SaqAI	TTAA	2 cut(s)	42, 276
Sau3AI	GATC	2 cut(s)	184, 261
SchI	GAGTC	3 cut(s)	35, 68, 339
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	14
SetI	ASST	3 cut(s)	114, 203, 320
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	4 cut(s)	166, 237, 279, 364
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	29
TaaI	ACNGT	2 cut(s)	23, 155
TasI	AATT	4 cut(s)	166, 237, 279, 364
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	2 cut(s)	42, 276
Tru9I	TTAA	2 cut(s)	42, 276
TscAI	CASTG	1 cut(s)	28
TseFI	GTSAC	2 cut(s)	17, 287
Tsp45I	GTSAC	2 cut(s)	17, 287
TspDTI	ATGAA	1 cut(s)	196
TspRI	CASTG	1 cut(s)	28
XapI	RAATTY	2 cut(s)	166, 279
XmiI	GTMKAC	2 cut(s)	320, 336
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.