Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016643

Physical Location & Seq

Genomic Coordinates Forward (+)

6774102 .. 6775935

Gene Structure 1834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G20050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGAGGACAAGAAAGCAAACATAATCGCTACTATATTAATCTTAGCCCTTGTCGTAGTGATAATCGCCGCCCGAGTTTCTCTAAAACTCTCCAAAACATTCTATCTCATAGCCGGCGTCGACATTTCCTTGATCCTCGCCGTGATCTGTTTCCTCATAATCCGTAGCCGTTACAACAAAGAAAGAAAGCTCTTGGTATCAAGATTCGCCTCCGAAGGCAGAGAGCTACGAATCGAGTACAGTTTCTTGAGAAAAGTCGCCGGAGTTCCAACCAAATTCAAGCTCGAAGATCTTGAAGAAGCCACCGATGGATTCAGATCTTTGATCGGAAAAGGCGGTTCCGGTTCGGTGTTTAAAGGAGTTTTGAAAGACGGAAGTCAAGTAGCTGTGAAGAGAATCGAAGGAGAAGAGAAAGGAGAAAGAGAGTTCAGATCCGAAGTAGCTGCCATAGCTTCCGTTCAGCACAAGAATCTAGTTCGTCTTTACGGTTATTCGTCTTCGACTAGCGCGAATCGTCCGAGATTCCTCGTTTACGATTATATCGTAAACTCGTCTCTCGATATCTGGATTTTTCCGGATAGAGGAAACAGAGGAAGATCCGGAGGAGGATGCTTGTCTTGGGAACAAAGGTACCAAGTTGCTATTGATGTAGCTAAAGCTCTTGCTTATCTTCATCATGATTGTCGATCTAAGATCTTGCATCTCGATGTTAAACCCGAAAACATTCTACTAGACGAGAATTTCCGAGCGGTGGTAACCGATTTCGGACTCTCTAAGCTGATTGCTAGAGATGAGAGCAGAGTACTAACGGATATCCGTGGTACTCGGGGGTATTTAGCCCCCGAGTGGCTTCTTGAACACGGTATTTCGGAGAAATCCGATGTGTATAGCTACGGGATTGTGTTACTAGAGATGATCGGAGGACGGAGAAGCATTTCAAGGGTAGAAGTTAAGGAAACAAAAAAGAAGAAATTAGAGTATTTCCCAAGGATTGTGAACCAAAAGATGAGAGAAAGAAAGATAATGGAGATTGTTGATCAAAGGCTGATTGAAGTTAATGAGGTAGATGAAGAGGAAGTGATGAAATTGGTGTGTGTGGCTTTGTGGTGTATACAAGAGAAGTCTAAGAAAAGGCCTGATATGACTATGGTTATTGAGATGCTTGAAGGGAGAGTTCCGGTGAACGAGCCACCGGATTCAGATGTTGTTGTGGTCGATCTTTTGGCGGCTGATGATGATGATGCAAGTACCGGTGTTCGACGGGTAGTAAATATCCCGAAATTGCAAATCCATAGGGAGAGGAATTTTCGTTTATCATCCATTTGCTCTAGTATCATATCTCCCATCTCTCCACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

452

Amino Acids

51.21

Weight (kDa)

9.07

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	107 - 386	4.8e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	107 - 387	1.4e-36	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20050
fragaria_vesca	FvH4_1g03860
malus_domestica	MD02G1037000.v1.1 MD15G1177100.v1.1
prunus_persica	Prupe.7G238400_v2.0.a1 Prupe.7G238400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0089251
rosa_laevigata	RLG00000016008
rosa_multiflora	Rmu_sc0008322.1_g000020
rosa_rugosa	Rorug01G0488600
rosa_samantha	Rh2AG044600 Rh2BG043300 Rh2DG043600
rosa_wichuraiana	Rw2G003860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	630
AccB1I	GGYRCC	1 cut(s)	630
AccBSI	CCGCTC	1 cut(s)	749
AccI	GTMKAC	2 cut(s)	120, 1111
AccII	CGCG	1 cut(s)	509
AccIII	TCCGGA	2 cut(s)	574, 599
AciI	CCGC	4 cut(s)	69, 336, 749, 1226
AclWI	GGATC	3 cut(s)	127, 426, 591
AcsI	RAATTY	3 cut(s)	275, 739, 1303
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	5 cut(s)	239, 632, 804, 823, 1249
AfiI	CCNNNNNNNGG	3 cut(s)	581, 751, 846
AgeI	ACCGGT	1 cut(s)	1250
AgsI	TTSAA	7 cut(s)	280, 296, 367, 857, 939, 1052, 1166
Alw26I	GTCTC	1 cut(s)	558
AlwI	GGATC	3 cut(s)	127, 426, 591
Ama87I	CYCGRG	3 cut(s)	72, 825, 842
Aor13HI	TCCGGA	2 cut(s)	574, 599
AoxI	GGCC	1 cut(s)	1133
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	3 cut(s)	275, 739, 1303
AseI	ATTAAT	1 cut(s)	38
AsiGI	ACCGGT	1 cut(s)	1250
Asp700I	GAANNNNTTC	2 cut(s)	723, 934
Asp718I	GGTACC	1 cut(s)	630
AspLEI	GCGC	1 cut(s)	509
AsuHPI	GGTGA	1 cut(s)	1192
AvaI	CYCGRG	3 cut(s)	72, 825, 842
BaeI	ACNNNNGTAYC	2 cut(s)	614, 647
BanI	GGYRCC	1 cut(s)	630
BbsI	GAAGAC	1 cut(s)	489
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	2 cut(s)	302, 1352
BceAI	ACGGC	2 cut(s)	125, 153
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BclI	TGATCA	1 cut(s)	1036
BcoDI	GTCTC	1 cut(s)	558
BfaI	CTAG	7 cut(s)	473, 504, 731, 786, 908, 1329, 1357
BglII	AGATCT	3 cut(s)	289, 317, 693
BisI	GCNGC	3 cut(s)	69, 444, 1227
BlsI	GCNGC	3 cut(s)	70, 445, 1228
BmcAI	AGTACT	1 cut(s)	804
BmeT110I	CYCGRG	3 cut(s)	72, 825, 842
BmiI	GGNNCC	2 cut(s)	340, 632
BmsI	GCATC	4 cut(s)	599, 709, 1149, 1231
BoxI	GACNNNNGTC	1 cut(s)	375
BpiI	GAAGAC	1 cut(s)	489
BpuEI	CTTGAG	1 cut(s)	268
BsaBI	GATNNNNATC	1 cut(s)	316
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	817, 986
BsaWI	WCCGGW	6 cut(s)	341, 574, 599, 1177, 1192, 1250
Bsc4I	CCNNNNNNNGG	3 cut(s)	581, 751, 846
Bse118I	RCCGGY	2 cut(s)	113, 1250
Bse8I	GATNNNNATC	1 cut(s)	316
BseAI	TCCGGA	2 cut(s)	574, 599
BseDI	CCNNGG	2 cut(s)	817, 986
BseGI	GGATG	2 cut(s)	614, 1316
BseJI	GATNNNNATC	1 cut(s)	316
BseLI	CCNNNNNNNGG	3 cut(s)	581, 751, 846
BseRI	GAGGAG	1 cut(s)	618
BseXI	GCAGC	1 cut(s)	430
Bsh1236I	CGCG	1 cut(s)	509
BshFI	GGCC	1 cut(s)	1135
BshNI	GGYRCC	1 cut(s)	630
BshTI	ACCGGT	1 cut(s)	1250
BsiHKCI	CYCGRG	3 cut(s)	72, 825, 842
BsiSI	CCGG	8 cut(s)	114, 261, 342, 575, 600, 1178, 1193, 1251
BslI	CCNNNNNNNGG	3 cut(s)	581, 751, 846
BsmAI	GTCTC	1 cut(s)	558
BsmBI	CGTCTC	1 cut(s)	558
BsnI	GGCC	1 cut(s)	1135
BsoBI	CYCGRG	3 cut(s)	72, 825, 842
Bsp13I	TCCGGA	2 cut(s)	574, 599
BspACI	CCGC	4 cut(s)	69, 336, 749, 1226
BspANI	GGCC	1 cut(s)	1135
BspEI	TCCGGA	2 cut(s)	574, 599
BspFNI	CGCG	1 cut(s)	509
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	2 cut(s)	340, 632
BspPI	GGATC	3 cut(s)	127, 426, 591
BspT107I	GGYRCC	1 cut(s)	630
BsrBI	CCGCTC	1 cut(s)	749
BsrFI	RCCGGY	2 cut(s)	113, 1250
BssAI	RCCGGY	2 cut(s)	113, 1250
BssECI	CCNNGG	2 cut(s)	817, 986
BssNAI	GTATAC	1 cut(s)	1112
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	986
Bst1107I	GTATAC	1 cut(s)	1112
Bst4CI	ACNGT	3 cut(s)	242, 488, 863
Bst6I	CTCTTC	3 cut(s)	386, 402, 1065
BstACI	GRCGYC	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	4 cut(s)	43, 690, 774, 1125
BstDSI	CCRYGG	1 cut(s)	817
BstEII	GGTNACC	1 cut(s)	754
BstF5I	GGATG	2 cut(s)	614, 1316
BstFNI	CGCG	1 cut(s)	509
BstHHI	GCGC	1 cut(s)	509
BstMAI	GTCTC	1 cut(s)	558
BstMWI	GCNNNNNNNGC	1 cut(s)	449
BstPAI	GACNNNNGTC	1 cut(s)	375
BstPI	GGTNACC	1 cut(s)	754
BstUI	CGCG	1 cut(s)	509
BstV1I	GCAGC	1 cut(s)	430
BstV2I	GAAGAC	1 cut(s)	489
BstX2I	RGATCY	5 cut(s)	289, 317, 431, 596, 693
BstYI	RGATCY	5 cut(s)	289, 317, 431, 596, 693
BstZ17I	GTATAC	1 cut(s)	1112
BsuRI	GGCC	1 cut(s)	1135
BtgI	CCRYGG	1 cut(s)	817
BtsCI	GGATG	2 cut(s)	614, 1316
Cac8I	GCNNGC	1 cut(s)	115
CciI	TCATGA	1 cut(s)	676
CfoI	GCGC	1 cut(s)	509
Cfr10I	RCCGGY	2 cut(s)	113, 1250
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	5 cut(s)	238, 631, 803, 822, 1248
CspAI	ACCGGT	1 cut(s)	1250
CviAII	CATG	1 cut(s)	677
CviQI	GTAC	5 cut(s)	238, 631, 803, 822, 1248
DdeI	CTNAG	4 cut(s)	43, 690, 774, 1125
DraI	TTTAAA	1 cut(s)	355
Eam1104I	CTCTTC	3 cut(s)	386, 402, 1065
EarI	CTCTTC	3 cut(s)	386, 402, 1065
Eco130I	CCWWGG	1 cut(s)	986
Eco147I	AGGCCT	1 cut(s)	1135
Eco32I	GATATC	2 cut(s)	562, 814
Eco88I	CYCGRG	3 cut(s)	72, 825, 842
Eco91I	GGTNACC	1 cut(s)	754
EcoO65I	GGTNACC	1 cut(s)	754
EcoRV	GATATC	2 cut(s)	562, 814
EcoT14I	CCWWGG	1 cut(s)	986
ErhI	CCWWGG	1 cut(s)	986
Esp3I	CGTCTC	1 cut(s)	558
FaeI	CATG	1 cut(s)	680
FatI	CATG	1 cut(s)	676
FbaI	TGATCA	1 cut(s)	1036
FblI	GTMKAC	2 cut(s)	120, 1111
Fnu4HI	GCNGC	3 cut(s)	69, 444, 1227
FokI	GGATG	2 cut(s)	621, 1303
Fsp4HI	GCNGC	3 cut(s)	69, 444, 1227
FspBI	CTAG	7 cut(s)	473, 504, 731, 786, 908, 1329, 1357
GlaI	GCGC	1 cut(s)	508
GluI	GCNGC	3 cut(s)	69, 444, 1227
HaeIII	GGCC	1 cut(s)	1135
HapII	CCGG	8 cut(s)	114, 261, 342, 575, 600, 1178, 1193, 1251
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	1 cut(s)	509
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	680
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	9 cut(s)	204, 231, 312, 396, 469, 511, 522, 768, 1196
HpaII	CCGG	8 cut(s)	114, 261, 342, 575, 600, 1178, 1193, 1251
HphI	GGTGA	1 cut(s)	1192
Hpy166II	GTNNAC	6 cut(s)	121, 532, 547, 997, 1112, 1183
Hpy8I	GTNNAC	6 cut(s)	121, 532, 547, 997, 1112, 1183
Hpy99I	CGWCG	2 cut(s)	122, 1263
HpyAV	CCTTC	3 cut(s)	209, 395, 1160
HpyCH4III	ACNGT	3 cut(s)	242, 488, 863
HpyCH4V	TGCA	3 cut(s)	700, 1244, 1285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	449
HpyF3I	CTNAG	4 cut(s)	43, 690, 774, 1125
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	680
HspAI	GCGC	1 cut(s)	507
Kpn2I	TCCGGA	2 cut(s)	574, 599
KpnI	GGTACC	1 cut(s)	634
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Ksp22I	TGATCA	1 cut(s)	1036
Lsp1109I	GCAGC	1 cut(s)	430
LweI	GCATC	4 cut(s)	599, 709, 1149, 1231
MaeI	CTAG	7 cut(s)	473, 504, 731, 786, 908, 1329, 1357
MaeIII	GTNAC	3 cut(s)	170, 754, 903
MbiI	CCGCTC	1 cut(s)	749
MboII	GAAGA	9 cut(s)	299, 308, 403, 419, 489, 606, 662, 979, 1082
MflI	RGATCY	5 cut(s)	289, 317, 431, 596, 693
MluCI	AATT	6 cut(s)	275, 739, 971, 1085, 1280, 1303
MlyI	GAGTC	1 cut(s)	762
MmeI	TCCRAC	1 cut(s)	293
MroI	TCCGGA	2 cut(s)	574, 599
MroNI	GCCGGC	1 cut(s)	113
MroXI	GAANNNNTTC	2 cut(s)	723, 934
MseI	TTAA	5 cut(s)	38, 354, 711, 951, 1056
MslI	CAYNNNNRTG	1 cut(s)	705
MspI	CCGG	8 cut(s)	114, 261, 342, 575, 600, 1178, 1193, 1251
MvnI	CGCG	1 cut(s)	509
MwoI	GCNNNNNNNGC	1 cut(s)	449
NaeI	GCCGGC	1 cut(s)	115
NgoMIV	GCCGGC	1 cut(s)	113
NlaIII	CATG	1 cut(s)	680
NlaIV	GGNNCC	2 cut(s)	340, 632
PagI	TCATGA	1 cut(s)	676
PceI	AGGCCT	1 cut(s)	1135
PcsI	WCGNNNNNNNCGW	2 cut(s)	506, 540
PdiI	GCCGGC	1 cut(s)	115
PdmI	GAANNNNTTC	2 cut(s)	723, 934
PfeI	GAWTC	8 cut(s)	204, 231, 312, 396, 469, 511, 522, 1196
PinAI	ACCGGT	1 cut(s)	1250
PkrI	GCNGC	3 cut(s)	70, 445, 1228
PleI	GAGTC	1 cut(s)	762
PpsI	GAGTC	1 cut(s)	762
PshAI	GACNNNNGTC	1 cut(s)	375
PshBI	ATTAAT	1 cut(s)	38
PspEI	GGTNACC	1 cut(s)	754
PspN4I	GGNNCC	2 cut(s)	340, 632
PsuI	RGATCY	5 cut(s)	289, 317, 431, 596, 693
RsaI	GTAC	5 cut(s)	239, 632, 804, 823, 1249
RsaNI	GTAC	5 cut(s)	238, 631, 803, 822, 1248
RseI	CAYNNNNRTG	1 cut(s)	705
SalI	GTCGAC	1 cut(s)	119
SaqAI	TTAA	5 cut(s)	38, 354, 711, 951, 1056
SatI	GCNGC	3 cut(s)	69, 444, 1227
ScaI	AGTACT	1 cut(s)	804
SchI	GAGTC	1 cut(s)	762
SfaNI	GCATC	4 cut(s)	599, 709, 1149, 1231
SmiMI	CAYNNNNRTG	1 cut(s)	705
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	6 cut(s)	275, 739, 971, 1085, 1280, 1303
SseBI	AGGCCT	1 cut(s)	1135
SsiI	CCGC	4 cut(s)	69, 336, 749, 1226
SspMI	CTAG	7 cut(s)	473, 504, 731, 786, 908, 1329, 1357
StuI	AGGCCT	1 cut(s)	1135
StyI	CCWWGG	1 cut(s)	986
TaaI	ACNGT	3 cut(s)	242, 488, 863
TasI	AATT	6 cut(s)	275, 739, 971, 1085, 1280, 1303
TatI	WGTACW	2 cut(s)	237, 802
TauI	GCSGC	2 cut(s)	71, 1229
TfiI	GAWTC	8 cut(s)	204, 231, 312, 396, 469, 511, 522, 1196
Tru1I	TTAA	5 cut(s)	38, 354, 711, 951, 1056
Tru9I	TTAA	5 cut(s)	38, 354, 711, 951, 1056
TseI	GCWGC	1 cut(s)	443
TspDTI	ATGAA	3 cut(s)	662, 1083, 1097
TspGWI	ACGGA	6 cut(s)	152, 387, 445, 806, 824, 940
VspI	ATTAAT	1 cut(s)	38
XapI	RAATTY	3 cut(s)	275, 739, 1303
XmiI	GTMKAC	2 cut(s)	120, 1111
XmnI	GAANNNNTTC	2 cut(s)	723, 934
XspI	CTAG	7 cut(s)	473, 504, 731, 786, 908, 1329, 1357
ZrmI	AGTACT	1 cut(s)	804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.